RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 NOTCH2NLQ7Z3S9 236 aa9.82□□□□□ -0.84
PHRF1-202ENST00000413872 APCP25054 2843 aa9.81□□□□□ -0.84
PHRF1-202ENST00000413872 ADM2Q7Z4H4 148 aa9.78□□□□□ -0.84
PHRF1-202ENST00000413872 COL6A3P12111 3177 aa9.77□□□□□ -0.85
PHRF1-202ENST00000413872 PLAC4Q8WY50 150 aa9.76□□□□□ -0.85
PHRF1-202ENST00000413872 ZZEF1O43149 2961 aa9.75□□□□□ -0.85
PHRF1-202ENST00000413872 CFAP47Q6ZTR5 3102 aa9.73□□□□□ -0.85
PHRF1-202ENST00000413872 CELSR2Q9HCU4 2923 aa9.73□□□□□ -0.85
PHRF1-202ENST00000413872 ROMO1P60602 79 aa9.71□□□□□ -0.85
PHRF1-202ENST00000413872 CRYBG3Q68DQ2 2970 aa9.63□□□□□ -0.87
PHRF1-202ENST00000413872 ZANQ9Y493 2812 aa9.61□□□□□ -0.87
PHRF1-202ENST00000413872 EYSQ5T1H1 3165 aa9.6□□□□□ -0.87
PHRF1-202ENST00000413872 SPATA8Q6RVD6 105 aa9.59□□□□□ -0.88
PHRF1-202ENST00000413872 DCHS2Q6V1P9 2916 aa9.58□□□□□ -0.88
PHRF1-202ENST00000413872 TNRC18O15417 2968 aaPredicted RBP9.57□□□□□ -0.88
PHRF1-202ENST00000413872 A8MUU9 505 aa9.57□□□□□ -0.88
PHRF1-202ENST00000413872 C20orf166-AS1Q96NR2 134 aa9.54□□□□□ -0.88
PHRF1-202ENST00000413872 SPEGQ15772 3267 aa9.53□□□□□ -0.88
PHRF1-202ENST00000413872 KRTAP1-4P0C5Y4 121 aa9.46□□□□□ -0.89
PHRF1-202ENST00000413872 DMXL1Q9Y485 3027 aa9.43□□□□□ -0.9
PHRF1-202ENST00000413872 FBN2P35556 2912 aa9.36□□□□□ -0.91
PHRF1-202ENST00000413872 NF1P21359 2839 aa9.35□□□□□ -0.91
PHRF1-202ENST00000413872 A0A0A0MQY5 61 aa9.35□□□□□ -0.91
PHRF1-202ENST00000413872 XP32Q5T750 250 aa9.34□□□□□ -0.91
PHRF1-202ENST00000413872 USP34Q70CQ2 3546 aa9.33□□□□□ -0.92
PHRF1-202ENST00000413872 LOC400499M0QZD8 3231 aa9.33□□□□□ -0.92
PHRF1-202ENST00000413872 SPTBN5Q9NRC6 3674 aaKnown RBP9.33□□□□□ -0.92
PHRF1-202ENST00000413872 HRNRQ86YZ3 2850 aaPredicted RBP9.32□□□□□ -0.92
PHRF1-202ENST00000413872 TPRXLQ17RH7 258 aa9.31□□□□□ -0.92
PHRF1-202ENST00000413872 A8MU10 97 aa9.31□□□□□ -0.92
PHRF1-202ENST00000413872 H3BS24 57 aa9.31□□□□□ -0.92
PHRF1-202ENST00000413872 TENM3Q9P273 2699 aa9.26□□□□□ -0.93
PHRF1-202ENST00000413872 TENM1Q9UKZ4 2725 aa9.21□□□□□ -0.94
PHRF1-202ENST00000413872 MYO15AQ9UKN7 3530 aa9.21□□□□□ -0.94
PHRF1-202ENST00000413872 A6NN06 94 aa9.2□□□□□ -0.94
PHRF1-202ENST00000413872 TNP1P09430 55 aa9.18□□□□□ -0.94
PHRF1-202ENST00000413872 MXRA5Q9NR99 2828 aa9.14□□□□□ -0.95
PHRF1-202ENST00000413872 KRTAP25-1Q3LHN0 102 aa9.14□□□□□ -0.95
PHRF1-202ENST00000413872 TENM2Q9NT68 2774 aa9.12□□□□□ -0.95
PHRF1-202ENST00000413872 A0A1B0GVY2 172 aa9.11□□□□□ -0.95
PHRF1-202ENST00000413872 KRTAP13-3Q3SY46 172 aa9.09□□□□□ -0.95
PHRF1-202ENST00000413872 KRTAP16-1A8MUX0 517 aa9.08□□□□□ -0.96
PHRF1-202ENST00000413872 KRTAP10-8P60410 259 aa9.03□□□□□ -0.96
PHRF1-202ENST00000413872 CELSR1Q9NYQ6 3014 aa9.03□□□□□ -0.96
PHRF1-202ENST00000413872 DCHS1Q96JQ0 3298 aa8.98□□□□□ -0.97
PHRF1-202ENST00000413872 PKD1L1Q8TDX9 2849 aa8.97□□□□□ -0.97
PHRF1-202ENST00000413872 PP632Q6XCG6 107 aa8.95□□□□□ -0.98
PHRF1-202ENST00000413872 RELNP78509 3460 aa8.93□□□□□ -0.98
PHRF1-202ENST00000413872 KRTAP10-10P60014 251 aa8.9□□□□□ -0.99
PHRF1-202ENST00000413872 PDZD2O15018 2839 aa8.87□□□□□ -0.99
PHRF1-202ENST00000413872 WDFY3Q8IZQ1 3526 aa8.84□□□□□ -0.99
PHRF1-202ENST00000413872 PRO2289Q9P1D8 64 aa8.83□□□□□ -1
PHRF1-202ENST00000413872 TGP01266 2768 aa8.81□□□□□ -1
PHRF1-202ENST00000413872 VWFP04275 2813 aa8.81□□□□□ -1
PHRF1-202ENST00000413872 NDUFAF8A1L188 74 aa8.79□□□□□ -1
PHRF1-202ENST00000413872 H0YAA0 97 aa8.76□□□□□ -1.01
PHRF1-202ENST00000413872 C10orf95Q9H7T3 257 aa8.7□□□□□ -1.02
PHRF1-202ENST00000413872 P0C880 135 aa8.68□□□□□ -1.02
PHRF1-202ENST00000413872 FBN1P35555 2871 aaKnown RBP8.66□□□□□ -1.02
PHRF1-202ENST00000413872 OTOGQ6ZRI0 2925 aa8.63□□□□□ -1.03
PHRF1-202ENST00000413872 LAMA5O15230 3695 aa8.63□□□□□ -1.03
PHRF1-202ENST00000413872 ASPMQ8IZT6 3477 aa8.62□□□□□ -1.03
PHRF1-202ENST00000413872 ZFHX4Q86UP3 3567 aa8.6□□□□□ -1.03
PHRF1-202ENST00000413872 SRRM2Q9UQ35 2752 aaKnown RBP8.54□□□□□ -1.04
PHRF1-202ENST00000413872 CSMD1Q96PZ7 3565 aa8.44□□□□□ -1.06
PHRF1-202ENST00000413872 NBPF19A0A087WUL8 3843 aa8.41□□□□□ -1.06
PHRF1-202ENST00000413872 ZFHX3Q15911 3703 aa8.38□□□□□ -1.07
PHRF1-202ENST00000413872 MUC3AQ02505 3323 aa8.36□□□□□ -1.07
PHRF1-202ENST00000413872 FBN3Q75N90 2809 aa8.31□□□□□ -1.08
PHRF1-202ENST00000413872 DMDP11532 3685 aa8.31□□□□□ -1.08
PHRF1-202ENST00000413872 SMG1Q96Q15 3661 aaKnown RBP8.3□□□□□ -1.08
PHRF1-202ENST00000413872 KRTAP3-1Q9BYR8 98 aa8.28□□□□□ -1.08
PHRF1-202ENST00000413872 MT1HL1P0DM35 61 aa8.27□□□□□ -1.09
PHRF1-202ENST00000413872 KRTAP12-2P59991 146 aa8.26□□□□□ -1.09
PHRF1-202ENST00000413872 KRTAP13-4Q3LI77 160 aa8.26□□□□□ -1.09
PHRF1-202ENST00000413872 ANK3Q12955 4377 aaKnown RBP8.24□□□□□ -1.09
PHRF1-202ENST00000413872 CUBNO60494 3623 aa8.23□□□□□ -1.09
PHRF1-202ENST00000413872 KRTAP12-1P59990 96 aa8.21□□□□□ -1.1
PHRF1-202ENST00000413872 SVEP1Q4LDE5 3571 aa8.18□□□□□ -1.1
PHRF1-202ENST00000413872 CSMD2Q7Z408 3487 aa8.16□□□□□ -1.1
PHRF1-202ENST00000413872 MEGF8Q7Z7M0 2845 aa8.15□□□□□ -1.1
PHRF1-202ENST00000413872 COL7A1Q02388 2944 aa8.14□□□□□ -1.11
PHRF1-202ENST00000413872 KRTAP10-4P60372 401 aaPredicted RBP8.07□□□□□ -1.12
PHRF1-202ENST00000413872 KRTAP10-6P60371 365 aaPredicted RBP8.03□□□□□ -1.12
PHRF1-202ENST00000413872 TRRAPQ9Y4A5 3859 aa7.99□□□□□ -1.13
PHRF1-202ENST00000413872 KRTAP4-5Q9BYR2 181 aa7.93□□□□□ -1.14
PHRF1-202ENST00000413872 SPENQ96T58 3664 aaKnown RBP7.9□□□□□ -1.14
PHRF1-202ENST00000413872 KRTAP15-1Q3LI76 137 aa7.84□□□□□ -1.16
PHRF1-202ENST00000413872 KRTAP3-3Q9BYR6 98 aa7.79□□□□□ -1.16
PHRF1-202ENST00000413872 KRTAP3-2Q9BYR7 98 aa7.76□□□□□ -1.17
PHRF1-202ENST00000413872 HUWE1Q7Z6Z7 4374 aaKnown RBP7.75□□□□□ -1.17
PHRF1-202ENST00000413872 ALMS1Q8TCU4 4167 aa7.72□□□□□ -1.17
PHRF1-202ENST00000413872 KRTAP10-12P60413 245 aa7.66□□□□□ -1.18
PHRF1-202ENST00000413872 BSNQ9UPA5 3926 aa7.6□□□□□ -1.19
PHRF1-202ENST00000413872 VPS13CQ709C8 3753 aa7.49□□□□□ -1.21
PHRF1-202ENST00000413872 KRTAP23-1A1A580 65 aa7.48□□□□□ -1.21
PHRF1-202ENST00000413872 DNAH9Q9NYC9 4486 aa7.42□□□□□ -1.22
PHRF1-202ENST00000413872 KRTAP12-3P60328 96 aa7.4□□□□□ -1.22
PHRF1-202ENST00000413872 CSMD3Q7Z407 3707 aa7.37□□□□□ -1.23
PHRF1-202ENST00000413872 DNAH5Q8TE73 4624 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms