RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 XP32Q5T750 250 aa4.54□□□□□ -1.68
TDP1-201ENST00000335725 DOPEY1Q5JWR5 2465 aa4.54□□□□□ -1.68
TDP1-201ENST00000335725 CCDC168Q8NDH2 2452 aa4.54□□□□□ -1.68
TDP1-201ENST00000335725 EPG5Q9HCE0 2579 aa4.54□□□□□ -1.68
TDP1-201ENST00000335725 SRRM2Q9UQ35 2752 aaKnown RBP4.53□□□□□ -1.68
TDP1-201ENST00000335725 VPS13CQ709C8 3753 aa4.53□□□□□ -1.68
TDP1-201ENST00000335725 PRO2289Q9P1D8 64 aa4.52□□□□□ -1.69
TDP1-201ENST00000335725 MXRA5Q9NR99 2828 aa4.5□□□□□ -1.69
TDP1-201ENST00000335725 IGSF10Q6WRI0 2623 aa4.5□□□□□ -1.69
TDP1-201ENST00000335725 CUBNO60494 3623 aa4.5□□□□□ -1.69
TDP1-201ENST00000335725 BAHCC1Q9P281 2608 aa4.47□□□□□ -1.69
TDP1-201ENST00000335725 USP9YO00507 2555 aaPredicted RBP4.47□□□□□ -1.69
TDP1-201ENST00000335725 UBE2DNLQ8IWF7 75 aa4.47□□□□□ -1.69
TDP1-201ENST00000335725 SPACA4Q8TDM5 124 aa4.47□□□□□ -1.69
TDP1-201ENST00000335725 KRTAP3-2Q9BYR7 98 aa4.47□□□□□ -1.69
TDP1-201ENST00000335725 NIPBLQ6KC79 2804 aaeCLIP4.46□□□□□ -1.7
TDP1-201ENST00000335725 KRTAP10-3P60369 221 aa4.45□□□□□ -1.7
TDP1-201ENST00000335725 MYO18BQ8IUG5 2567 aa4.45□□□□□ -1.7
TDP1-201ENST00000335725 KRTAP3-1Q9BYR8 98 aa4.45□□□□□ -1.7
TDP1-201ENST00000335725 FBN2P35556 2912 aa4.45□□□□□ -1.7
TDP1-201ENST00000335725 FBN1P35555 2871 aaKnown RBP4.44□□□□□ -1.7
TDP1-201ENST00000335725 KRTAP13-4Q3LI77 160 aa4.44□□□□□ -1.7
TDP1-201ENST00000335725 HELZ2Q9BYK8 2649 aaKnown RBP4.44□□□□□ -1.7
TDP1-201ENST00000335725 CFAP46Q8IYW2 2715 aa4.44□□□□□ -1.7
TDP1-201ENST00000335725 KRTAP10-6P60371 365 aaPredicted RBP4.44□□□□□ -1.7
TDP1-201ENST00000335725 Q6ZRN7 208 aaPredicted RBP4.44□□□□□ -1.7
TDP1-201ENST00000335725 CENPEQ02224 2701 aa4.43□□□□□ -1.7
TDP1-201ENST00000335725 KRTAP10-9P60411 292 aa4.42□□□□□ -1.7
TDP1-201ENST00000335725 LRRK2Q5S007 2527 aa4.42□□□□□ -1.7
TDP1-201ENST00000335725 VWFP04275 2813 aa4.41□□□□□ -1.7
TDP1-201ENST00000335725 KRTAP12-2P59991 146 aa4.41□□□□□ -1.7
TDP1-201ENST00000335725 CSMD3Q7Z407 3707 aa4.4□□□□□ -1.71
TDP1-201ENST00000335725 SETD2Q9BYW2 2564 aaPredicted RBP4.39□□□□□ -1.71
TDP1-201ENST00000335725 MEGF8Q7Z7M0 2845 aa4.39□□□□□ -1.71
TDP1-201ENST00000335725 KRTAP1-3Q8IUG1 177 aa4.39□□□□□ -1.71
TDP1-201ENST00000335725 ZANQ9Y493 2812 aa4.38□□□□□ -1.71
TDP1-201ENST00000335725 KRTAP1-5Q9BYS1 174 aa4.38□□□□□ -1.71
TDP1-201ENST00000335725 HECTD1Q9ULT8 2610 aa4.37□□□□□ -1.71
TDP1-201ENST00000335725 KRTAP12-1P59990 96 aa4.36□□□□□ -1.71
TDP1-201ENST00000335725 DNAH1Q9P2D7 4330 aa4.36□□□□□ -1.71
TDP1-201ENST00000335725 R4GN34 69 aa4.35□□□□□ -1.71
TDP1-201ENST00000335725 FASNP49327 2511 aaKnown RBP4.34□□□□□ -1.71
TDP1-201ENST00000335725 ANK3Q12955 4377 aaKnown RBP4.34□□□□□ -1.72
TDP1-201ENST00000335725 ACANP16112 2415 aa4.33□□□□□ -1.72
TDP1-201ENST00000335725 DMBT1Q9UGM3 2413 aaPredicted RBP4.33□□□□□ -1.72
TDP1-201ENST00000335725 HIVEP1P15822 2718 aa4.33□□□□□ -1.72
TDP1-201ENST00000335725 INE1O15225 51 aa4.32□□□□□ -1.72
TDP1-201ENST00000335725 KRTAP1-1Q07627 177 aa4.31□□□□□ -1.72
TDP1-201ENST00000335725 FLNCQ14315 2725 aa4.3□□□□□ -1.72
TDP1-201ENST00000335725 ABCA12Q86UK0 2595 aa4.3□□□□□ -1.72
TDP1-201ENST00000335725 COL6A5A8TX70 2615 aa4.29□□□□□ -1.72
TDP1-201ENST00000335725 NBEAL1Q6ZS30 2694 aa4.29□□□□□ -1.72
TDP1-201ENST00000335725 PP632Q6XCG6 107 aa4.29□□□□□ -1.72
TDP1-201ENST00000335725 TGP01266 2768 aa4.29□□□□□ -1.72
TDP1-201ENST00000335725 TENM4Q6N022 2769 aa4.28□□□□□ -1.72
TDP1-201ENST00000335725 KRTAP13-2Q52LG2 175 aa4.28□□□□□ -1.72
TDP1-201ENST00000335725 M0QZ58 72 aa4.26□□□□□ -1.73
TDP1-201ENST00000335725 KRTAP23-1A1A580 65 aa4.26□□□□□ -1.73
TDP1-201ENST00000335725 PDZD2O15018 2839 aa4.25□□□□□ -1.73
TDP1-201ENST00000335725 PKD1L1Q8TDX9 2849 aa4.25□□□□□ -1.73
TDP1-201ENST00000335725 TRRAPQ9Y4A5 3859 aa4.25□□□□□ -1.73
TDP1-201ENST00000335725 KRTAP10-11P60412 298 aa4.24□□□□□ -1.73
TDP1-201ENST00000335725 FRAS1Q86XX4 4008 aa4.23□□□□□ -1.73
TDP1-201ENST00000335725 KRTAP10-8P60410 259 aa4.23□□□□□ -1.73
TDP1-201ENST00000335725 POLQO75417 2590 aa4.22□□□□□ -1.73
TDP1-201ENST00000335725 SMR3AQ99954 134 aa4.22□□□□□ -1.73
TDP1-201ENST00000335725 KRTAP3-3Q9BYR6 98 aa4.22□□□□□ -1.73
TDP1-201ENST00000335725 COL7A1Q02388 2944 aa4.22□□□□□ -1.73
TDP1-201ENST00000335725 NOTCH2Q04721 2471 aa4.21□□□□□ -1.73
TDP1-201ENST00000335725 ITPR3Q14573 2671 aa4.21□□□□□ -1.74
TDP1-201ENST00000335725 DNAH8Q96JB1 4490 aa4.2□□□□□ -1.74
TDP1-201ENST00000335725 RPS29P62273 56 aaKnown RBP4.2□□□□□ -1.74
TDP1-201ENST00000335725 FLNAP21333 2647 aaKnown RBP4.19□□□□□ -1.74
TDP1-201ENST00000335725 KRTAP21-3Q3LHN1 58 aa4.17□□□□□ -1.74
TDP1-201ENST00000335725 ATRQ13535 2644 aa4.17□□□□□ -1.74
TDP1-201ENST00000335725 STAB2Q8WWQ8 2551 aa4.17□□□□□ -1.74
TDP1-201ENST00000335725 FLNBO75369 2602 aaKnown RBP4.16□□□□□ -1.74
TDP1-201ENST00000335725 ITPR2Q14571 2701 aa4.15□□□□□ -1.74
TDP1-201ENST00000335725 DNAH10Q8IVF4 4471 aa4.15□□□□□ -1.75
TDP1-201ENST00000335725 VPS13DQ5THJ4 4388 aa4.14□□□□□ -1.75
TDP1-201ENST00000335725 C9orf92A6NGG3 77 aa4.13□□□□□ -1.75
TDP1-201ENST00000335725 DNAH17Q9UFH2 4485 aa4.12□□□□□ -1.75
TDP1-201ENST00000335725 SPRR5A0A1B0GTR4 108 aa4.12□□□□□ -1.75
TDP1-201ENST00000335725 ANK2Q01484 3957 aa4.12□□□□□ -1.75
TDP1-201ENST00000335725 TENM3Q9P273 2699 aa4.1□□□□□ -1.75
TDP1-201ENST00000335725 KRTAP1-4P0C5Y4 121 aa4.09□□□□□ -1.75
TDP1-201ENST00000335725 NSD1Q96L73 2696 aaPredicted RBP4.09□□□□□ -1.76
TDP1-201ENST00000335725 NOTCH1P46531 2555 aa4.07□□□□□ -1.76
TDP1-201ENST00000335725 TEP1Q99973 2627 aaKnown RBP4.06□□□□□ -1.76
TDP1-201ENST00000335725 LYSTQ99698 3801 aa4.06□□□□□ -1.76
TDP1-201ENST00000335725 CMYA5Q8N3K9 4069 aa4.04□□□□□ -1.76
TDP1-201ENST00000335725 DNAH9Q9NYC9 4486 aa4.02□□□□□ -1.77
TDP1-201ENST00000335725 MAST4O15021 2626 aa4.02□□□□□ -1.77
TDP1-201ENST00000335725 DNAH11Q96DT5 4516 aa3.97□□□□□ -1.77
TDP1-201ENST00000335725 DNAH3Q8TD57 4116 aa3.97□□□□□ -1.77
TDP1-201ENST00000335725 ZNF469Q96JG9 3925 aaPredicted RBP3.96□□□□□ -1.78
TDP1-201ENST00000335725 FBN3Q75N90 2809 aa3.96□□□□□ -1.78
TDP1-201ENST00000335725 Q5VSD8 79 aa3.94□□□□□ -1.78
TDP1-201ENST00000335725 DYNC2H1Q8NCM8 4307 aaKnown RBP3.92□□□□□ -1.78
TDP1-201ENST00000335725 TENM1Q9UKZ4 2725 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms