RNA–Protein interactions for RNA: ENST00000396096.6

NUP50-202, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 1,895 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-202ENST00000396096 HYDINQ4G0P3 5121 aa9.82□□□□□ -0.84
NUP50-202ENST00000396096 SPANXA2-OT1Q8N9U9 137 aa9.81□□□□□ -0.84
NUP50-202ENST00000396096 MRPL34Q9BQ48 92 aaKnown RBP9.81□□□□□ -0.84
NUP50-202ENST00000396096 A0A087X002 238 aa9.79□□□□□ -0.84
NUP50-202ENST00000396096 KRTAP13-2Q52LG2 175 aa9.79□□□□□ -0.84
NUP50-202ENST00000396096 NOTCH2NLQ7Z3S9 236 aa9.77□□□□□ -0.85
NUP50-202ENST00000396096 SPINK6Q6UWN8 80 aa9.76□□□□□ -0.85
NUP50-202ENST00000396096 LRP1BQ9NZR2 4599 aa9.75□□□□□ -0.85
NUP50-202ENST00000396096 KRTAP1-4P0C5Y4 121 aa9.75□□□□□ -0.85
NUP50-202ENST00000396096 C8orf87E5RJ46 101 aa9.73□□□□□ -0.85
NUP50-202ENST00000396096 NDUFS5O43920 106 aa9.72□□□□□ -0.85
NUP50-202ENST00000396096 PRR4Q16378 134 aa9.72□□□□□ -0.85
NUP50-202ENST00000396096 IGLV7-46A0A075B6I9 117 aa9.68□□□□□ -0.86
NUP50-202ENST00000396096 C1orf195Q5TG92 126 aa9.68□□□□□ -0.86
NUP50-202ENST00000396096 LINC00336Q6ZUF6 198 aa9.68□□□□□ -0.86
NUP50-202ENST00000396096 KRTAP13-3Q3SY46 172 aa9.65□□□□□ -0.86
NUP50-202ENST00000396096 LIMD2Q9BT23 127 aa9.65□□□□□ -0.86
NUP50-202ENST00000396096 MPLKIPQ8TAP9 179 aa9.64□□□□□ -0.87
NUP50-202ENST00000396096 VPS13BQ7Z7G8 4022 aa9.63□□□□□ -0.87
NUP50-202ENST00000396096 SACSQ9NZJ4 4579 aa9.63□□□□□ -0.87
NUP50-202ENST00000396096 Q1T7F1 81 aa9.63□□□□□ -0.87
NUP50-202ENST00000396096 LINC00313P59037 77 aa9.62□□□□□ -0.87
NUP50-202ENST00000396096 LOC101927531A0A1B0GV80 90 aa9.62□□□□□ -0.87
NUP50-202ENST00000396096 PLA2G1BP04054 148 aaKnown RBP9.62□□□□□ -0.87
NUP50-202ENST00000396096 PCOTHQ58A44 107 aa9.61□□□□□ -0.87
NUP50-202ENST00000396096 Q5W150 140 aa9.6□□□□□ -0.87
NUP50-202ENST00000396096 Q8N9P0 234 aaPredicted RBP9.59□□□□□ -0.87
NUP50-202ENST00000396096 A0A1B0GVY2 172 aa9.58□□□□□ -0.88
NUP50-202ENST00000396096 TYMSOSQ8TAI1 123 aa9.58□□□□□ -0.88
NUP50-202ENST00000396096 SPINK1P00995 79 aa9.56□□□□□ -0.88
NUP50-202ENST00000396096 C4orf48Q5BLP8 95 aa9.56□□□□□ -0.88
NUP50-202ENST00000396096 KRTAP16-1A8MUX0 517 aa9.55□□□□□ -0.88
NUP50-202ENST00000396096 FAM229AH3BQW9 127 aa9.53□□□□□ -0.88
NUP50-202ENST00000396096 COA5Q86WW8 74 aa9.53□□□□□ -0.88
NUP50-202ENST00000396096 V9GYY9 64 aa9.53□□□□□ -0.88
NUP50-202ENST00000396096 RPS29P62273 56 aaKnown RBP9.52□□□□□ -0.89
NUP50-202ENST00000396096 PKHD1P08F94 4074 aa9.51□□□□□ -0.89
NUP50-202ENST00000396096 DYNC1H1Q14204 4646 aaKnown RBP9.51□□□□□ -0.89
NUP50-202ENST00000396096 SPAG11AQ6PDA7 123 aa9.47□□□□□ -0.89
NUP50-202ENST00000396096 PRR26Q8N8Z3 221 aa9.47□□□□□ -0.89
NUP50-202ENST00000396096 LINC00304Q8N9R0 145 aa9.47□□□□□ -0.89
NUP50-202ENST00000396096 KRTAP10-4P60372 401 aaPredicted RBP9.46□□□□□ -0.9
NUP50-202ENST00000396096 PRO0628Q9UI54 55 aa9.45□□□□□ -0.9
NUP50-202ENST00000396096 SMR3BP02814 79 aaPredicted RBP9.45□□□□□ -0.9
NUP50-202ENST00000396096 IGKV2-30P06310 120 aa9.42□□□□□ -0.9
NUP50-202ENST00000396096 HRES1P13985 223 aa9.42□□□□□ -0.9
NUP50-202ENST00000396096 PSPHP1O15172 72 aa9.4□□□□□ -0.91
NUP50-202ENST00000396096 APOBP04114 4563 aaKnown RBP9.4□□□□□ -0.91
NUP50-202ENST00000396096 RYR2Q92736 4967 aa9.39□□□□□ -0.91
NUP50-202ENST00000396096 KMT2CQ8NEZ4 4911 aaKnown RBP9.38□□□□□ -0.91
NUP50-202ENST00000396096 BRK1Q8WUW1 75 aa9.38□□□□□ -0.91
NUP50-202ENST00000396096 A8MUN3 132 aa9.37□□□□□ -0.91
NUP50-202ENST00000396096 RETNLBQ9BQ08 111 aa9.37□□□□□ -0.91
NUP50-202ENST00000396096 Q5VV11 94 aa9.35□□□□□ -0.91
NUP50-202ENST00000396096 DMAC1Q96GE9 116 aa9.34□□□□□ -0.91
NUP50-202ENST00000396096 ACYP2P14621 99 aa9.33□□□□□ -0.92
NUP50-202ENST00000396096 PKHD1L1Q86WI1 4243 aa9.33□□□□□ -0.92
NUP50-202ENST00000396096 LINC01558Q9Y6Z2 57 aa9.31□□□□□ -0.92
NUP50-202ENST00000396096 PRR15LQ9BU68 103 aa9.3□□□□□ -0.92
NUP50-202ENST00000396096 FAT1Q14517 4588 aa9.27□□□□□ -0.93
NUP50-202ENST00000396096 Q75L30 129 aa9.27□□□□□ -0.93
NUP50-202ENST00000396096 IGKV2D-30A0A075B6S6 120 aa9.25□□□□□ -0.93
NUP50-202ENST00000396096 CHKB-CPT1BH3BT56 60 aa9.21□□□□□ -0.93
NUP50-202ENST00000396096 RYR3Q15413 4870 aa9.21□□□□□ -0.93
NUP50-202ENST00000396096 C20orf166-AS1Q96NR2 134 aa9.21□□□□□ -0.94
NUP50-202ENST00000396096 A8MUU9 505 aa9.2□□□□□ -0.94
NUP50-202ENST00000396096 C7orf65Q6ZTY9 151 aa9.19□□□□□ -0.94
NUP50-202ENST00000396096 C9orf92A6NGG3 77 aa9.14□□□□□ -0.95
NUP50-202ENST00000396096 A6NED7 52 aa9.1□□□□□ -0.95
NUP50-202ENST00000396096 KRTAP10-8P60410 259 aa9.1□□□□□ -0.95
NUP50-202ENST00000396096 FLG2Q5D862 2391 aaPredicted RBP9.09□□□□□ -0.95
NUP50-202ENST00000396096 Q5VSD8 79 aa9.08□□□□□ -0.96
NUP50-202ENST00000396096 Q8N1X5 172 aa9.07□□□□□ -0.96
NUP50-202ENST00000396096 LCA10Q71F78 164 aa9.06□□□□□ -0.96
NUP50-202ENST00000396096 A8MU10 97 aa9.06□□□□□ -0.96
NUP50-202ENST00000396096 CDC42SE1Q9NRR8 79 aa9.04□□□□□ -0.96
NUP50-202ENST00000396096 SPINK7P58062 85 aa9.02□□□□□ -0.97
NUP50-202ENST00000396096 HSPG2P98160 4391 aa9.02□□□□□ -0.97
NUP50-202ENST00000396096 TNXBP22105 4242 aa9.01□□□□□ -0.97
NUP50-202ENST00000396096 A0A1B0GU69 56 aa8.98□□□□□ -0.97
NUP50-202ENST00000396096 FAT3Q8TDW7 4589 aa8.97□□□□□ -0.97
NUP50-202ENST00000396096 RYR1P21817 5038 aa8.97□□□□□ -0.97
NUP50-202ENST00000396096 ATP11AUNQ6ZP68 121 aa8.97□□□□□ -0.97
NUP50-202ENST00000396096 LRP1Q07954 4544 aaKnown RBP8.93□□□□□ -0.98
NUP50-202ENST00000396096 KRTAP17-1Q9BYP8 105 aa8.92□□□□□ -0.98
NUP50-202ENST00000396096 KRTAP3-1Q9BYR8 98 aa8.91□□□□□ -0.98
NUP50-202ENST00000396096 EPPK1P58107 5090 aaKnown RBP8.88□□□□□ -0.99
NUP50-202ENST00000396096 SPTSSBQ8NFR3 76 aa8.88□□□□□ -0.99
NUP50-202ENST00000396096 PMAIP1Q13794 54 aa8.87□□□□□ -0.99
NUP50-202ENST00000396096 MT1HL1P0DM35 61 aa8.84□□□□□ -0.99
NUP50-202ENST00000396096 RPL37P61927 97 aaKnown RBP8.84□□□□□ -0.99
NUP50-202ENST00000396096 COX6B2Q6YFQ2 88 aa8.83□□□□□ -1
NUP50-202ENST00000396096 SPATA8Q6RVD6 105 aa8.81□□□□□ -1
NUP50-202ENST00000396096 A6NN06 94 aa8.8□□□□□ -1
NUP50-202ENST00000396096 UQCR11O14957 56 aa8.8□□□□□ -1
NUP50-202ENST00000396096 XP32Q5T750 250 aa8.8□□□□□ -1
NUP50-202ENST00000396096 DMBT1Q9UGM3 2413 aaPredicted RBP8.77□□□□□ -1.01
NUP50-202ENST00000396096 SEC61GP60059 68 aa8.76□□□□□ -1.01
NUP50-202ENST00000396096 KIAA1109Q2LD37 5005 aa8.75□□□□□ -1.01
NUP50-202ENST00000396096 MIR22HGQ0VDD5 57 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms