RNA–Protein interactions for RNA: ENST00000377047.8

GPC6-201, Transcript of glypican 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC6, Length 6,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-201ENST00000377047 HIVEP1P15822 2718 aa7.5□□□□□ -1.21
GPC6-201ENST00000377047 VCANP13611 3396 aa7.5□□□□□ -1.21
GPC6-201ENST00000377047 REV3LO60673 3130 aa7.49□□□□□ -1.21
GPC6-201ENST00000377047 FLNCQ14315 2725 aa7.49□□□□□ -1.21
GPC6-201ENST00000377047 BOD1L1Q8NFC6 3051 aa7.44□□□□□ -1.22
GPC6-201ENST00000377047 DMXL2Q8TDJ6 3036 aa7.43□□□□□ -1.22
GPC6-201ENST00000377047 APCP25054 2843 aa7.41□□□□□ -1.22
GPC6-201ENST00000377047 ADGRG4Q8IZF6 3080 aa7.38□□□□□ -1.23
GPC6-201ENST00000377047 EYSQ5T1H1 3165 aa7.38□□□□□ -1.23
GPC6-201ENST00000377047 TENM4Q6N022 2769 aa7.38□□□□□ -1.23
GPC6-201ENST00000377047 XP32Q5T750 250 aa7.36□□□□□ -1.23
GPC6-201ENST00000377047 KRTAP1-4P0C5Y4 121 aa7.35□□□□□ -1.23
GPC6-201ENST00000377047 A0A1B0GVY2 172 aa7.35□□□□□ -1.23
GPC6-201ENST00000377047 CFAP47Q6ZTR5 3102 aa7.35□□□□□ -1.23
GPC6-201ENST00000377047 H3BS24 57 aa7.34□□□□□ -1.23
GPC6-201ENST00000377047 TNRC18O15417 2968 aaPredicted RBP7.34□□□□□ -1.23
GPC6-201ENST00000377047 TNP1P09430 55 aa7.33□□□□□ -1.24
GPC6-201ENST00000377047 SPTBN5Q9NRC6 3674 aaKnown RBP7.32□□□□□ -1.24
GPC6-201ENST00000377047 ASH1LQ9NR48 2969 aaKnown RBP7.32□□□□□ -1.24
GPC6-201ENST00000377047 KRTAP25-1Q3LHN0 102 aa7.3□□□□□ -1.24
GPC6-201ENST00000377047 USP34Q70CQ2 3546 aa7.3□□□□□ -1.24
GPC6-201ENST00000377047 NBEAQ8NFP9 2946 aa7.29□□□□□ -1.24
GPC6-201ENST00000377047 ZZEF1O43149 2961 aa7.27□□□□□ -1.25
GPC6-201ENST00000377047 KRTAP10-8P60410 259 aa7.24□□□□□ -1.25
GPC6-201ENST00000377047 CELSR2Q9HCU4 2923 aa7.23□□□□□ -1.25
GPC6-201ENST00000377047 TPRXLQ17RH7 258 aa7.23□□□□□ -1.25
GPC6-201ENST00000377047 A6NN06 94 aa7.23□□□□□ -1.25
GPC6-201ENST00000377047 SPEGQ15772 3267 aa7.22□□□□□ -1.25
GPC6-201ENST00000377047 NIPBLQ6KC79 2804 aaeCLIP7.21□□□□□ -1.26
GPC6-201ENST00000377047 DMXL1Q9Y485 3027 aa7.17□□□□□ -1.26
GPC6-201ENST00000377047 KRTAP10-10P60014 251 aa7.17□□□□□ -1.26
GPC6-201ENST00000377047 DCHS2Q6V1P9 2916 aa7.16□□□□□ -1.26
GPC6-201ENST00000377047 C10orf95Q9H7T3 257 aa7.15□□□□□ -1.26
GPC6-201ENST00000377047 KRTAP13-3Q3SY46 172 aa7.1□□□□□ -1.27
GPC6-201ENST00000377047 ZANQ9Y493 2812 aa7.09□□□□□ -1.27
GPC6-201ENST00000377047 HRNRQ86YZ3 2850 aaPredicted RBP7.07□□□□□ -1.28
GPC6-201ENST00000377047 KRTAP16-1A8MUX0 517 aa7.06□□□□□ -1.28
GPC6-201ENST00000377047 NDUFAF8A1L188 74 aa7.02□□□□□ -1.29
GPC6-201ENST00000377047 NF1P21359 2839 aa7.02□□□□□ -1.29
GPC6-201ENST00000377047 TENM2Q9NT68 2774 aa7.01□□□□□ -1.29
GPC6-201ENST00000377047 PRO2289Q9P1D8 64 aa7□□□□□ -1.29
GPC6-201ENST00000377047 TENM1Q9UKZ4 2725 aa7□□□□□ -1.29
GPC6-201ENST00000377047 PP632Q6XCG6 107 aa7□□□□□ -1.29
GPC6-201ENST00000377047 H0YAA0 97 aa6.96□□□□□ -1.3
GPC6-201ENST00000377047 LOC400499M0QZD8 3231 aa6.95□□□□□ -1.3
GPC6-201ENST00000377047 FBN2P35556 2912 aa6.95□□□□□ -1.3
GPC6-201ENST00000377047 P0C880 135 aa6.91□□□□□ -1.3
GPC6-201ENST00000377047 CELSR1Q9NYQ6 3014 aa6.9□□□□□ -1.31
GPC6-201ENST00000377047 TENM3Q9P273 2699 aa6.88□□□□□ -1.31
GPC6-201ENST00000377047 MYO15AQ9UKN7 3530 aa6.83□□□□□ -1.32
GPC6-201ENST00000377047 MXRA5Q9NR99 2828 aa6.79□□□□□ -1.32
GPC6-201ENST00000377047 WDFY3Q8IZQ1 3526 aa6.78□□□□□ -1.32
GPC6-201ENST00000377047 RELNP78509 3460 aa6.77□□□□□ -1.33
GPC6-201ENST00000377047 NBPF19A0A087WUL8 3843 aa6.77□□□□□ -1.33
GPC6-201ENST00000377047 ASPMQ8IZT6 3477 aa6.75□□□□□ -1.33
GPC6-201ENST00000377047 PKD1L1Q8TDX9 2849 aa6.74□□□□□ -1.33
GPC6-201ENST00000377047 TGP01266 2768 aa6.7□□□□□ -1.34
GPC6-201ENST00000377047 DCHS1Q96JQ0 3298 aa6.67□□□□□ -1.34
GPC6-201ENST00000377047 PDZD2O15018 2839 aa6.66□□□□□ -1.34
GPC6-201ENST00000377047 VWFP04275 2813 aa6.65□□□□□ -1.34
GPC6-201ENST00000377047 KRTAP12-2P59991 146 aa6.62□□□□□ -1.35
GPC6-201ENST00000377047 LAMA5O15230 3695 aa6.57□□□□□ -1.36
GPC6-201ENST00000377047 ZFHX4Q86UP3 3567 aa6.54□□□□□ -1.36
GPC6-201ENST00000377047 KRTAP13-4Q3LI77 160 aa6.51□□□□□ -1.37
GPC6-201ENST00000377047 ANK3Q12955 4377 aaKnown RBP6.5□□□□□ -1.37
GPC6-201ENST00000377047 ZFHX3Q15911 3703 aa6.48□□□□□ -1.37
GPC6-201ENST00000377047 KRTAP3-1Q9BYR8 98 aa6.48□□□□□ -1.37
GPC6-201ENST00000377047 OTOGQ6ZRI0 2925 aa6.47□□□□□ -1.37
GPC6-201ENST00000377047 KRTAP12-1P59990 96 aa6.47□□□□□ -1.37
GPC6-201ENST00000377047 CSMD1Q96PZ7 3565 aa6.41□□□□□ -1.38
GPC6-201ENST00000377047 FBN1P35555 2871 aaKnown RBP6.4□□□□□ -1.38
GPC6-201ENST00000377047 DMDP11532 3685 aa6.39□□□□□ -1.39
GPC6-201ENST00000377047 MT1HL1P0DM35 61 aa6.38□□□□□ -1.39
GPC6-201ENST00000377047 KRTAP15-1Q3LI76 137 aa6.34□□□□□ -1.4
GPC6-201ENST00000377047 KRTAP4-5Q9BYR2 181 aa6.3□□□□□ -1.4
GPC6-201ENST00000377047 SMG1Q96Q15 3661 aaKnown RBP6.3□□□□□ -1.4
GPC6-201ENST00000377047 CSMD2Q7Z408 3487 aa6.25□□□□□ -1.41
GPC6-201ENST00000377047 KRTAP10-6P60371 365 aaPredicted RBP6.25□□□□□ -1.41
GPC6-201ENST00000377047 SRRM2Q9UQ35 2752 aaKnown RBP6.23□□□□□ -1.41
GPC6-201ENST00000377047 FBN3Q75N90 2809 aa6.22□□□□□ -1.41
GPC6-201ENST00000377047 TRRAPQ9Y4A5 3859 aa6.2□□□□□ -1.42
GPC6-201ENST00000377047 HUWE1Q7Z6Z7 4374 aaKnown RBP6.18□□□□□ -1.42
GPC6-201ENST00000377047 SVEP1Q4LDE5 3571 aa6.17□□□□□ -1.42
GPC6-201ENST00000377047 MUC3AQ02505 3323 aa6.16□□□□□ -1.42
GPC6-201ENST00000377047 MEGF8Q7Z7M0 2845 aa6.16□□□□□ -1.42
GPC6-201ENST00000377047 KRTAP10-4P60372 401 aaPredicted RBP6.15□□□□□ -1.43
GPC6-201ENST00000377047 SPENQ96T58 3664 aaKnown RBP6.15□□□□□ -1.43
GPC6-201ENST00000377047 ALMS1Q8TCU4 4167 aa6.12□□□□□ -1.43
GPC6-201ENST00000377047 CRCT1Q9UGL9 99 aa6.11□□□□□ -1.43
GPC6-201ENST00000377047 KRTAP10-12P60413 245 aa6.1□□□□□ -1.43
GPC6-201ENST00000377047 COL7A1Q02388 2944 aa6.09□□□□□ -1.44
GPC6-201ENST00000377047 KRTAP3-3Q9BYR6 98 aa6.06□□□□□ -1.44
GPC6-201ENST00000377047 BSNQ9UPA5 3926 aa6.03□□□□□ -1.44
GPC6-201ENST00000377047 KRTAP3-2Q9BYR7 98 aa6.02□□□□□ -1.45
GPC6-201ENST00000377047 CUBNO60494 3623 aa6□□□□□ -1.45
GPC6-201ENST00000377047 VPS13CQ709C8 3753 aa5.88□□□□□ -1.47
GPC6-201ENST00000377047 KRTAP12-3P60328 96 aa5.87□□□□□ -1.47
GPC6-201ENST00000377047 LCE3AQ5TA76 89 aa5.83□□□□□ -1.48
GPC6-201ENST00000377047 DNAH9Q9NYC9 4486 aa5.81□□□□□ -1.48
GPC6-201ENST00000377047 LORP23490 312 aaPredicted RBP5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms