RNA–Protein interactions for RNA: ENST00000322344.7

PNKP-201, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PNKP, Length 2,041 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-201ENST00000322344 ALMS1Q8TCU4 4167 aa13.1□□□□□ -0.31
PNKP-201ENST00000322344 IGLV7-46A0A075B6I9 117 aa13.1□□□□□ -0.31
PNKP-201ENST00000322344 SPINK6Q6UWN8 80 aa13.1□□□□□ -0.31
PNKP-201ENST00000322344 TGP01266 2768 aa13.09□□□□□ -0.31
PNKP-201ENST00000322344 A0A087X002 238 aa13.09□□□□□ -0.31
PNKP-201ENST00000322344 NOTCH2NLQ7Z3S9 236 aa13.09□□□□□ -0.31
PNKP-201ENST00000322344 DNAH5Q8TE73 4624 aa13.08□□□□□ -0.32
PNKP-201ENST00000322344 KRTAP10-1P60331 282 aa13.08□□□□□ -0.32
PNKP-201ENST00000322344 PRO0628Q9UI54 55 aa13.08□□□□□ -0.32
PNKP-201ENST00000322344 DNAH11Q96DT5 4516 aa13.07□□□□□ -0.32
PNKP-201ENST00000322344 C8orf87E5RJ46 101 aa13.06□□□□□ -0.32
PNKP-201ENST00000322344 V9GYY9 64 aa13.05□□□□□ -0.32
PNKP-201ENST00000322344 PCOTHQ58A44 107 aa13.02□□□□□ -0.33
PNKP-201ENST00000322344 KRTAP13-2Q52LG2 175 aa12.99□□□□□ -0.33
PNKP-201ENST00000322344 LOC101927531A0A1B0GV80 90 aa12.97□□□□□ -0.33
PNKP-201ENST00000322344 C1orf195Q5TG92 126 aa12.96□□□□□ -0.34
PNKP-201ENST00000322344 BRK1Q8WUW1 75 aa12.96□□□□□ -0.34
PNKP-201ENST00000322344 COA5Q86WW8 74 aa12.95□□□□□ -0.34
PNKP-201ENST00000322344 KRTAP13-3Q3SY46 172 aa12.92□□□□□ -0.34
PNKP-201ENST00000322344 LINC00313P59037 77 aa12.9□□□□□ -0.34
PNKP-201ENST00000322344 PKD1P98161 4303 aa12.9□□□□□ -0.34
PNKP-201ENST00000322344 KRTAP1-4P0C5Y4 121 aa12.89□□□□□ -0.35
PNKP-201ENST00000322344 Q5W150 140 aa12.89□□□□□ -0.35
PNKP-201ENST00000322344 LIMD2Q9BT23 127 aa12.89□□□□□ -0.35
PNKP-201ENST00000322344 Q8N9P0 234 aaPredicted RBP12.88□□□□□ -0.35
PNKP-201ENST00000322344 PSPHP1O15172 72 aa12.88□□□□□ -0.35
PNKP-201ENST00000322344 FAT2Q9NYQ8 4349 aa12.87□□□□□ -0.35
PNKP-201ENST00000322344 LRP1BQ9NZR2 4599 aa12.83□□□□□ -0.35
PNKP-201ENST00000322344 A8MUN3 132 aa12.82□□□□□ -0.36
PNKP-201ENST00000322344 FAM229AH3BQW9 127 aa12.81□□□□□ -0.36
PNKP-201ENST00000322344 HYDINQ4G0P3 5121 aa12.8□□□□□ -0.36
PNKP-201ENST00000322344 C4orf48Q5BLP8 95 aa12.78□□□□□ -0.36
PNKP-201ENST00000322344 PLA2G1BP04054 148 aaKnown RBP12.77□□□□□ -0.37
PNKP-201ENST00000322344 HRES1P13985 223 aa12.76□□□□□ -0.37
PNKP-201ENST00000322344 Q5VV11 94 aa12.76□□□□□ -0.37
PNKP-201ENST00000322344 TYMSOSQ8TAI1 123 aa12.74□□□□□ -0.37
PNKP-201ENST00000322344 KRTAP16-1A8MUX0 517 aa12.72□□□□□ -0.37
PNKP-201ENST00000322344 SPINK1P00995 79 aa12.72□□□□□ -0.37
PNKP-201ENST00000322344 PRR15LQ9BU68 103 aa12.72□□□□□ -0.37
PNKP-201ENST00000322344 LINC01558Q9Y6Z2 57 aa12.67□□□□□ -0.38
PNKP-201ENST00000322344 IGKV2-30P06310 120 aa12.66□□□□□ -0.38
PNKP-201ENST00000322344 Q75L30 129 aa12.65□□□□□ -0.38
PNKP-201ENST00000322344 CHKB-CPT1BH3BT56 60 aa12.64□□□□□ -0.39
PNKP-201ENST00000322344 ACYP2P14621 99 aa12.64□□□□□ -0.39
PNKP-201ENST00000322344 VPS13BQ7Z7G8 4022 aa12.64□□□□□ -0.39
PNKP-201ENST00000322344 RPS29P62273 56 aaKnown RBP12.63□□□□□ -0.39
PNKP-201ENST00000322344 SPAG11AQ6PDA7 123 aa12.61□□□□□ -0.39
PNKP-201ENST00000322344 RETNLBQ9BQ08 111 aa12.61□□□□□ -0.39
PNKP-201ENST00000322344 DMAC1Q96GE9 116 aa12.61□□□□□ -0.39
PNKP-201ENST00000322344 LINC00304Q8N9R0 145 aa12.58□□□□□ -0.4
PNKP-201ENST00000322344 PRR26Q8N8Z3 221 aa12.55□□□□□ -0.4
PNKP-201ENST00000322344 SACSQ9NZJ4 4579 aa12.53□□□□□ -0.4
PNKP-201ENST00000322344 A0A1B0GVY2 172 aa12.5□□□□□ -0.41
PNKP-201ENST00000322344 A6NED7 52 aa12.49□□□□□ -0.41
PNKP-201ENST00000322344 SMR3BP02814 79 aaPredicted RBP12.46□□□□□ -0.41
PNKP-201ENST00000322344 IGKV2D-30A0A075B6S6 120 aa12.45□□□□□ -0.42
PNKP-201ENST00000322344 DYNC1H1Q14204 4646 aaKnown RBP12.42□□□□□ -0.42
PNKP-201ENST00000322344 PKHD1P08F94 4074 aa12.41□□□□□ -0.42
PNKP-201ENST00000322344 A8MU10 97 aa12.38□□□□□ -0.43
PNKP-201ENST00000322344 KRTAP10-4P60372 401 aaPredicted RBP12.38□□□□□ -0.43
PNKP-201ENST00000322344 LCA10Q71F78 164 aa12.38□□□□□ -0.43
PNKP-201ENST00000322344 CDC42SE1Q9NRR8 79 aa12.38□□□□□ -0.43
PNKP-201ENST00000322344 C7orf65Q6ZTY9 151 aa12.34□□□□□ -0.43
PNKP-201ENST00000322344 ATP11AUNQ6ZP68 121 aa12.33□□□□□ -0.44
PNKP-201ENST00000322344 SPINK7P58062 85 aa12.29□□□□□ -0.44
PNKP-201ENST00000322344 APOBP04114 4563 aaKnown RBP12.28□□□□□ -0.44
PNKP-201ENST00000322344 PMAIP1Q13794 54 aa12.26□□□□□ -0.45
PNKP-201ENST00000322344 C20orf166-AS1Q96NR2 134 aa12.25□□□□□ -0.45
PNKP-201ENST00000322344 PKHD1L1Q86WI1 4243 aa12.25□□□□□ -0.45
PNKP-201ENST00000322344 A8MUU9 505 aa12.25□□□□□ -0.45
PNKP-201ENST00000322344 SPTSSBQ8NFR3 76 aa12.24□□□□□ -0.45
PNKP-201ENST00000322344 A0A1B0GU69 56 aa12.22□□□□□ -0.45
PNKP-201ENST00000322344 C9orf92A6NGG3 77 aa12.19□□□□□ -0.46
PNKP-201ENST00000322344 RYR2Q92736 4967 aa12.16□□□□□ -0.46
PNKP-201ENST00000322344 FAT1Q14517 4588 aa12.16□□□□□ -0.46
PNKP-201ENST00000322344 Q8N1X5 172 aa12.11□□□□□ -0.47
PNKP-201ENST00000322344 A6NN06 94 aa12.08□□□□□ -0.48
PNKP-201ENST00000322344 UQCR11O14957 56 aa12□□□□□ -0.49
PNKP-201ENST00000322344 SPATA8Q6RVD6 105 aa12□□□□□ -0.49
PNKP-201ENST00000322344 KTN1-AS1Q86SY8 53 aa12□□□□□ -0.49
PNKP-201ENST00000322344 KRTAP10-8P60410 259 aa11.95□□□□□ -0.5
PNKP-201ENST00000322344 MIR22HGQ0VDD5 57 aa11.94□□□□□ -0.5
PNKP-201ENST00000322344 SEC61GP60059 68 aa11.93□□□□□ -0.5
PNKP-201ENST00000322344 Q5VSD8 79 aa11.91□□□□□ -0.5
PNKP-201ENST00000322344 KRTAP3-1Q9BYR8 98 aa11.89□□□□□ -0.51
PNKP-201ENST00000322344 FLG2Q5D862 2391 aaPredicted RBP11.88□□□□□ -0.51
PNKP-201ENST00000322344 KMT2CQ8NEZ4 4911 aaKnown RBP11.88□□□□□ -0.51
PNKP-201ENST00000322344 COX6B2Q6YFQ2 88 aa11.82□□□□□ -0.52
PNKP-201ENST00000322344 FAT3Q8TDW7 4589 aa11.81□□□□□ -0.52
PNKP-201ENST00000322344 TNXBP22105 4242 aa11.79□□□□□ -0.52
PNKP-201ENST00000322344 HSPG2P98160 4391 aa11.74□□□□□ -0.53
PNKP-201ENST00000322344 RPL37P61927 97 aaKnown RBP11.74□□□□□ -0.53
PNKP-201ENST00000322344 LRP1Q07954 4544 aaKnown RBP11.68□□□□□ -0.54
PNKP-201ENST00000322344 XP32Q5T750 250 aa11.65□□□□□ -0.54
PNKP-201ENST00000322344 RYR1P21817 5038 aa11.65□□□□□ -0.54
PNKP-201ENST00000322344 A0A1B0GU33 70 aa11.6□□□□□ -0.55
PNKP-201ENST00000322344 H1FX-AS1Q4G0G2 97 aa11.58□□□□□ -0.56
PNKP-201ENST00000322344 RBM12B-AS1Q9P1G2 102 aa11.58□□□□□ -0.56
PNKP-201ENST00000322344 H0YAA0 97 aa11.56□□□□□ -0.56
PNKP-201ENST00000322344 MT1HL1P0DM35 61 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms