RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 PLA2G1BP04054 148 aaKnown RBP6.56□□□□□ -1.36
TCOF1-203ENST00000394269 NOTCH2NLQ7Z3S9 236 aa6.56□□□□□ -1.36
TCOF1-203ENST00000394269 SACSQ9NZJ4 4579 aa6.55□□□□□ -1.36
TCOF1-203ENST00000394269 PKD1P98161 4303 aa6.55□□□□□ -1.36
TCOF1-203ENST00000394269 VPS13BQ7Z7G8 4022 aa6.55□□□□□ -1.36
TCOF1-203ENST00000394269 PRO0628Q9UI54 55 aa6.55□□□□□ -1.36
TCOF1-203ENST00000394269 SERP1Q9Y6X1 66 aa6.55□□□□□ -1.36
TCOF1-203ENST00000394269 ALMS1Q8TCU4 4167 aa6.55□□□□□ -1.36
TCOF1-203ENST00000394269 MMP24-AS1A0A0U1RRL7 71 aa6.54□□□□□ -1.36
TCOF1-203ENST00000394269 KRTAP29-1A8MX34 341 aaPredicted RBP6.54□□□□□ -1.36
TCOF1-203ENST00000394269 H0Y9P7 68 aa6.53□□□□□ -1.36
TCOF1-203ENST00000394269 NDUFC1O43677 76 aa6.53□□□□□ -1.36
TCOF1-203ENST00000394269 KRTAP13-2Q52LG2 175 aa6.53□□□□□ -1.36
TCOF1-203ENST00000394269 C8orf17Q9NRJ1 99 aa6.53□□□□□ -1.36
TCOF1-203ENST00000394269 A0A1B0GVX0 72 aa6.51□□□□□ -1.37
TCOF1-203ENST00000394269 SSBP3-AS1Q7Z2R9 100 aa6.51□□□□□ -1.37
TCOF1-203ENST00000394269 PRR26Q8N8Z3 221 aa6.51□□□□□ -1.37
TCOF1-203ENST00000394269 RYR3Q15413 4870 aa6.51□□□□□ -1.37
TCOF1-203ENST00000394269 RETNLBQ9BQ08 111 aa6.49□□□□□ -1.37
TCOF1-203ENST00000394269 C1orf64Q8NEQ6 169 aa6.49□□□□□ -1.37
TCOF1-203ENST00000394269 TYMSOSQ8TAI1 123 aa6.48□□□□□ -1.37
TCOF1-203ENST00000394269 FAT1Q14517 4588 aa6.48□□□□□ -1.37
TCOF1-203ENST00000394269 PCOTHQ58A44 107 aa6.48□□□□□ -1.37
TCOF1-203ENST00000394269 J3QL48 77 aa6.46□□□□□ -1.37
TCOF1-203ENST00000394269 KIAA1109Q2LD37 5005 aa6.46□□□□□ -1.38
TCOF1-203ENST00000394269 TRAV22A0A0B4J277 110 aa6.46□□□□□ -1.38
TCOF1-203ENST00000394269 KRTAP1-4P0C5Y4 121 aa6.46□□□□□ -1.38
TCOF1-203ENST00000394269 DYNC1H1Q14204 4646 aaKnown RBP6.45□□□□□ -1.38
TCOF1-203ENST00000394269 MRPL34Q9BQ48 92 aaKnown RBP6.45□□□□□ -1.38
TCOF1-203ENST00000394269 SMIM26A0A096LP01 95 aa6.44□□□□□ -1.38
TCOF1-203ENST00000394269 ZCCHC13Q8WW36 166 aaKnown RBP6.44□□□□□ -1.38
TCOF1-203ENST00000394269 CD164Q04900 197 aa6.41□□□□□ -1.38
TCOF1-203ENST00000394269 LINC00313P59037 77 aa6.41□□□□□ -1.38
TCOF1-203ENST00000394269 EPPK1P58107 5090 aaKnown RBP6.4□□□□□ -1.39
TCOF1-203ENST00000394269 ATP5EP56381 51 aaPredicted RBP6.39□□□□□ -1.39
TCOF1-203ENST00000394269 PMAIP1Q13794 54 aa6.39□□□□□ -1.39
TCOF1-203ENST00000394269 TP53AIP1Q9HCN2 124 aa6.39□□□□□ -1.39
TCOF1-203ENST00000394269 RYR2Q92736 4967 aa6.38□□□□□ -1.39
TCOF1-203ENST00000394269 A0A1B0GVY2 172 aa6.37□□□□□ -1.39
TCOF1-203ENST00000394269 Q5W150 140 aa6.37□□□□□ -1.39
TCOF1-203ENST00000394269 LIMD2Q9BT23 127 aa6.37□□□□□ -1.39
TCOF1-203ENST00000394269 PSPHP1O15172 72 aa6.36□□□□□ -1.39
TCOF1-203ENST00000394269 LINC00304Q8N9R0 145 aa6.36□□□□□ -1.39
TCOF1-203ENST00000394269 ASB16-AS1Q495Z4 193 aa6.35□□□□□ -1.39
TCOF1-203ENST00000394269 H3BPC8 53 aa6.33□□□□□ -1.4
TCOF1-203ENST00000394269 SPINK1P00995 79 aa6.33□□□□□ -1.4
TCOF1-203ENST00000394269 C8orf87E5RJ46 101 aa6.31□□□□□ -1.4
TCOF1-203ENST00000394269 APOBP04114 4563 aaKnown RBP6.31□□□□□ -1.4
TCOF1-203ENST00000394269 C9orf92A6NGG3 77 aa6.31□□□□□ -1.4
TCOF1-203ENST00000394269 Q8N9P0 234 aaPredicted RBP6.29□□□□□ -1.4
TCOF1-203ENST00000394269 FAM229AH3BQW9 127 aa6.29□□□□□ -1.4
TCOF1-203ENST00000394269 IGKV2D-30A0A075B6S6 120 aa6.28□□□□□ -1.4
TCOF1-203ENST00000394269 A8MU10 97 aa6.28□□□□□ -1.4
TCOF1-203ENST00000394269 IGKV2-30P06310 120 aa6.28□□□□□ -1.4
TCOF1-203ENST00000394269 SPTSSBQ8NFR3 76 aa6.27□□□□□ -1.41
TCOF1-203ENST00000394269 Q5VSD8 79 aa6.26□□□□□ -1.41
TCOF1-203ENST00000394269 CYP4F30PQ9H0H9 118 aa6.25□□□□□ -1.41
TCOF1-203ENST00000394269 IGLV7-46A0A075B6I9 117 aa6.24□□□□□ -1.41
TCOF1-203ENST00000394269 LOC101927531A0A1B0GV80 90 aa6.24□□□□□ -1.41
TCOF1-203ENST00000394269 SPANXA2-OT1Q8N9U9 137 aa6.24□□□□□ -1.41
TCOF1-203ENST00000394269 LRP1Q07954 4544 aaKnown RBP6.24□□□□□ -1.41
TCOF1-203ENST00000394269 KRTAP4-5Q9BYR2 181 aa6.24□□□□□ -1.41
TCOF1-203ENST00000394269 KRTAP10-4P60372 401 aaPredicted RBP6.23□□□□□ -1.41
TCOF1-203ENST00000394269 SPAG11AQ6PDA7 123 aa6.23□□□□□ -1.41
TCOF1-203ENST00000394269 COA5Q86WW8 74 aa6.23□□□□□ -1.41
TCOF1-203ENST00000394269 Q1T7F1 81 aa6.23□□□□□ -1.41
TCOF1-203ENST00000394269 MYCBP2O75592 4640 aa6.23□□□□□ -1.41
TCOF1-203ENST00000394269 RYR1P21817 5038 aa6.22□□□□□ -1.41
TCOF1-203ENST00000394269 RBM12B-AS1Q9P1G2 102 aa6.22□□□□□ -1.41
TCOF1-203ENST00000394269 FAT3Q8TDW7 4589 aa6.21□□□□□ -1.42
TCOF1-203ENST00000394269 KRTAP16-1A8MUX0 517 aa6.2□□□□□ -1.42
TCOF1-203ENST00000394269 A8MUN3 132 aa6.2□□□□□ -1.42
TCOF1-203ENST00000394269 HRES1P13985 223 aa6.19□□□□□ -1.42
TCOF1-203ENST00000394269 KRTAP13-3Q3SY46 172 aa6.18□□□□□ -1.42
TCOF1-203ENST00000394269 Q8N1X5 172 aa6.16□□□□□ -1.42
TCOF1-203ENST00000394269 Q5VV11 94 aa6.16□□□□□ -1.42
TCOF1-203ENST00000394269 CHKB-CPT1BH3BT56 60 aa6.15□□□□□ -1.42
TCOF1-203ENST00000394269 PRR15LQ9BU68 103 aa6.13□□□□□ -1.43
TCOF1-203ENST00000394269 HSPG2P98160 4391 aa6.12□□□□□ -1.43
TCOF1-203ENST00000394269 KRTAP17-1Q9BYP8 105 aa6.11□□□□□ -1.43
TCOF1-203ENST00000394269 ACYP2P14621 99 aa6.11□□□□□ -1.43
TCOF1-203ENST00000394269 RPS29P62273 56 aaKnown RBP6.11□□□□□ -1.43
TCOF1-203ENST00000394269 C7orf65Q6ZTY9 151 aa6.1□□□□□ -1.43
TCOF1-203ENST00000394269 PKHD1L1Q86WI1 4243 aa6.07□□□□□ -1.44
TCOF1-203ENST00000394269 A6NED7 52 aa6.07□□□□□ -1.44
TCOF1-203ENST00000394269 LCA10Q71F78 164 aa6.05□□□□□ -1.44
TCOF1-203ENST00000394269 HERC2O95714 4834 aa6.03□□□□□ -1.44
TCOF1-203ENST00000394269 KRTAP10-8P60410 259 aa6.03□□□□□ -1.44
TCOF1-203ENST00000394269 DMAC1Q96GE9 116 aa6.03□□□□□ -1.44
TCOF1-203ENST00000394269 SPINK7P58062 85 aa6.01□□□□□ -1.45
TCOF1-203ENST00000394269 A8MUU9 505 aa6□□□□□ -1.45
TCOF1-203ENST00000394269 C20orf166-AS1Q96NR2 134 aa6□□□□□ -1.45
TCOF1-203ENST00000394269 HERC1Q15751 4861 aa5.98□□□□□ -1.45
TCOF1-203ENST00000394269 ATP11AUNQ6ZP68 121 aa5.98□□□□□ -1.45
TCOF1-203ENST00000394269 TNXBP22105 4242 aa5.98□□□□□ -1.45
TCOF1-203ENST00000394269 KTN1-AS1Q86SY8 53 aa5.98□□□□□ -1.45
TCOF1-203ENST00000394269 ABCA13Q86UQ4 5058 aa5.97□□□□□ -1.45
TCOF1-203ENST00000394269 Q75L30 129 aa5.97□□□□□ -1.45
TCOF1-203ENST00000394269 LINC01558Q9Y6Z2 57 aa5.95□□□□□ -1.46
TCOF1-203ENST00000394269 PCLOQ9Y6V0 5065 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms