RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 MAST4O15021 2626 aa3.4□□□□□ -1.87
CCDC88A-203ENST00000412148 BAHCC1Q9P281 2608 aa3.39□□□□□ -1.87
CCDC88A-203ENST00000412148 A0A087WTM6 91 aa3.39□□□□□ -1.87
CCDC88A-203ENST00000412148 SSBP3-AS1Q7Z2R9 100 aa3.39□□□□□ -1.87
CCDC88A-203ENST00000412148 A6NED7 52 aa3.38□□□□□ -1.87
CCDC88A-203ENST00000412148 PSORS1C2Q9UIG4 136 aa3.38□□□□□ -1.87
CCDC88A-203ENST00000412148 IGHV6-1A0A0B4J1U7 121 aa3.38□□□□□ -1.87
CCDC88A-203ENST00000412148 DMAC1Q96GE9 116 aa3.38□□□□□ -1.87
CCDC88A-203ENST00000412148 ACYP2P14621 99 aa3.37□□□□□ -1.87
CCDC88A-203ENST00000412148 PCOTHQ58A44 107 aa3.37□□□□□ -1.87
CCDC88A-203ENST00000412148 A8MU10 97 aa3.37□□□□□ -1.87
CCDC88A-203ENST00000412148 PRB2P02812 416 aaPredicted RBP3.36□□□□□ -1.87
CCDC88A-203ENST00000412148 DNAH10Q8IVF4 4471 aa3.36□□□□□ -1.87
CCDC88A-203ENST00000412148 RTL8CO15255 209 aa3.36□□□□□ -1.87
CCDC88A-203ENST00000412148 XP32Q5T750 250 aa3.36□□□□□ -1.87
CCDC88A-203ENST00000412148 ALMS1Q8TCU4 4167 aa3.35□□□□□ -1.87
CCDC88A-203ENST00000412148 LYSTQ99698 3801 aa3.35□□□□□ -1.87
CCDC88A-203ENST00000412148 FLNBO75369 2602 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-203ENST00000412148 FBN1P35555 2871 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-203ENST00000412148 IGLV7-43P04211 117 aa3.35□□□□□ -1.87
CCDC88A-203ENST00000412148 SPAG11AQ6PDA7 123 aa3.35□□□□□ -1.87
CCDC88A-203ENST00000412148 Q5W150 140 aa3.35□□□□□ -1.87
CCDC88A-203ENST00000412148 C7orf65Q6ZTY9 151 aa3.35□□□□□ -1.87
CCDC88A-203ENST00000412148 NOTCH2NLQ7Z3S9 236 aa3.35□□□□□ -1.87
CCDC88A-203ENST00000412148 HECTD1Q9ULT8 2610 aa3.33□□□□□ -1.88
CCDC88A-203ENST00000412148 KRTAP23-1A1A580 65 aa3.33□□□□□ -1.88
CCDC88A-203ENST00000412148 IGKV2-30P06310 120 aa3.33□□□□□ -1.88
CCDC88A-203ENST00000412148 SPINK7P58062 85 aa3.33□□□□□ -1.88
CCDC88A-203ENST00000412148 VPS13DQ5THJ4 4388 aa3.32□□□□□ -1.88
CCDC88A-203ENST00000412148 KRTAP16-1A8MUX0 517 aa3.31□□□□□ -1.88
CCDC88A-203ENST00000412148 SPATA8Q6RVD6 105 aa3.31□□□□□ -1.88
CCDC88A-203ENST00000412148 SPTSSBQ8NFR3 76 aa3.31□□□□□ -1.88
CCDC88A-203ENST00000412148 COL7A1Q02388 2944 aa3.31□□□□□ -1.88
CCDC88A-203ENST00000412148 RBM12B-AS1Q9P1G2 102 aa3.31□□□□□ -1.88
CCDC88A-203ENST00000412148 DNAH17Q9UFH2 4485 aa3.31□□□□□ -1.88
CCDC88A-203ENST00000412148 LINC00313P59037 77 aa3.3□□□□□ -1.88
CCDC88A-203ENST00000412148 F8P00451 2351 aa3.3□□□□□ -1.88
CCDC88A-203ENST00000412148 SRRM2Q9UQ35 2752 aaKnown RBP3.29□□□□□ -1.88
CCDC88A-203ENST00000412148 STAB1Q9NY15 2570 aa3.29□□□□□ -1.88
CCDC88A-203ENST00000412148 DNAH8Q96JB1 4490 aa3.29□□□□□ -1.88
CCDC88A-203ENST00000412148 Q6ZSA8 131 aa3.28□□□□□ -1.88
CCDC88A-203ENST00000412148 PRKDCP78527 4128 aaKnown RBP3.28□□□□□ -1.88
CCDC88A-203ENST00000412148 C1orf134Q5TEV5 83 aa3.28□□□□□ -1.88
CCDC88A-203ENST00000412148 DNAH7Q8WXX0 4024 aa3.28□□□□□ -1.88
CCDC88A-203ENST00000412148 CSMD3Q7Z407 3707 aa3.27□□□□□ -1.89
CCDC88A-203ENST00000412148 RPS29P62273 56 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-203ENST00000412148 CIRBP-AS1Q8TBR5 109 aa3.27□□□□□ -1.89
CCDC88A-203ENST00000412148 ANAPC11Q9NYG5 84 aa3.27□□□□□ -1.89
CCDC88A-203ENST00000412148 DNAH6Q9C0G6 4158 aa3.27□□□□□ -1.89
CCDC88A-203ENST00000412148 NBEAL1Q6ZS30 2694 aa3.27□□□□□ -1.89
CCDC88A-203ENST00000412148 A0A1B0GU69 56 aa3.27□□□□□ -1.89
CCDC88A-203ENST00000412148 KRTAP4-8Q9BYQ9 185 aa3.26□□□□□ -1.89
CCDC88A-203ENST00000412148 HECTD4Q9Y4D8 3996 aa3.26□□□□□ -1.89
CCDC88A-203ENST00000412148 IGKV2D-30A0A075B6S6 120 aa3.26□□□□□ -1.89
CCDC88A-203ENST00000412148 SPINK6Q6UWN8 80 aa3.26□□□□□ -1.89
CCDC88A-203ENST00000412148 KRTAP13-2Q52LG2 175 aa3.26□□□□□ -1.89
CCDC88A-203ENST00000412148 PLECQ15149 4684 aaKnown RBP3.25□□□□□ -1.89
CCDC88A-203ENST00000412148 UQCR11O14957 56 aa3.25□□□□□ -1.89
CCDC88A-203ENST00000412148 FBN3Q75N90 2809 aa3.25□□□□□ -1.89
CCDC88A-203ENST00000412148 KRTAP1-4P0C5Y4 121 aa3.24□□□□□ -1.89
CCDC88A-203ENST00000412148 NOTCH1P46531 2555 aa3.24□□□□□ -1.89
CCDC88A-203ENST00000412148 STAB2Q8WWQ8 2551 aa3.23□□□□□ -1.89
CCDC88A-203ENST00000412148 SPINK1P00995 79 aa3.23□□□□□ -1.89
CCDC88A-203ENST00000412148 DNAH2Q9P225 4427 aa3.23□□□□□ -1.89
CCDC88A-203ENST00000412148 MIR22HGQ0VDD5 57 aa3.22□□□□□ -1.89
CCDC88A-203ENST00000412148 COL6A5A8TX70 2615 aa3.19□□□□□ -1.9
CCDC88A-203ENST00000412148 STARD9Q9P2P6 4700 aa3.19□□□□□ -1.9
CCDC88A-203ENST00000412148 KRTAP9-2Q9BYQ4 174 aa3.18□□□□□ -1.9
CCDC88A-203ENST00000412148 LY6G6CO95867 125 aa3.18□□□□□ -1.9
CCDC88A-203ENST00000412148 KRTAP10-2P60368 255 aa3.18□□□□□ -1.9
CCDC88A-203ENST00000412148 FRAS1Q86XX4 4008 aa3.18□□□□□ -1.9
CCDC88A-203ENST00000412148 KRTAP9-6A0A140TA67 174 aa3.17□□□□□ -1.9
CCDC88A-203ENST00000412148 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.17□□□□□ -1.9
CCDC88A-203ENST00000412148 RETNLBQ9BQ08 111 aa3.17□□□□□ -1.9
CCDC88A-203ENST00000412148 KRTAP10-1P60331 282 aa3.16□□□□□ -1.9
CCDC88A-203ENST00000412148 C20orf166-AS1Q96NR2 134 aa3.16□□□□□ -1.9
CCDC88A-203ENST00000412148 A8MUU9 505 aa3.16□□□□□ -1.9
CCDC88A-203ENST00000412148 LINC01554Q52M75 96 aa3.16□□□□□ -1.9
CCDC88A-203ENST00000412148 TYMSOSQ8TAI1 123 aa3.15□□□□□ -1.91
CCDC88A-203ENST00000412148 DNAH11Q96DT5 4516 aa3.14□□□□□ -1.91
CCDC88A-203ENST00000412148 PKD1P98161 4303 aa3.14□□□□□ -1.91
CCDC88A-203ENST00000412148 MEGF8Q7Z7M0 2845 aa3.14□□□□□ -1.91
CCDC88A-203ENST00000412148 LINC00304Q8N9R0 145 aa3.13□□□□□ -1.91
CCDC88A-203ENST00000412148 DNAH5Q8TE73 4624 aa3.12□□□□□ -1.91
CCDC88A-203ENST00000412148 MGAM2Q2M2H8 2515 aa3.12□□□□□ -1.91
CCDC88A-203ENST00000412148 KMT2AQ03164 3969 aa3.12□□□□□ -1.91
CCDC88A-203ENST00000412148 LCE3BQ5TA77 95 aa3.12□□□□□ -1.91
CCDC88A-203ENST00000412148 SACSQ9NZJ4 4579 aa3.11□□□□□ -1.91
CCDC88A-203ENST00000412148 ADM2Q7Z4H4 148 aa3.11□□□□□ -1.91
CCDC88A-203ENST00000412148 KRTAP3-1Q9BYR8 98 aa3.11□□□□□ -1.91
CCDC88A-203ENST00000412148 H0YAA0 97 aa3.1□□□□□ -1.91
CCDC88A-203ENST00000412148 KRTAP4-12Q9BQ66 201 aa3.09□□□□□ -1.92
CCDC88A-203ENST00000412148 H1FX-AS1Q4G0G2 97 aa3.08□□□□□ -1.92
CCDC88A-203ENST00000412148 A0A1B0GU33 70 aa3.07□□□□□ -1.92
CCDC88A-203ENST00000412148 Q8N1X5 172 aa3.07□□□□□ -1.92
CCDC88A-203ENST00000412148 CSAG1Q6PB30 78 aa3.07□□□□□ -1.92
CCDC88A-203ENST00000412148 FAT2Q9NYQ8 4349 aa3.06□□□□□ -1.92
CCDC88A-203ENST00000412148 LRP1BQ9NZR2 4599 aa3.06□□□□□ -1.92
CCDC88A-203ENST00000412148 KRTAP10-4P60372 401 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-203ENST00000412148 COX6B2Q6YFQ2 88 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms