RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 A0A087X002 238 aa11.42□□□□□ -0.58
COL9A3-201ENST00000343916 ASB16-AS1Q495Z4 193 aa11.42□□□□□ -0.58
COL9A3-201ENST00000343916 NOTCH2NLQ7Z3S9 236 aa11.42□□□□□ -0.58
COL9A3-201ENST00000343916 SPINK6Q6UWN8 80 aa11.41□□□□□ -0.58
COL9A3-201ENST00000343916 H3BPC8 53 aa11.41□□□□□ -0.58
COL9A3-201ENST00000343916 CDK2AP2O75956 126 aa11.41□□□□□ -0.58
COL9A3-201ENST00000343916 KRTAP10-1P60331 282 aa11.41□□□□□ -0.58
COL9A3-201ENST00000343916 SPANXA2-OT1Q8N9U9 137 aa11.41□□□□□ -0.58
COL9A3-201ENST00000343916 NDUFS5O43920 106 aa11.37□□□□□ -0.59
COL9A3-201ENST00000343916 LRP1BQ9NZR2 4599 aa11.37□□□□□ -0.59
COL9A3-201ENST00000343916 PKD1P98161 4303 aa11.37□□□□□ -0.59
COL9A3-201ENST00000343916 FAT2Q9NYQ8 4349 aa11.37□□□□□ -0.59
COL9A3-201ENST00000343916 V9GYY9 64 aa11.36□□□□□ -0.59
COL9A3-201ENST00000343916 Q5VV11 94 aa11.35□□□□□ -0.59
COL9A3-201ENST00000343916 A8MU10 97 aa11.34□□□□□ -0.59
COL9A3-201ENST00000343916 Q6ZSA8 131 aa11.34□□□□□ -0.59
COL9A3-201ENST00000343916 Q8N9P0 234 aaPredicted RBP11.33□□□□□ -0.6
COL9A3-201ENST00000343916 PCOTHQ58A44 107 aa11.32□□□□□ -0.6
COL9A3-201ENST00000343916 TP53AIP1Q9HCN2 124 aa11.32□□□□□ -0.6
COL9A3-201ENST00000343916 MRPL34Q9BQ48 92 aaKnown RBP11.31□□□□□ -0.6
COL9A3-201ENST00000343916 SSBP3-AS1Q7Z2R9 100 aa11.29□□□□□ -0.6
COL9A3-201ENST00000343916 PRR15LQ9BU68 103 aa11.29□□□□□ -0.6
COL9A3-201ENST00000343916 COA5Q86WW8 74 aa11.28□□□□□ -0.6
COL9A3-201ENST00000343916 KRTAP13-2Q52LG2 175 aa11.28□□□□□ -0.6
COL9A3-201ENST00000343916 CHKB-CPT1BH3BT56 60 aa11.27□□□□□ -0.61
COL9A3-201ENST00000343916 CD164Q04900 197 aa11.27□□□□□ -0.61
COL9A3-201ENST00000343916 IGLV7-46A0A075B6I9 117 aa11.25□□□□□ -0.61
COL9A3-201ENST00000343916 LIMD2Q9BT23 127 aa11.25□□□□□ -0.61
COL9A3-201ENST00000343916 VPS13BQ7Z7G8 4022 aa11.24□□□□□ -0.61
COL9A3-201ENST00000343916 SACSQ9NZJ4 4579 aa11.21□□□□□ -0.61
COL9A3-201ENST00000343916 PMAIP1Q13794 54 aa11.21□□□□□ -0.61
COL9A3-201ENST00000343916 PKHD1P08F94 4074 aa11.18□□□□□ -0.62
COL9A3-201ENST00000343916 KRTAP1-4P0C5Y4 121 aa11.18□□□□□ -0.62
COL9A3-201ENST00000343916 Q5W150 140 aa11.17□□□□□ -0.62
COL9A3-201ENST00000343916 SPAG11AQ6PDA7 123 aa11.12□□□□□ -0.63
COL9A3-201ENST00000343916 A6NED7 52 aa11.11□□□□□ -0.63
COL9A3-201ENST00000343916 Q75L30 129 aa11.11□□□□□ -0.63
COL9A3-201ENST00000343916 SEC61GP60059 68 aa11.11□□□□□ -0.63
COL9A3-201ENST00000343916 LOC101927531A0A1B0GV80 90 aa11.1□□□□□ -0.63
COL9A3-201ENST00000343916 LCA10Q71F78 164 aa11.1□□□□□ -0.63
COL9A3-201ENST00000343916 LINC00313P59037 77 aa11.1□□□□□ -0.63
COL9A3-201ENST00000343916 SPTSSBQ8NFR3 76 aa11.1□□□□□ -0.63
COL9A3-201ENST00000343916 C8orf87E5RJ46 101 aa11.09□□□□□ -0.63
COL9A3-201ENST00000343916 PLA2G1BP04054 148 aaKnown RBP11.09□□□□□ -0.63
COL9A3-201ENST00000343916 KRTAP13-3Q3SY46 172 aa11.09□□□□□ -0.63
COL9A3-201ENST00000343916 HRES1P13985 223 aa11.06□□□□□ -0.64
COL9A3-201ENST00000343916 RETNLBQ9BQ08 111 aa11.05□□□□□ -0.64
COL9A3-201ENST00000343916 KMT2CQ8NEZ4 4911 aaKnown RBP11.02□□□□□ -0.65
COL9A3-201ENST00000343916 TYMSOSQ8TAI1 123 aa11.02□□□□□ -0.65
COL9A3-201ENST00000343916 LINC01558Q9Y6Z2 57 aa11.02□□□□□ -0.65
COL9A3-201ENST00000343916 SMR3BP02814 79 aaPredicted RBP10.99□□□□□ -0.65
COL9A3-201ENST00000343916 C4orf48Q5BLP8 95 aa10.98□□□□□ -0.65
COL9A3-201ENST00000343916 RYR2Q92736 4967 aa10.98□□□□□ -0.65
COL9A3-201ENST00000343916 KRTAP16-1A8MUX0 517 aa10.96□□□□□ -0.65
COL9A3-201ENST00000343916 ATP11AUNQ6ZP68 121 aa10.96□□□□□ -0.65
COL9A3-201ENST00000343916 PRR26Q8N8Z3 221 aa10.95□□□□□ -0.66
COL9A3-201ENST00000343916 CDC42SE1Q9NRR8 79 aa10.95□□□□□ -0.66
COL9A3-201ENST00000343916 SPINK7P58062 85 aa10.94□□□□□ -0.66
COL9A3-201ENST00000343916 FAM229AH3BQW9 127 aa10.93□□□□□ -0.66
COL9A3-201ENST00000343916 DYNC1H1Q14204 4646 aaKnown RBP10.92□□□□□ -0.66
COL9A3-201ENST00000343916 SPINK1P00995 79 aa10.92□□□□□ -0.66
COL9A3-201ENST00000343916 A0A1B0GVY2 172 aa10.9□□□□□ -0.67
COL9A3-201ENST00000343916 KTN1-AS1Q86SY8 53 aa10.9□□□□□ -0.67
COL9A3-201ENST00000343916 FAT1Q14517 4588 aa10.88□□□□□ -0.67
COL9A3-201ENST00000343916 A6NN06 94 aa10.87□□□□□ -0.67
COL9A3-201ENST00000343916 LINC00304Q8N9R0 145 aa10.85□□□□□ -0.67
COL9A3-201ENST00000343916 IGKV2-30P06310 120 aa10.84□□□□□ -0.67
COL9A3-201ENST00000343916 APOBP04114 4563 aaKnown RBP10.79□□□□□ -0.68
COL9A3-201ENST00000343916 IGKV2D-30A0A075B6S6 120 aa10.79□□□□□ -0.68
COL9A3-201ENST00000343916 ACYP2P14621 99 aa10.79□□□□□ -0.68
COL9A3-201ENST00000343916 DMAC1Q96GE9 116 aa10.77□□□□□ -0.69
COL9A3-201ENST00000343916 KRTAP10-4P60372 401 aaPredicted RBP10.77□□□□□ -0.69
COL9A3-201ENST00000343916 RYR3Q15413 4870 aa10.74□□□□□ -0.69
COL9A3-201ENST00000343916 RBM12B-AS1Q9P1G2 102 aa10.73□□□□□ -0.69
COL9A3-201ENST00000343916 RPS29P62273 56 aaKnown RBP10.73□□□□□ -0.69
COL9A3-201ENST00000343916 C7orf65Q6ZTY9 151 aa10.68□□□□□ -0.7
COL9A3-201ENST00000343916 C9orf92A6NGG3 77 aa10.66□□□□□ -0.7
COL9A3-201ENST00000343916 PKHD1L1Q86WI1 4243 aa10.64□□□□□ -0.71
COL9A3-201ENST00000343916 A0A1B0GU69 56 aa10.62□□□□□ -0.71
COL9A3-201ENST00000343916 Q8N1X5 172 aa10.53□□□□□ -0.72
COL9A3-201ENST00000343916 FLG2Q5D862 2391 aaPredicted RBP10.51□□□□□ -0.73
COL9A3-201ENST00000343916 C20orf166-AS1Q96NR2 134 aa10.5□□□□□ -0.73
COL9A3-201ENST00000343916 A8MUU9 505 aa10.5□□□□□ -0.73
COL9A3-201ENST00000343916 PRAC1Q96KF2 57 aa10.49□□□□□ -0.73
COL9A3-201ENST00000343916 LRP1Q07954 4544 aaKnown RBP10.49□□□□□ -0.73
COL9A3-201ENST00000343916 SPATA8Q6RVD6 105 aa10.46□□□□□ -0.73
COL9A3-201ENST00000343916 ADM2Q7Z4H4 148 aa10.46□□□□□ -0.73
COL9A3-201ENST00000343916 HSPG2P98160 4391 aa10.46□□□□□ -0.74
COL9A3-201ENST00000343916 MIR22HGQ0VDD5 57 aa10.44□□□□□ -0.74
COL9A3-201ENST00000343916 UQCR11O14957 56 aa10.42□□□□□ -0.74
COL9A3-201ENST00000343916 Q5VSD8 79 aa10.39□□□□□ -0.75
COL9A3-201ENST00000343916 KRTAP17-1Q9BYP8 105 aa10.38□□□□□ -0.75
COL9A3-201ENST00000343916 TNXBP22105 4242 aa10.37□□□□□ -0.75
COL9A3-201ENST00000343916 RYR1P21817 5038 aa10.35□□□□□ -0.75
COL9A3-201ENST00000343916 EPPK1P58107 5090 aaKnown RBP10.35□□□□□ -0.75
COL9A3-201ENST00000343916 DMBT1Q9UGM3 2413 aaPredicted RBP10.34□□□□□ -0.75
COL9A3-201ENST00000343916 FAT3Q8TDW7 4589 aa10.32□□□□□ -0.76
COL9A3-201ENST00000343916 KRTAP10-8P60410 259 aa10.32□□□□□ -0.76
COL9A3-201ENST00000343916 KRTAP3-1Q9BYR8 98 aa10.32□□□□□ -0.76
COL9A3-201ENST00000343916 KIAA1109Q2LD37 5005 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms