RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TYMSOSQ8TAI1 123 aa10.68□□□□□ -0.7
CCDC88C-203ENST00000389856 APOBP04114 4563 aaKnown RBP10.68□□□□□ -0.7
CCDC88C-203ENST00000389856 OXTP01178 125 aa10.67□□□□□ -0.7
CCDC88C-203ENST00000389856 MP68P56378 58 aa10.67□□□□□ -0.7
CCDC88C-203ENST00000389856 C4orf48Q5BLP8 95 aa10.67□□□□□ -0.7
CCDC88C-203ENST00000389856 VPS13BQ7Z7G8 4022 aa10.65□□□□□ -0.7
CCDC88C-203ENST00000389856 Q5VSD8 79 aa10.64□□□□□ -0.71
CCDC88C-203ENST00000389856 Q96NJ1 140 aa10.64□□□□□ -0.71
CCDC88C-203ENST00000389856 LIMD2Q9BT23 127 aa10.63□□□□□ -0.71
CCDC88C-203ENST00000389856 MMP24-AS1A0A0U1RRL7 71 aa10.62□□□□□ -0.71
CCDC88C-203ENST00000389856 SMIM26A0A096LP01 95 aa10.61□□□□□ -0.71
CCDC88C-203ENST00000389856 SPAG11AQ6PDA7 123 aa10.61□□□□□ -0.71
CCDC88C-203ENST00000389856 ASB16-AS1Q495Z4 193 aa10.6□□□□□ -0.71
CCDC88C-203ENST00000389856 Q5XG85 94 aa10.6□□□□□ -0.71
CCDC88C-203ENST00000389856 SPINK1P00995 79 aa10.58□□□□□ -0.72
CCDC88C-203ENST00000389856 hDV103S1A0JD37 113 aa10.58□□□□□ -0.72
CCDC88C-203ENST00000389856 PRR26Q8N8Z3 221 aa10.58□□□□□ -0.72
CCDC88C-203ENST00000389856 TP53AIP1Q9HCN2 124 aa10.58□□□□□ -0.72
CCDC88C-203ENST00000389856 LINC00304Q8N9R0 145 aa10.56□□□□□ -0.72
CCDC88C-203ENST00000389856 A0A1B0GVX0 72 aa10.55□□□□□ -0.72
CCDC88C-203ENST00000389856 H0Y9P7 68 aa10.55□□□□□ -0.72
CCDC88C-203ENST00000389856 RPS29P62273 56 aaKnown RBP10.55□□□□□ -0.72
CCDC88C-203ENST00000389856 C8orf17Q9NRJ1 99 aa10.55□□□□□ -0.72
CCDC88C-203ENST00000389856 Q8N1X5 172 aa10.54□□□□□ -0.72
CCDC88C-203ENST00000389856 SVIPQ8NHG7 77 aa10.54□□□□□ -0.72
CCDC88C-203ENST00000389856 TRAV22A0A0B4J277 110 aa10.53□□□□□ -0.72
CCDC88C-203ENST00000389856 CYP4F30PQ9H0H9 118 aa10.53□□□□□ -0.72
CCDC88C-203ENST00000389856 LINC00208Q96KT6 92 aa10.51□□□□□ -0.73
CCDC88C-203ENST00000389856 KIAA1109Q2LD37 5005 aa10.51□□□□□ -0.73
CCDC88C-203ENST00000389856 SPANXA2-OT1Q8N9U9 137 aa10.5□□□□□ -0.73
CCDC88C-203ENST00000389856 HERC2O95714 4834 aa10.47□□□□□ -0.73
CCDC88C-203ENST00000389856 FAT1Q14517 4588 aa10.46□□□□□ -0.73
CCDC88C-203ENST00000389856 IGHV6-1A0A0B4J1U7 121 aa10.45□□□□□ -0.74
CCDC88C-203ENST00000389856 C1orf64Q8NEQ6 169 aa10.45□□□□□ -0.74
CCDC88C-203ENST00000389856 MRPL34Q9BQ48 92 aaKnown RBP10.44□□□□□ -0.74
CCDC88C-203ENST00000389856 C8orf87E5RJ46 101 aa10.42□□□□□ -0.74
CCDC88C-203ENST00000389856 C1orf195Q5TG92 126 aa10.42□□□□□ -0.74
CCDC88C-203ENST00000389856 FP248Q71RG6 208 aaPredicted RBP10.42□□□□□ -0.74
CCDC88C-203ENST00000389856 HSPG2P98160 4391 aa10.4□□□□□ -0.74
CCDC88C-203ENST00000389856 C4orf26Q17RF5 130 aa10.4□□□□□ -0.74
CCDC88C-203ENST00000389856 RYR1P21817 5038 aa10.4□□□□□ -0.74
CCDC88C-203ENST00000389856 PKHD1L1Q86WI1 4243 aa10.38□□□□□ -0.75
CCDC88C-203ENST00000389856 KRTAP10-8P60410 259 aa10.35□□□□□ -0.75
CCDC88C-203ENST00000389856 NDUFS5O43920 106 aa10.34□□□□□ -0.75
CCDC88C-203ENST00000389856 PCLOQ9Y6V0 5065 aa10.33□□□□□ -0.76
CCDC88C-203ENST00000389856 IGLV7-46A0A075B6I9 117 aa10.31□□□□□ -0.76
CCDC88C-203ENST00000389856 LINC00313P59037 77 aa10.29□□□□□ -0.76
CCDC88C-203ENST00000389856 LOC101927531A0A1B0GV80 90 aa10.28□□□□□ -0.76
CCDC88C-203ENST00000389856 NOTCH2NLQ7Z3S9 236 aa10.28□□□□□ -0.76
CCDC88C-203ENST00000389856 Q1T7F1 81 aa10.27□□□□□ -0.77
CCDC88C-203ENST00000389856 KRTAP17-1Q9BYP8 105 aa10.27□□□□□ -0.77
CCDC88C-203ENST00000389856 PRR4Q16378 134 aa10.25□□□□□ -0.77
CCDC88C-203ENST00000389856 V9GYY9 64 aa10.25□□□□□ -0.77
CCDC88C-203ENST00000389856 MPLKIPQ8TAP9 179 aa10.22□□□□□ -0.77
CCDC88C-203ENST00000389856 ABCA13Q86UQ4 5058 aa10.21□□□□□ -0.77
CCDC88C-203ENST00000389856 KRTAP13-3Q3SY46 172 aa10.21□□□□□ -0.78
CCDC88C-203ENST00000389856 Q8N9P0 234 aaPredicted RBP10.2□□□□□ -0.78
CCDC88C-203ENST00000389856 KRTAP4-5Q9BYR2 181 aa10.18□□□□□ -0.78
CCDC88C-203ENST00000389856 PCOTHQ58A44 107 aa10.17□□□□□ -0.78
CCDC88C-203ENST00000389856 MT1HL1P0DM35 61 aa10.15□□□□□ -0.78
CCDC88C-203ENST00000389856 FLG2Q5D862 2391 aaPredicted RBP10.15□□□□□ -0.79
CCDC88C-203ENST00000389856 Q5W150 140 aa10.13□□□□□ -0.79
CCDC88C-203ENST00000389856 COA5Q86WW8 74 aa10.12□□□□□ -0.79
CCDC88C-203ENST00000389856 RETNLBQ9BQ08 111 aa10.11□□□□□ -0.79
CCDC88C-203ENST00000389856 PRO0628Q9UI54 55 aa10.1□□□□□ -0.79
CCDC88C-203ENST00000389856 KRTAP16-1A8MUX0 517 aa10.09□□□□□ -0.79
CCDC88C-203ENST00000389856 FAT3Q8TDW7 4589 aa10.07□□□□□ -0.8
CCDC88C-203ENST00000389856 LRP1Q07954 4544 aaKnown RBP10.06□□□□□ -0.8
CCDC88C-203ENST00000389856 TNXBP22105 4242 aa10.06□□□□□ -0.8
CCDC88C-203ENST00000389856 IGKV2-30P06310 120 aa10.02□□□□□ -0.81
CCDC88C-203ENST00000389856 DMBT1Q9UGM3 2413 aaPredicted RBP10.02□□□□□ -0.81
CCDC88C-203ENST00000389856 C9orf92A6NGG3 77 aa10.01□□□□□ -0.81
CCDC88C-203ENST00000389856 J3QL48 77 aa10.01□□□□□ -0.81
CCDC88C-203ENST00000389856 HRES1P13985 223 aa9.99□□□□□ -0.81
CCDC88C-203ENST00000389856 ACYP2P14621 99 aa9.98□□□□□ -0.81
CCDC88C-203ENST00000389856 BRK1Q8WUW1 75 aa9.97□□□□□ -0.81
CCDC88C-203ENST00000389856 C20orf166-AS1Q96NR2 134 aa9.96□□□□□ -0.81
CCDC88C-203ENST00000389856 A8MUU9 505 aa9.95□□□□□ -0.82
CCDC88C-203ENST00000389856 PSPHP1O15172 72 aa9.95□□□□□ -0.82
CCDC88C-203ENST00000389856 DMAC1Q96GE9 116 aa9.95□□□□□ -0.82
CCDC88C-203ENST00000389856 A8MUN3 132 aa9.93□□□□□ -0.82
CCDC88C-203ENST00000389856 MYCBP2O75592 4640 aa9.93□□□□□ -0.82
CCDC88C-203ENST00000389856 LINC01558Q9Y6Z2 57 aa9.93□□□□□ -0.82
CCDC88C-203ENST00000389856 Q5VV11 94 aa9.91□□□□□ -0.82
CCDC88C-203ENST00000389856 Q75L30 129 aa9.9□□□□□ -0.82
CCDC88C-203ENST00000389856 PRR15LQ9BU68 103 aa9.89□□□□□ -0.83
CCDC88C-203ENST00000389856 LCE2DQ5TA82 110 aaPredicted RBP9.85□□□□□ -0.83
CCDC88C-203ENST00000389856 TPRXLQ17RH7 258 aa9.84□□□□□ -0.83
CCDC88C-203ENST00000389856 CHKB-CPT1BH3BT56 60 aa9.82□□□□□ -0.84
CCDC88C-203ENST00000389856 IGKV2D-30A0A075B6S6 120 aa9.81□□□□□ -0.84
CCDC88C-203ENST00000389856 ATP11AUNQ6ZP68 121 aa9.81□□□□□ -0.84
CCDC88C-203ENST00000389856 C7orf65Q6ZTY9 151 aa9.81□□□□□ -0.84
CCDC88C-203ENST00000389856 HERC1Q15751 4861 aa9.8□□□□□ -0.84
CCDC88C-203ENST00000389856 XP32Q5T750 250 aa9.79□□□□□ -0.84
CCDC88C-203ENST00000389856 RPL37P61927 97 aaKnown RBP9.78□□□□□ -0.84
CCDC88C-203ENST00000389856 A6NED7 52 aa9.7□□□□□ -0.86
CCDC88C-203ENST00000389856 CDC42SE1Q9NRR8 79 aa9.65□□□□□ -0.86
CCDC88C-203ENST00000389856 SPINK7P58062 85 aa9.63□□□□□ -0.87
CCDC88C-203ENST00000389856 SPTSSBQ8NFR3 76 aa9.59□□□□□ -0.87
CCDC88C-203ENST00000389856 LCA10Q71F78 164 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms