RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 TEP1Q99973 2627 aaKnown RBP3.28□□□□□ -1.88
UPF2-201ENST00000356352 FRYQ5TBA9 3013 aa3.28□□□□□ -1.88
UPF2-201ENST00000356352 UNC79Q9P2D8 2635 aa3.28□□□□□ -1.88
UPF2-201ENST00000356352 CFAP54Q96N23 3096 aa3.28□□□□□ -1.89
UPF2-201ENST00000356352 GCN1Q92616 2671 aaKnown RBP3.27□□□□□ -1.89
UPF2-201ENST00000356352 CHD6Q8TD26 2715 aa3.27□□□□□ -1.89
UPF2-201ENST00000356352 AKAP9Q99996 3911 aa3.26□□□□□ -1.89
UPF2-201ENST00000356352 COL6A5A8TX70 2615 aa3.26□□□□□ -1.89
UPF2-201ENST00000356352 FRYLO94915 3013 aa3.24□□□□□ -1.89
UPF2-201ENST00000356352 STAB2Q8WWQ8 2551 aa3.24□□□□□ -1.89
UPF2-201ENST00000356352 NSD1Q96L73 2696 aaPredicted RBP3.24□□□□□ -1.89
UPF2-201ENST00000356352 ASPMQ8IZT6 3477 aa3.23□□□□□ -1.89
UPF2-201ENST00000356352 DCHS1Q96JQ0 3298 aa3.22□□□□□ -1.89
UPF2-201ENST00000356352 AKAP13Q12802 2813 aa3.22□□□□□ -1.89
UPF2-201ENST00000356352 FREM2Q5SZK8 3169 aa3.22□□□□□ -1.89
UPF2-201ENST00000356352 KRTAP13-4Q3LI77 160 aa3.22□□□□□ -1.89
UPF2-201ENST00000356352 SETXQ7Z333 2677 aaKnown RBP3.21□□□□□ -1.9
UPF2-201ENST00000356352 BAHCC1Q9P281 2608 aa3.2□□□□□ -1.9
UPF2-201ENST00000356352 VPS13CQ709C8 3753 aa3.2□□□□□ -1.9
UPF2-201ENST00000356352 CFAP47Q6ZTR5 3102 aa3.19□□□□□ -1.9
UPF2-201ENST00000356352 SMG1Q96Q15 3661 aaKnown RBP3.19□□□□□ -1.9
UPF2-201ENST00000356352 ITPR2Q14571 2701 aa3.19□□□□□ -1.9
UPF2-201ENST00000356352 NOTCH1P46531 2555 aa3.18□□□□□ -1.9
UPF2-201ENST00000356352 MAP1AP78559 2803 aaPredicted RBP3.18□□□□□ -1.9
UPF2-201ENST00000356352 ZNF292O60281 2723 aa3.17□□□□□ -1.9
UPF2-201ENST00000356352 KRTAP12-2P59991 146 aa3.17□□□□□ -1.9
UPF2-201ENST00000356352 DMXL1Q9Y485 3027 aa3.17□□□□□ -1.9
UPF2-201ENST00000356352 IGSF10Q6WRI0 2623 aa3.16□□□□□ -1.9
UPF2-201ENST00000356352 CELSR3Q9NYQ7 3312 aa3.15□□□□□ -1.9
UPF2-201ENST00000356352 NBEAL2Q6ZNJ1 2754 aa3.15□□□□□ -1.91
UPF2-201ENST00000356352 NBPF19A0A087WUL8 3843 aa3.14□□□□□ -1.91
UPF2-201ENST00000356352 RELNP78509 3460 aa3.13□□□□□ -1.91
UPF2-201ENST00000356352 DNAH3Q8TD57 4116 aa3.13□□□□□ -1.91
UPF2-201ENST00000356352 LAMA5O15230 3695 aa3.12□□□□□ -1.91
UPF2-201ENST00000356352 KALRNO60229 2985 aa3.12□□□□□ -1.91
UPF2-201ENST00000356352 KRTAP12-1P59990 96 aa3.12□□□□□ -1.91
UPF2-201ENST00000356352 LOC400499M0QZD8 3231 aa3.12□□□□□ -1.91
UPF2-201ENST00000356352 CMYA5Q8N3K9 4069 aa3.12□□□□□ -1.91
UPF2-201ENST00000356352 ANK2Q01484 3957 aa3.11□□□□□ -1.91
UPF2-201ENST00000356352 ANK3Q12955 4377 aaKnown RBP3.1□□□□□ -1.91
UPF2-201ENST00000356352 KRTAP15-1Q3LI76 137 aa3.1□□□□□ -1.91
UPF2-201ENST00000356352 MGAQ8IWI9 3026 aa3.1□□□□□ -1.91
UPF2-201ENST00000356352 ATMQ13315 3056 aa3.09□□□□□ -1.92
UPF2-201ENST00000356352 UBR5O95071 2799 aaPredicted RBP3.08□□□□□ -1.92
UPF2-201ENST00000356352 ZNF469Q96JG9 3925 aaPredicted RBP3.05□□□□□ -1.92
UPF2-201ENST00000356352 APCP25054 2843 aa3.05□□□□□ -1.92
UPF2-201ENST00000356352 DMXL2Q8TDJ6 3036 aa3.04□□□□□ -1.92
UPF2-201ENST00000356352 ITPR1Q14643 2758 aa3.04□□□□□ -1.92
UPF2-201ENST00000356352 A0A0C4DFX4 3053 aa3.03□□□□□ -1.92
UPF2-201ENST00000356352 DCHS2Q6V1P9 2916 aa3.03□□□□□ -1.92
UPF2-201ENST00000356352 KRTAP3-1Q9BYR8 98 aa3.02□□□□□ -1.93
UPF2-201ENST00000356352 INE1O15225 51 aa3.02□□□□□ -1.93
UPF2-201ENST00000356352 HRNRQ86YZ3 2850 aaPredicted RBP3.01□□□□□ -1.93
UPF2-201ENST00000356352 NBEAQ8NFP9 2946 aa3□□□□□ -1.93
UPF2-201ENST00000356352 HIVEP1P15822 2718 aa3□□□□□ -1.93
UPF2-201ENST00000356352 UTP20O75691 2785 aaKnown RBP2.99□□□□□ -1.93
UPF2-201ENST00000356352 BOD1L1Q8NFC6 3051 aa2.98□□□□□ -1.93
UPF2-201ENST00000356352 DYNC2H1Q8NCM8 4307 aaKnown RBP2.98□□□□□ -1.93
UPF2-201ENST00000356352 CUBNO60494 3623 aa2.98□□□□□ -1.93
UPF2-201ENST00000356352 DSPP15924 2871 aaKnown RBP2.98□□□□□ -1.93
UPF2-201ENST00000356352 KRTAP10-6P60371 365 aaPredicted RBP2.97□□□□□ -1.93
UPF2-201ENST00000356352 ZZEF1O43149 2961 aa2.97□□□□□ -1.93
UPF2-201ENST00000356352 DNAH1Q9P2D7 4330 aa2.97□□□□□ -1.93
UPF2-201ENST00000356352 SVEP1Q4LDE5 3571 aa2.96□□□□□ -1.94
UPF2-201ENST00000356352 TENM4Q6N022 2769 aa2.96□□□□□ -1.94
UPF2-201ENST00000356352 NIPBLQ6KC79 2804 aaeCLIP2.95□□□□□ -1.943e-6■□□□□ 9.5
UPF2-201ENST00000356352 KRTAP10-12P60413 245 aa2.94□□□□□ -1.94
UPF2-201ENST00000356352 CELSR1Q9NYQ6 3014 aa2.91□□□□□ -1.94
UPF2-201ENST00000356352 LRBAP50851 2863 aa2.91□□□□□ -1.94
UPF2-201ENST00000356352 FBN2P35556 2912 aa2.91□□□□□ -1.94
UPF2-201ENST00000356352 KRTAP23-1A1A580 65 aa2.9□□□□□ -1.94
UPF2-201ENST00000356352 CSMD2Q7Z408 3487 aa2.9□□□□□ -1.95
UPF2-201ENST00000356352 PDZD2O15018 2839 aa2.9□□□□□ -1.95
UPF2-201ENST00000356352 CSMD1Q96PZ7 3565 aa2.89□□□□□ -1.95
UPF2-201ENST00000356352 TGP01266 2768 aa2.88□□□□□ -1.95
UPF2-201ENST00000356352 DNAH7Q8WXX0 4024 aa2.88□□□□□ -1.95
UPF2-201ENST00000356352 ASH1LQ9NR48 2969 aaKnown RBP2.87□□□□□ -1.95
UPF2-201ENST00000356352 MT1HL1P0DM35 61 aa2.87□□□□□ -1.95
UPF2-201ENST00000356352 DNAH6Q9C0G6 4158 aa2.87□□□□□ -1.95
UPF2-201ENST00000356352 CELSR2Q9HCU4 2923 aa2.86□□□□□ -1.95
UPF2-201ENST00000356352 PRKDCP78527 4128 aaKnown RBP2.86□□□□□ -1.95
UPF2-201ENST00000356352 FLNCQ14315 2725 aa2.85□□□□□ -1.95
UPF2-201ENST00000356352 CRCT1Q9UGL9 99 aa2.85□□□□□ -1.95
UPF2-201ENST00000356352 TENM2Q9NT68 2774 aa2.85□□□□□ -1.95
UPF2-201ENST00000356352 CRYBG3Q68DQ2 2970 aa2.85□□□□□ -1.95
UPF2-201ENST00000356352 KRTAP12-3P60328 96 aa2.84□□□□□ -1.95
UPF2-201ENST00000356352 KRTAP3-2Q9BYR7 98 aa2.84□□□□□ -1.95
UPF2-201ENST00000356352 KRTAP3-3Q9BYR6 98 aa2.83□□□□□ -1.96
UPF2-201ENST00000356352 TACC2O95359 2948 aa2.83□□□□□ -1.96
UPF2-201ENST00000356352 TENM1Q9UKZ4 2725 aa2.82□□□□□ -1.96
UPF2-201ENST00000356352 ADGRG4Q8IZF6 3080 aa2.82□□□□□ -1.96
UPF2-201ENST00000356352 LYSTQ99698 3801 aa2.81□□□□□ -1.96
UPF2-201ENST00000356352 TENM3Q9P273 2699 aa2.81□□□□□ -1.96
UPF2-201ENST00000356352 TRRAPQ9Y4A5 3859 aa2.81□□□□□ -1.96
UPF2-201ENST00000356352 COL12A1Q99715 3063 aa2.8□□□□□ -1.96
UPF2-201ENST00000356352 FRAS1Q86XX4 4008 aa2.79□□□□□ -1.96
UPF2-201ENST00000356352 LCE3AQ5TA76 89 aa2.77□□□□□ -1.97
UPF2-201ENST00000356352 CSMD3Q7Z407 3707 aa2.77□□□□□ -1.97
UPF2-201ENST00000356352 KRTAP10-4P60372 401 aaPredicted RBP2.75□□□□□ -1.97
UPF2-201ENST00000356352 ALMS1Q8TCU4 4167 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms