RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 MOBPQ13875 183 aa9.27□□□□□ -0.92
CCDC40-202ENST00000374876 ZCCHC13Q8WW36 166 aaKnown RBP9.27□□□□□ -0.92
CCDC40-202ENST00000374876 ABCA13Q86UQ4 5058 aa9.27□□□□□ -0.93
CCDC40-202ENST00000374876 NDUFB1O75438 58 aa9.27□□□□□ -0.93
CCDC40-202ENST00000374876 ANAPC11Q9NYG5 84 aa9.26□□□□□ -0.93
CCDC40-202ENST00000374876 MP68P56378 58 aa9.26□□□□□ -0.93
CCDC40-202ENST00000374876 Q5XG85 94 aa9.24□□□□□ -0.93
CCDC40-202ENST00000374876 Q96NJ1 140 aa9.24□□□□□ -0.93
CCDC40-202ENST00000374876 IGLV7-43P04211 117 aa9.23□□□□□ -0.93
CCDC40-202ENST00000374876 PCLOQ9Y6V0 5065 aa9.22□□□□□ -0.93
CCDC40-202ENST00000374876 SMIM26A0A096LP01 95 aa9.22□□□□□ -0.93
CCDC40-202ENST00000374876 MMP24-AS1A0A0U1RRL7 71 aa9.21□□□□□ -0.93
CCDC40-202ENST00000374876 C4orf26Q17RF5 130 aa9.21□□□□□ -0.94
CCDC40-202ENST00000374876 FLG2Q5D862 2391 aaPredicted RBP9.19□□□□□ -0.94
CCDC40-202ENST00000374876 hDV103S1A0JD37 113 aa9.19□□□□□ -0.94
CCDC40-202ENST00000374876 H0Y9P7 68 aa9.19□□□□□ -0.94
CCDC40-202ENST00000374876 LINC00208Q96KT6 92 aa9.19□□□□□ -0.94
CCDC40-202ENST00000374876 H3BPC8 53 aa9.15□□□□□ -0.94
CCDC40-202ENST00000374876 TRAV22A0A0B4J277 110 aa9.15□□□□□ -0.94
CCDC40-202ENST00000374876 FP248Q71RG6 208 aaPredicted RBP9.15□□□□□ -0.94
CCDC40-202ENST00000374876 IGHV6-1A0A0B4J1U7 121 aa9.14□□□□□ -0.95
CCDC40-202ENST00000374876 A0A1B0GVX0 72 aa9.14□□□□□ -0.95
CCDC40-202ENST00000374876 C8orf17Q9NRJ1 99 aa9.14□□□□□ -0.95
CCDC40-202ENST00000374876 FAM229BQ4G0N7 80 aa9.12□□□□□ -0.95
CCDC40-202ENST00000374876 ASB16-AS1Q495Z4 193 aa9.11□□□□□ -0.95
CCDC40-202ENST00000374876 MYCBP2O75592 4640 aa9.11□□□□□ -0.95
CCDC40-202ENST00000374876 C1orf64Q8NEQ6 169 aa9.1□□□□□ -0.95
CCDC40-202ENST00000374876 PRR4Q16378 134 aa9.1□□□□□ -0.95
CCDC40-202ENST00000374876 TP53AIP1Q9HCN2 124 aa9.1□□□□□ -0.95
CCDC40-202ENST00000374876 SPINK6Q6UWN8 80 aa9.09□□□□□ -0.95
CCDC40-202ENST00000374876 CYP4F30PQ9H0H9 118 aa9.09□□□□□ -0.95
CCDC40-202ENST00000374876 SSBP3-AS1Q7Z2R9 100 aa9.08□□□□□ -0.96
CCDC40-202ENST00000374876 CD164Q04900 197 aa9.07□□□□□ -0.96
CCDC40-202ENST00000374876 PKHD1L1Q86WI1 4243 aa9.06□□□□□ -0.96
CCDC40-202ENST00000374876 NDUFS5O43920 106 aa9.06□□□□□ -0.96
CCDC40-202ENST00000374876 LRP1Q07954 4544 aaKnown RBP9.06□□□□□ -0.96
CCDC40-202ENST00000374876 SPANXA2-OT1Q8N9U9 137 aa9.04□□□□□ -0.96
CCDC40-202ENST00000374876 MPLKIPQ8TAP9 179 aa9.04□□□□□ -0.96
CCDC40-202ENST00000374876 MRPL34Q9BQ48 92 aaKnown RBP9.04□□□□□ -0.96
CCDC40-202ENST00000374876 A0A087X002 238 aa9.02□□□□□ -0.97
CCDC40-202ENST00000374876 NOTCH2NLQ7Z3S9 236 aa9.02□□□□□ -0.97
CCDC40-202ENST00000374876 J3QL48 77 aa8.98□□□□□ -0.97
CCDC40-202ENST00000374876 FAT3Q8TDW7 4589 aa8.98□□□□□ -0.97
CCDC40-202ENST00000374876 KRTAP13-2Q52LG2 175 aa8.97□□□□□ -0.97
CCDC40-202ENST00000374876 PCOTHQ58A44 107 aa8.95□□□□□ -0.98
CCDC40-202ENST00000374876 DMBT1Q9UGM3 2413 aaPredicted RBP8.94□□□□□ -0.98
CCDC40-202ENST00000374876 KRTAP1-4P0C5Y4 121 aa8.93□□□□□ -0.98
CCDC40-202ENST00000374876 MT1HL1P0DM35 61 aa8.93□□□□□ -0.98
CCDC40-202ENST00000374876 IGLV7-46A0A075B6I9 117 aa8.92□□□□□ -0.98
CCDC40-202ENST00000374876 C8orf87E5RJ46 101 aa8.92□□□□□ -0.98
CCDC40-202ENST00000374876 Q1T7F1 81 aa8.91□□□□□ -0.98
CCDC40-202ENST00000374876 PRR26Q8N8Z3 221 aa8.91□□□□□ -0.98
CCDC40-202ENST00000374876 KRTAP10-8P60410 259 aa8.88□□□□□ -0.99
CCDC40-202ENST00000374876 C1orf195Q5TG92 126 aa8.88□□□□□ -0.99
CCDC40-202ENST00000374876 LINC00313P59037 77 aa8.88□□□□□ -0.99
CCDC40-202ENST00000374876 LIMD2Q9BT23 127 aa8.87□□□□□ -0.99
CCDC40-202ENST00000374876 TNXBP22105 4242 aa8.86□□□□□ -0.99
CCDC40-202ENST00000374876 LOC101927531A0A1B0GV80 90 aa8.86□□□□□ -0.99
CCDC40-202ENST00000374876 Q5W150 140 aa8.85□□□□□ -0.99
CCDC40-202ENST00000374876 HERC1Q15751 4861 aa8.84□□□□□ -0.99
CCDC40-202ENST00000374876 C4orf48Q5BLP8 95 aa8.83□□□□□ -1
CCDC40-202ENST00000374876 COA5Q86WW8 74 aa8.83□□□□□ -1
CCDC40-202ENST00000374876 V9GYY9 64 aa8.83□□□□□ -1
CCDC40-202ENST00000374876 KRTAP13-3Q3SY46 172 aa8.83□□□□□ -1
CCDC40-202ENST00000374876 TYMSOSQ8TAI1 123 aa8.82□□□□□ -1
CCDC40-202ENST00000374876 PRO0628Q9UI54 55 aa8.82□□□□□ -1
CCDC40-202ENST00000374876 BRK1Q8WUW1 75 aa8.81□□□□□ -1
CCDC40-202ENST00000374876 PSPHP1O15172 72 aa8.8□□□□□ -1
CCDC40-202ENST00000374876 Q8N9P0 234 aaPredicted RBP8.79□□□□□ -1
CCDC40-202ENST00000374876 SPINK1P00995 79 aa8.76□□□□□ -1.01
CCDC40-202ENST00000374876 A8MUN3 132 aa8.73□□□□□ -1.01
CCDC40-202ENST00000374876 KRTAP16-1A8MUX0 517 aa8.73□□□□□ -1.01
CCDC40-202ENST00000374876 RETNLBQ9BQ08 111 aa8.73□□□□□ -1.01
CCDC40-202ENST00000374876 HRES1P13985 223 aa8.71□□□□□ -1.01
CCDC40-202ENST00000374876 LINC00304Q8N9R0 145 aa8.7□□□□□ -1.02
CCDC40-202ENST00000374876 PRR15LQ9BU68 103 aa8.68□□□□□ -1.02
CCDC40-202ENST00000374876 Q5VV11 94 aa8.67□□□□□ -1.02
CCDC40-202ENST00000374876 IGKV2-30P06310 120 aa8.66□□□□□ -1.02
CCDC40-202ENST00000374876 SPAG11AQ6PDA7 123 aa8.66□□□□□ -1.02
CCDC40-202ENST00000374876 RPS29P62273 56 aaKnown RBP8.66□□□□□ -1.02
CCDC40-202ENST00000374876 ACYP2P14621 99 aa8.64□□□□□ -1.03
CCDC40-202ENST00000374876 CHKB-CPT1BH3BT56 60 aa8.62□□□□□ -1.03
CCDC40-202ENST00000374876 DMAC1Q96GE9 116 aa8.6□□□□□ -1.03
CCDC40-202ENST00000374876 LINC01558Q9Y6Z2 57 aa8.59□□□□□ -1.03
CCDC40-202ENST00000374876 IGKV2D-30A0A075B6S6 120 aa8.59□□□□□ -1.03
CCDC40-202ENST00000374876 Q75L30 129 aa8.58□□□□□ -1.04
CCDC40-202ENST00000374876 HMCN2Q8NDA2 5059 aa8.56□□□□□ -1.04
CCDC40-202ENST00000374876 A6NED7 52 aa8.51□□□□□ -1.05
CCDC40-202ENST00000374876 C7orf65Q6ZTY9 151 aa8.47□□□□□ -1.05
CCDC40-202ENST00000374876 C9orf92A6NGG3 77 aa8.46□□□□□ -1.05
CCDC40-202ENST00000374876 A8MU10 97 aa8.46□□□□□ -1.05
CCDC40-202ENST00000374876 LPAP08519 4548 aa8.45□□□□□ -1.06
CCDC40-202ENST00000374876 LRP2P98164 4655 aa8.42□□□□□ -1.06
CCDC40-202ENST00000374876 LCA10Q71F78 164 aa8.42□□□□□ -1.06
CCDC40-202ENST00000374876 C20orf166-AS1Q96NR2 134 aa8.41□□□□□ -1.06
CCDC40-202ENST00000374876 A8MUU9 505 aa8.41□□□□□ -1.06
CCDC40-202ENST00000374876 CDC42SE1Q9NRR8 79 aa8.39□□□□□ -1.07
CCDC40-202ENST00000374876 SPINK7P58062 85 aa8.38□□□□□ -1.07
CCDC40-202ENST00000374876 SPTSSBQ8NFR3 76 aa8.36□□□□□ -1.07
CCDC40-202ENST00000374876 A0A1B0GU69 56 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms