RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 A0A1B0GVX0 72 aa13.14□□□□□ -0.31
SDF4-202ENST00000360001 MT1HL1P0DM35 61 aa13.13□□□□□ -0.31
SDF4-202ENST00000360001 HCG22E2RYF7 251 aa13.11□□□□□ -0.31
SDF4-202ENST00000360001 IGHV6-1A0A0B4J1U7 121 aa13.1□□□□□ -0.31
SDF4-202ENST00000360001 ATOX1O00244 68 aa13.09□□□□□ -0.31
SDF4-202ENST00000360001 ABCA13Q86UQ4 5058 aa13.09□□□□□ -0.31
SDF4-202ENST00000360001 MMP24-AS1A0A0U1RRL7 71 aa13.08□□□□□ -0.32
SDF4-202ENST00000360001 OXTP01178 125 aa13.06□□□□□ -0.32
SDF4-202ENST00000360001 WFDC13Q8IUB5 93 aa13.06□□□□□ -0.32
SDF4-202ENST00000360001 C8orf17Q9NRJ1 99 aa13.06□□□□□ -0.32
SDF4-202ENST00000360001 KRTAP29-1A8MX34 341 aaPredicted RBP13.05□□□□□ -0.32
SDF4-202ENST00000360001 NOTCH2NLQ7Z3S9 236 aa13.05□□□□□ -0.32
SDF4-202ENST00000360001 ANAPC13Q9BS18 74 aa13.04□□□□□ -0.32
SDF4-202ENST00000360001 PCP4P48539 62 aa13.03□□□□□ -0.32
SDF4-202ENST00000360001 CASC2Q6XLA1 102 aa13.03□□□□□ -0.32
SDF4-202ENST00000360001 DMBT1Q9UGM3 2413 aaPredicted RBP13.01□□□□□ -0.33
SDF4-202ENST00000360001 hDV103S1A0JD37 113 aa12.99□□□□□ -0.33
SDF4-202ENST00000360001 RETNLBQ9BQ08 111 aa12.99□□□□□ -0.33
SDF4-202ENST00000360001 C8orf87E5RJ46 101 aa12.96□□□□□ -0.33
SDF4-202ENST00000360001 OCR1Q9BZK8 76 aa12.94□□□□□ -0.34
SDF4-202ENST00000360001 LINC00313P59037 77 aa12.93□□□□□ -0.34
SDF4-202ENST00000360001 SMIM20Q8N5G0 67 aa12.92□□□□□ -0.34
SDF4-202ENST00000360001 SERP2Q8N6R1 65 aa12.92□□□□□ -0.34
SDF4-202ENST00000360001 TRAV7A0A075B6U4 112 aa12.9□□□□□ -0.34
SDF4-202ENST00000360001 TMEM254Q8TBM7 123 aa12.9□□□□□ -0.34
SDF4-202ENST00000360001 MRPL34Q9BQ48 92 aaKnown RBP12.89□□□□□ -0.35
SDF4-202ENST00000360001 COX7CP15954 63 aa12.85□□□□□ -0.35
SDF4-202ENST00000360001 KRTAP16-1A8MUX0 517 aa12.85□□□□□ -0.35
SDF4-202ENST00000360001 FP248Q71RG6 208 aaPredicted RBP12.8□□□□□ -0.36
SDF4-202ENST00000360001 CCDC179H3BU77 68 aa12.8□□□□□ -0.36
SDF4-202ENST00000360001 UQCRQO14949 82 aa12.8□□□□□ -0.36
SDF4-202ENST00000360001 NDUFS5O43920 106 aa12.78□□□□□ -0.36
SDF4-202ENST00000360001 Q8N9P0 234 aaPredicted RBP12.76□□□□□ -0.37
SDF4-202ENST00000360001 C9orf92A6NGG3 77 aa12.76□□□□□ -0.37
SDF4-202ENST00000360001 J3QL48 77 aa12.74□□□□□ -0.37
SDF4-202ENST00000360001 TP53AIP1Q9HCN2 124 aa12.74□□□□□ -0.37
SDF4-202ENST00000360001 IGLV7-46A0A075B6I9 117 aa12.7□□□□□ -0.38
SDF4-202ENST00000360001 C20orf197Q8N268 126 aa12.69□□□□□ -0.38
SDF4-202ENST00000360001 PCLOQ9Y6V0 5065 aa12.68□□□□□ -0.38
SDF4-202ENST00000360001 C5orf47Q569G3 176 aa12.68□□□□□ -0.38
SDF4-202ENST00000360001 PRR4Q16378 134 aa12.65□□□□□ -0.38
SDF4-202ENST00000360001 TRAV22A0A0B4J277 110 aa12.64□□□□□ -0.39
SDF4-202ENST00000360001 H0Y9P7 68 aa12.63□□□□□ -0.39
SDF4-202ENST00000360001 KRTAP13-3Q3SY46 172 aa12.62□□□□□ -0.39
SDF4-202ENST00000360001 Q5W150 140 aa12.61□□□□□ -0.39
SDF4-202ENST00000360001 A0A0U1RQV1 116 aa12.61□□□□□ -0.39
SDF4-202ENST00000360001 C20orf166-AS1Q96NR2 134 aa12.61□□□□□ -0.39
SDF4-202ENST00000360001 SNURFQ9Y675 71 aa12.61□□□□□ -0.39
SDF4-202ENST00000360001 CYSTM1Q9H1C7 97 aa12.6□□□□□ -0.39
SDF4-202ENST00000360001 A8MUU9 505 aa12.6□□□□□ -0.39
SDF4-202ENST00000360001 MP68P56378 58 aa12.6□□□□□ -0.39
SDF4-202ENST00000360001 KLKP1Q107X0 134 aa12.6□□□□□ -0.39
SDF4-202ENST00000360001 LINC00208Q96KT6 92 aa12.55□□□□□ -0.4
SDF4-202ENST00000360001 ZCCHC13Q8WW36 166 aaKnown RBP12.54□□□□□ -0.4
SDF4-202ENST00000360001 H3BPC8 53 aa12.52□□□□□ -0.4
SDF4-202ENST00000360001 Q75L30 129 aa12.51□□□□□ -0.41
SDF4-202ENST00000360001 C1orf64Q8NEQ6 169 aa12.5□□□□□ -0.41
SDF4-202ENST00000360001 TPRXLQ17RH7 258 aa12.5□□□□□ -0.41
SDF4-202ENST00000360001 XP32Q5T750 250 aa12.5□□□□□ -0.41
SDF4-202ENST00000360001 H7BZZ5 65 aa12.43□□□□□ -0.42
SDF4-202ENST00000360001 LPAP08519 4548 aa12.42□□□□□ -0.42
SDF4-202ENST00000360001 NDUFC1O43677 76 aa12.41□□□□□ -0.42
SDF4-202ENST00000360001 RPL37P61927 97 aaKnown RBP12.41□□□□□ -0.42
SDF4-202ENST00000360001 LOC101927531A0A1B0GV80 90 aa12.39□□□□□ -0.43
SDF4-202ENST00000360001 HERC1Q15751 4861 aa12.36□□□□□ -0.43
SDF4-202ENST00000360001 IGKV2-30P06310 120 aa12.36□□□□□ -0.43
SDF4-202ENST00000360001 CYP4F30PQ9H0H9 118 aa12.35□□□□□ -0.43
SDF4-202ENST00000360001 LRP2P98164 4655 aa12.33□□□□□ -0.44
SDF4-202ENST00000360001 ATP11AUNQ6ZP68 121 aa12.31□□□□□ -0.44
SDF4-202ENST00000360001 IGKV2D-30A0A075B6S6 120 aa12.3□□□□□ -0.44
SDF4-202ENST00000360001 PCOTHQ58A44 107 aa12.3□□□□□ -0.44
SDF4-202ENST00000360001 TMEM258P61165 79 aa12.29□□□□□ -0.44
SDF4-202ENST00000360001 C7orf65Q6ZTY9 151 aa12.23□□□□□ -0.45
SDF4-202ENST00000360001 HMCN2Q8NDA2 5059 aa12.21□□□□□ -0.45
SDF4-202ENST00000360001 FAM236DA0A1B0GTK5 79 aa12.18□□□□□ -0.46
SDF4-202ENST00000360001 FAM236CP0DP71 79 aa12.18□□□□□ -0.46
SDF4-202ENST00000360001 SPINK7P58062 85 aa12.18□□□□□ -0.46
SDF4-202ENST00000360001 SPANXA2-OT1Q8N9U9 137 aa12.17□□□□□ -0.46
SDF4-202ENST00000360001 HRES1P13985 223 aa12.15□□□□□ -0.46
SDF4-202ENST00000360001 ATP5EP56381 51 aaPredicted RBP12.11□□□□□ -0.47
SDF4-202ENST00000360001 SEC61BP60468 96 aaKnown RBP12.05□□□□□ -0.48
SDF4-202ENST00000360001 MUC17Q685J3 4493 aa12.01□□□□□ -0.49
SDF4-202ENST00000360001 C4orf26Q17RF5 130 aa11.99□□□□□ -0.49
SDF4-202ENST00000360001 DMAC1Q96GE9 116 aa11.94□□□□□ -0.5
SDF4-202ENST00000360001 SERP1Q9Y6X1 66 aa11.9□□□□□ -0.5
SDF4-202ENST00000360001 KRTAP4-1Q9BYQ7 146 aa11.86□□□□□ -0.51
SDF4-202ENST00000360001 KRTAP3-1Q9BYR8 98 aa11.86□□□□□ -0.51
SDF4-202ENST00000360001 COX6B2Q6YFQ2 88 aa11.85□□□□□ -0.51
SDF4-202ENST00000360001 ACYP2P14621 99 aa11.84□□□□□ -0.51
SDF4-202ENST00000360001 RPS28P62857 69 aaKnown RBP11.84□□□□□ -0.51
SDF4-202ENST00000360001 A8MUN3 132 aa11.82□□□□□ -0.52
SDF4-202ENST00000360001 COA5Q86WW8 74 aa11.81□□□□□ -0.52
SDF4-202ENST00000360001 MPLKIPQ8TAP9 179 aa11.81□□□□□ -0.52
SDF4-202ENST00000360001 RBM12B-AS1Q9P1G2 102 aa11.69□□□□□ -0.54
SDF4-202ENST00000360001 MUC2Q02817 5179 aa11.69□□□□□ -0.54
SDF4-202ENST00000360001 UBR4Q5T4S7 5183 aa11.68□□□□□ -0.54
SDF4-202ENST00000360001 CHKB-CPT1BH3BT56 60 aa11.63□□□□□ -0.55
SDF4-202ENST00000360001 RNF213Q63HN8 5207 aa11.59□□□□□ -0.55
SDF4-202ENST00000360001 H1FX-AS1Q4G0G2 97 aa11.58□□□□□ -0.56
SDF4-202ENST00000360001 SMIM26A0A096LP01 95 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms