RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 ATP11AUNQ6ZP68 121 aa9.66□□□□□ -0.86
PCDH1-203ENST00000394536 C7orf65Q6ZTY9 151 aa9.64□□□□□ -0.87
PCDH1-203ENST00000394536 FAM229AH3BQW9 127 aa9.64□□□□□ -0.87
PCDH1-203ENST00000394536 SSBP3-AS1Q7Z2R9 100 aa9.63□□□□□ -0.87
PCDH1-203ENST00000394536 RBM12B-AS1Q9P1G2 102 aa9.63□□□□□ -0.87
PCDH1-203ENST00000394536 C8orf87E5RJ46 101 aa9.6□□□□□ -0.87
PCDH1-203ENST00000394536 Q75L30 129 aa9.6□□□□□ -0.87
PCDH1-203ENST00000394536 Q96NJ1 140 aa9.59□□□□□ -0.87
PCDH1-203ENST00000394536 PLA2G1BP04054 148 aaKnown RBP9.59□□□□□ -0.87
PCDH1-203ENST00000394536 SPINK7P58062 85 aa9.59□□□□□ -0.87
PCDH1-203ENST00000394536 Q6ZRN7 208 aaPredicted RBP9.59□□□□□ -0.87
PCDH1-203ENST00000394536 CDC42SE1Q9NRR8 79 aa9.59□□□□□ -0.87
PCDH1-203ENST00000394536 PLAC8Q9NZF1 115 aa9.58□□□□□ -0.88
PCDH1-203ENST00000394536 Q5W150 140 aa9.57□□□□□ -0.88
PCDH1-203ENST00000394536 TYMSOSQ8TAI1 123 aa9.57□□□□□ -0.88
PCDH1-203ENST00000394536 KRTAP13-1Q8IUC0 172 aa9.57□□□□□ -0.88
PCDH1-203ENST00000394536 KTN1-AS1Q86SY8 53 aa9.56□□□□□ -0.88
PCDH1-203ENST00000394536 LCA10Q71F78 164 aa9.56□□□□□ -0.88
PCDH1-203ENST00000394536 LINC01558Q9Y6Z2 57 aa9.55□□□□□ -0.88
PCDH1-203ENST00000394536 LINC00483Q53H64 154 aa9.53□□□□□ -0.88
PCDH1-203ENST00000394536 Q6ZR54 194 aa9.53□□□□□ -0.88
PCDH1-203ENST00000394536 FBN3Q75N90 2809 aa9.52□□□□□ -0.89
PCDH1-203ENST00000394536 DMBT1Q9UGM3 2413 aaPredicted RBP9.51□□□□□ -0.89
PCDH1-203ENST00000394536 Q8N1X5 172 aa9.48□□□□□ -0.89
PCDH1-203ENST00000394536 KRTAP10-2P60368 255 aa9.46□□□□□ -0.9
PCDH1-203ENST00000394536 SMR3BP02814 79 aaPredicted RBP9.46□□□□□ -0.9
PCDH1-203ENST00000394536 UQCR11O14957 56 aa9.44□□□□□ -0.9
PCDH1-203ENST00000394536 MIR22HGQ0VDD5 57 aa9.43□□□□□ -0.9
PCDH1-203ENST00000394536 C9orf92A6NGG3 77 aa9.42□□□□□ -0.9
PCDH1-203ENST00000394536 PRAC1Q96KF2 57 aa9.39□□□□□ -0.91
PCDH1-203ENST00000394536 MEGF8Q7Z7M0 2845 aa9.36□□□□□ -0.91
PCDH1-203ENST00000394536 KRTAP10-1P60331 282 aa9.34□□□□□ -0.91
PCDH1-203ENST00000394536 LINC00304Q8N9R0 145 aa9.33□□□□□ -0.92
PCDH1-203ENST00000394536 FLG2Q5D862 2391 aaPredicted RBP9.32□□□□□ -0.92
PCDH1-203ENST00000394536 H3BS24 57 aa9.3□□□□□ -0.92
PCDH1-203ENST00000394536 DMAC1Q96GE9 116 aa9.3□□□□□ -0.92
PCDH1-203ENST00000394536 ASB16-AS1Q495Z4 193 aa9.29□□□□□ -0.92
PCDH1-203ENST00000394536 K7ERS5 55 aa9.27□□□□□ -0.93
PCDH1-203ENST00000394536 KRTAP13-2Q52LG2 175 aa9.26□□□□□ -0.93
PCDH1-203ENST00000394536 A6NN06 94 aa9.24□□□□□ -0.93
PCDH1-203ENST00000394536 DNAH10Q8IVF4 4471 aa9.2□□□□□ -0.94
PCDH1-203ENST00000394536 HUWE1Q7Z6Z7 4374 aaKnown RBP9.2□□□□□ -0.94
PCDH1-203ENST00000394536 ANK2Q01484 3957 aa9.19□□□□□ -0.94
PCDH1-203ENST00000394536 ADM2Q7Z4H4 148 aa9.17□□□□□ -0.94
PCDH1-203ENST00000394536 CSAG1Q6PB30 78 aa9.06□□□□□ -0.96
PCDH1-203ENST00000394536 SPATA8Q6RVD6 105 aa9.04□□□□□ -0.96
PCDH1-203ENST00000394536 A0A1B0GU33 70 aa9.04□□□□□ -0.96
PCDH1-203ENST00000394536 LINC01554Q52M75 96 aa9.04□□□□□ -0.96
PCDH1-203ENST00000394536 KRTAP13-3Q3SY46 172 aa9.02□□□□□ -0.97
PCDH1-203ENST00000394536 CRIPTQ9P021 101 aa8.99□□□□□ -0.97
PCDH1-203ENST00000394536 A0A0D9SG42 100 aa8.99□□□□□ -0.97
PCDH1-203ENST00000394536 KRTAP1-4P0C5Y4 121 aa8.98□□□□□ -0.97
PCDH1-203ENST00000394536 LYSTQ99698 3801 aa8.95□□□□□ -0.98
PCDH1-203ENST00000394536 PLECQ15149 4684 aaKnown RBP8.93□□□□□ -0.98
PCDH1-203ENST00000394536 KRTAP16-1A8MUX0 517 aa8.93□□□□□ -0.98
PCDH1-203ENST00000394536 Q6ZSA8 131 aa8.91□□□□□ -0.98
PCDH1-203ENST00000394536 DNAH9Q9NYC9 4486 aa8.88□□□□□ -0.99
PCDH1-203ENST00000394536 H1FX-AS1Q4G0G2 97 aa8.79□□□□□ -1
PCDH1-203ENST00000394536 DNAH1Q9P2D7 4330 aa8.77□□□□□ -1.01
PCDH1-203ENST00000394536 SPINT4Q6UDR6 99 aa8.74□□□□□ -1.01
PCDH1-203ENST00000394536 COX6B2Q6YFQ2 88 aa8.74□□□□□ -1.01
PCDH1-203ENST00000394536 DNAH11Q96DT5 4516 aa8.7□□□□□ -1.02
PCDH1-203ENST00000394536 STARD9Q9P2P6 4700 aa8.69□□□□□ -1.02
PCDH1-203ENST00000394536 A8MUU9 505 aa8.68□□□□□ -1.02
PCDH1-203ENST00000394536 H0YAA0 97 aa8.68□□□□□ -1.02
PCDH1-203ENST00000394536 CMYA5Q8N3K9 4069 aa8.67□□□□□ -1.02
PCDH1-203ENST00000394536 RPS29P62273 56 aaKnown RBP8.67□□□□□ -1.02
PCDH1-203ENST00000394536 DNAH7Q8WXX0 4024 aa8.66□□□□□ -1.02
PCDH1-203ENST00000394536 C20orf166-AS1Q96NR2 134 aa8.65□□□□□ -1.02
PCDH1-203ENST00000394536 KMT2AQ03164 3969 aa8.64□□□□□ -1.03
PCDH1-203ENST00000394536 DNAH8Q96JB1 4490 aa8.62□□□□□ -1.03
PCDH1-203ENST00000394536 S4R3F8 94 aa8.61□□□□□ -1.03
PCDH1-203ENST00000394536 RPL37P61927 97 aaKnown RBP8.61□□□□□ -1.03
PCDH1-203ENST00000394536 FRAS1Q86XX4 4008 aa8.6□□□□□ -1.03
PCDH1-203ENST00000394536 PRKDCP78527 4128 aaKnown RBP8.59□□□□□ -1.03
PCDH1-203ENST00000394536 DNAH3Q8TD57 4116 aa8.59□□□□□ -1.03
PCDH1-203ENST00000394536 Q5VSD8 79 aa8.58□□□□□ -1.04
PCDH1-203ENST00000394536 KRTAP25-1Q3LHN0 102 aa8.57□□□□□ -1.04
PCDH1-203ENST00000394536 VPS13DQ5THJ4 4388 aa8.55□□□□□ -1.04
PCDH1-203ENST00000394536 ROMO1P60602 79 aa8.53□□□□□ -1.04
PCDH1-203ENST00000394536 KRTAP3-1Q9BYR8 98 aa8.51□□□□□ -1.05
PCDH1-203ENST00000394536 LRP1BQ9NZR2 4599 aa8.5□□□□□ -1.05
PCDH1-203ENST00000394536 DNAH17Q9UFH2 4485 aa8.49□□□□□ -1.05
PCDH1-203ENST00000394536 DNAH2Q9P225 4427 aa8.43□□□□□ -1.06
PCDH1-203ENST00000394536 DNHD1Q96M86 4753 aa8.42□□□□□ -1.06
PCDH1-203ENST00000394536 DNAH6Q9C0G6 4158 aa8.39□□□□□ -1.07
PCDH1-203ENST00000394536 HECTD4Q9Y4D8 3996 aa8.36□□□□□ -1.07
PCDH1-203ENST00000394536 DNAH5Q8TE73 4624 aa8.35□□□□□ -1.07
PCDH1-203ENST00000394536 C10orf95Q9H7T3 257 aa8.34□□□□□ -1.07
PCDH1-203ENST00000394536 FAT1Q14517 4588 aa8.33□□□□□ -1.08
PCDH1-203ENST00000394536 XP32Q5T750 250 aa8.33□□□□□ -1.08
PCDH1-203ENST00000394536 P0C880 135 aa8.32□□□□□ -1.08
PCDH1-203ENST00000394536 R4GN34 69 aa8.28□□□□□ -1.08
PCDH1-203ENST00000394536 J3QL48 77 aa8.27□□□□□ -1.09
PCDH1-203ENST00000394536 A0A1B0GVY2 172 aa8.27□□□□□ -1.09
PCDH1-203ENST00000394536 M0QZ58 72 aa8.26□□□□□ -1.09
PCDH1-203ENST00000394536 VPS13BQ7Z7G8 4022 aa8.25□□□□□ -1.09
PCDH1-203ENST00000394536 KRTAP10-8P60410 259 aa8.23□□□□□ -1.09
PCDH1-203ENST00000394536 DYNC2H1Q8NCM8 4307 aaKnown RBP8.2□□□□□ -1.1
PCDH1-203ENST00000394536 KRTAP13-4Q3LI77 160 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms