RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 PLAC8Q9NZF1 115 aa6.89□□□□□ -1.31
CUX1-204ENST00000393824 PRR26Q8N8Z3 221 aa6.88□□□□□ -1.31
CUX1-204ENST00000393824 LINC01558Q9Y6Z2 57 aa6.88□□□□□ -1.31
CUX1-204ENST00000393824 PKD1P98161 4303 aa6.88□□□□□ -1.31
CUX1-204ENST00000393824 DNAH5Q8TE73 4624 aa6.87□□□□□ -1.31
CUX1-204ENST00000393824 LINC01554Q52M75 96 aa6.87□□□□□ -1.31
CUX1-204ENST00000393824 LINC00313P59037 77 aa6.87□□□□□ -1.31
CUX1-204ENST00000393824 LINC00472Q9H8W2 130 aa6.87□□□□□ -1.31
CUX1-204ENST00000393824 RTL8CO15255 209 aa6.84□□□□□ -1.31
CUX1-204ENST00000393824 C1orf134Q5TEV5 83 aa6.83□□□□□ -1.32
CUX1-204ENST00000393824 PRAC1Q96KF2 57 aa6.83□□□□□ -1.32
CUX1-204ENST00000393824 SPRR1BP22528 89 aa6.82□□□□□ -1.32
CUX1-204ENST00000393824 A0A087WTM6 91 aa6.82□□□□□ -1.32
CUX1-204ENST00000393824 MMP24-AS1A0A0U1RRL7 71 aa6.82□□□□□ -1.32
CUX1-204ENST00000393824 H0Y9J4 135 aa6.81□□□□□ -1.32
CUX1-204ENST00000393824 SPAG11AQ6PDA7 123 aa6.81□□□□□ -1.32
CUX1-204ENST00000393824 PRLHP81277 87 aa6.8□□□□□ -1.32
CUX1-204ENST00000393824 SPINK7P58062 85 aa6.79□□□□□ -1.32
CUX1-204ENST00000393824 TP53AIP1Q9HCN2 124 aa6.79□□□□□ -1.32
CUX1-204ENST00000393824 ASB16-AS1Q495Z4 193 aa6.79□□□□□ -1.32
CUX1-204ENST00000393824 PLA2G1BP04054 148 aaKnown RBP6.78□□□□□ -1.32
CUX1-204ENST00000393824 KRTAP10-2P60368 255 aa6.78□□□□□ -1.32
CUX1-204ENST00000393824 DNAH8Q96JB1 4490 aa6.78□□□□□ -1.32
CUX1-204ENST00000393824 PCOTHQ58A44 107 aa6.77□□□□□ -1.33
CUX1-204ENST00000393824 PANO1I0J062 215 aa6.77□□□□□ -1.33
CUX1-204ENST00000393824 A0A096LNI7 61 aa6.76□□□□□ -1.33
CUX1-204ENST00000393824 LRP1BQ9NZR2 4599 aa6.76□□□□□ -1.33
CUX1-204ENST00000393824 CHTF8P0CG12 524 aa6.76□□□□□ -1.33
CUX1-204ENST00000393824 HRES1P13985 223 aa6.75□□□□□ -1.33
CUX1-204ENST00000393824 IGKV2-24A0A0C4DH68 120 aa6.74□□□□□ -1.33
CUX1-204ENST00000393824 ADM2Q7Z4H4 148 aa6.74□□□□□ -1.33
CUX1-204ENST00000393824 C14orf177Q52M58 125 aa6.72□□□□□ -1.33
CUX1-204ENST00000393824 DYNC1H1Q14204 4646 aaKnown RBP6.72□□□□□ -1.33
CUX1-204ENST00000393824 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.71□□□□□ -1.33
CUX1-204ENST00000393824 SRRM2Q9UQ35 2752 aaKnown RBP6.7□□□□□ -1.34
CUX1-204ENST00000393824 A0A087X002 238 aa6.7□□□□□ -1.34
CUX1-204ENST00000393824 Q96NJ1 140 aa6.7□□□□□ -1.34
CUX1-204ENST00000393824 IGLV5-52A0A0A0MRZ9 124 aa6.69□□□□□ -1.34
CUX1-204ENST00000393824 C8orf17Q9NRJ1 99 aa6.68□□□□□ -1.34
CUX1-204ENST00000393824 EPPK1P58107 5090 aaKnown RBP6.67□□□□□ -1.34
CUX1-204ENST00000393824 KRTAP11-1Q8IUC1 163 aa6.66□□□□□ -1.34
CUX1-204ENST00000393824 A0A1B0GVY2 172 aa6.65□□□□□ -1.34
CUX1-204ENST00000393824 KRTAP10-1P60331 282 aa6.65□□□□□ -1.34
CUX1-204ENST00000393824 KRTAP13-1Q8IUC0 172 aa6.64□□□□□ -1.35
CUX1-204ENST00000393824 SPACA4Q8TDM5 124 aa6.64□□□□□ -1.35
CUX1-204ENST00000393824 APOBP04114 4563 aaKnown RBP6.64□□□□□ -1.35
CUX1-204ENST00000393824 MRPL34Q9BQ48 92 aaKnown RBP6.63□□□□□ -1.35
CUX1-204ENST00000393824 FAT1Q14517 4588 aa6.63□□□□□ -1.35
CUX1-204ENST00000393824 A0A1B0GVX0 72 aa6.62□□□□□ -1.35
CUX1-204ENST00000393824 RETNLBQ9BQ08 111 aa6.62□□□□□ -1.35
CUX1-204ENST00000393824 VPS13BQ7Z7G8 4022 aa6.62□□□□□ -1.35
CUX1-204ENST00000393824 IGHV6-1A0A0B4J1U7 121 aa6.59□□□□□ -1.35
CUX1-204ENST00000393824 LINC00483Q53H64 154 aa6.59□□□□□ -1.35
CUX1-204ENST00000393824 ACYP2P14621 99 aa6.58□□□□□ -1.36
CUX1-204ENST00000393824 CIRBP-AS1Q8TBR5 109 aa6.58□□□□□ -1.36
CUX1-204ENST00000393824 Q6ZSA8 131 aa6.58□□□□□ -1.36
CUX1-204ENST00000393824 KRTAP13-3Q3SY46 172 aa6.56□□□□□ -1.36
CUX1-204ENST00000393824 SPATA8Q6RVD6 105 aa6.56□□□□□ -1.36
CUX1-204ENST00000393824 ZNF706Q9Y5V0 76 aaPredicted RBP6.56□□□□□ -1.36
CUX1-204ENST00000393824 CSAG1Q6PB30 78 aa6.56□□□□□ -1.36
CUX1-204ENST00000393824 KIAA1109Q2LD37 5005 aa6.56□□□□□ -1.36
CUX1-204ENST00000393824 CDK2AP2O75956 126 aa6.55□□□□□ -1.36
CUX1-204ENST00000393824 HSPG2P98160 4391 aa6.55□□□□□ -1.36
CUX1-204ENST00000393824 IGLV9-49A0A0B4J1Y8 123 aa6.54□□□□□ -1.36
CUX1-204ENST00000393824 NOTCH2NLQ7Z3S9 236 aa6.54□□□□□ -1.36
CUX1-204ENST00000393824 Q5W150 140 aa6.53□□□□□ -1.36
CUX1-204ENST00000393824 DMAC1Q96GE9 116 aa6.52□□□□□ -1.37
CUX1-204ENST00000393824 A0A1B0GU69 56 aa6.51□□□□□ -1.37
CUX1-204ENST00000393824 PSORS1C2Q9UIG4 136 aa6.49□□□□□ -1.37
CUX1-204ENST00000393824 RYR1P21817 5038 aa6.47□□□□□ -1.37
CUX1-204ENST00000393824 SMR3BP02814 79 aaPredicted RBP6.47□□□□□ -1.37
CUX1-204ENST00000393824 KRTAP17-1Q9BYP8 105 aa6.47□□□□□ -1.37
CUX1-204ENST00000393824 UQCR11O14957 56 aa6.47□□□□□ -1.37
CUX1-204ENST00000393824 MIR22HGQ0VDD5 57 aa6.47□□□□□ -1.37
CUX1-204ENST00000393824 ZNF861PO60384 105 aa6.44□□□□□ -1.38
CUX1-204ENST00000393824 ROMO1P60602 79 aa6.42□□□□□ -1.38
CUX1-204ENST00000393824 FAM229AH3BQW9 127 aa6.38□□□□□ -1.39
CUX1-204ENST00000393824 IGLV7-43P04211 117 aa6.38□□□□□ -1.39
CUX1-204ENST00000393824 KRTAP10-4P60372 401 aaPredicted RBP6.38□□□□□ -1.39
CUX1-204ENST00000393824 SPINK6Q6UWN8 80 aa6.38□□□□□ -1.39
CUX1-204ENST00000393824 ANAPC11Q9NYG5 84 aa6.38□□□□□ -1.39
CUX1-204ENST00000393824 LRP1Q07954 4544 aaKnown RBP6.38□□□□□ -1.39
CUX1-204ENST00000393824 IGKV2-30P06310 120 aa6.37□□□□□ -1.39
CUX1-204ENST00000393824 MYCBP2O75592 4640 aa6.37□□□□□ -1.39
CUX1-204ENST00000393824 SSBP3-AS1Q7Z2R9 100 aa6.36□□□□□ -1.39
CUX1-204ENST00000393824 FLG2Q5D862 2391 aaPredicted RBP6.33□□□□□ -1.4
CUX1-204ENST00000393824 PKHD1L1Q86WI1 4243 aa6.32□□□□□ -1.4
CUX1-204ENST00000393824 BIRC6Q9NR09 4857 aa6.32□□□□□ -1.4
CUX1-204ENST00000393824 KRTAP25-1Q3LHN0 102 aa6.32□□□□□ -1.4
CUX1-204ENST00000393824 KRTAP1-4P0C5Y4 121 aa6.28□□□□□ -1.4
CUX1-204ENST00000393824 Q5VSD8 79 aa6.28□□□□□ -1.4
CUX1-204ENST00000393824 KRTAP4-5Q9BYR2 181 aa6.27□□□□□ -1.41
CUX1-204ENST00000393824 ABCA13Q86UQ4 5058 aa6.26□□□□□ -1.41
CUX1-204ENST00000393824 HERC2O95714 4834 aa6.24□□□□□ -1.41
CUX1-204ENST00000393824 IGKV2D-30A0A075B6S6 120 aa6.24□□□□□ -1.41
CUX1-204ENST00000393824 KRTAP16-1A8MUX0 517 aa6.24□□□□□ -1.41
CUX1-204ENST00000393824 P0C880 135 aa6.24□□□□□ -1.41
CUX1-204ENST00000393824 TNXBP22105 4242 aa6.23□□□□□ -1.41
CUX1-204ENST00000393824 KRTAP13-2Q52LG2 175 aa6.23□□□□□ -1.41
CUX1-204ENST00000393824 FAT3Q8TDW7 4589 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms