RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 CRYBG3Q68DQ2 2970 aa9.49□□□□□ -0.89
USP42-201ENST00000306177 CAMK2N1Q7Z7J9 78 aa9.48□□□□□ -0.89
USP42-201ENST00000306177 HIVEP1P15822 2718 aa9.47□□□□□ -0.89
USP42-201ENST00000306177 Q6ZR54 194 aa9.47□□□□□ -0.89
USP42-201ENST00000306177 DMAC1Q96GE9 116 aa9.46□□□□□ -0.89
USP42-201ENST00000306177 M0R2T5 61 aa9.45□□□□□ -0.9
USP42-201ENST00000306177 Q5VV11 94 aa9.41□□□□□ -0.9
USP42-201ENST00000306177 CELSR1Q9NYQ6 3014 aa9.4□□□□□ -0.9
USP42-201ENST00000306177 DCHS2Q6V1P9 2916 aa9.4□□□□□ -0.9
USP42-201ENST00000306177 SEC61BP60468 96 aaKnown RBP9.4□□□□□ -0.9
USP42-201ENST00000306177 PRAC1Q96KF2 57 aa9.38□□□□□ -0.91
USP42-201ENST00000306177 APCP25054 2843 aa9.38□□□□□ -0.91
USP42-201ENST00000306177 KRTAP29-1A8MX34 341 aaPredicted RBP9.35□□□□□ -0.91
USP42-201ENST00000306177 KMT2BQ9UMN6 2715 aaPredicted RBP9.34□□□□□ -0.91
USP42-201ENST00000306177 NIPBLQ6KC79 2804 aaeCLIP9.34□□□□□ -0.91
USP42-201ENST00000306177 ZANQ9Y493 2812 aa9.34□□□□□ -0.91
USP42-201ENST00000306177 A0A087X002 238 aa9.32□□□□□ -0.92
USP42-201ENST00000306177 Q6ZRN7 208 aaPredicted RBP9.31□□□□□ -0.92
USP42-201ENST00000306177 R4GN34 69 aa9.31□□□□□ -0.92
USP42-201ENST00000306177 KRTAP11-1Q8IUC1 163 aa9.27□□□□□ -0.93
USP42-201ENST00000306177 CELSR2Q9HCU4 2923 aa9.26□□□□□ -0.93
USP42-201ENST00000306177 DMBT1Q9UGM3 2413 aaPredicted RBP9.26□□□□□ -0.93
USP42-201ENST00000306177 TENM4Q6N022 2769 aa9.25□□□□□ -0.93
USP42-201ENST00000306177 KRTAP7-1Q8IUC3 87 aa9.24□□□□□ -0.93
USP42-201ENST00000306177 CSMD2Q7Z408 3487 aa9.24□□□□□ -0.93
USP42-201ENST00000306177 ASB16-AS1Q495Z4 193 aa9.22□□□□□ -0.93
USP42-201ENST00000306177 RPL37P61927 97 aaKnown RBP9.21□□□□□ -0.94
USP42-201ENST00000306177 H1FX-AS1Q4G0G2 97 aa9.19□□□□□ -0.94
USP42-201ENST00000306177 NOTCH2NLQ7Z3S9 236 aa9.19□□□□□ -0.94
USP42-201ENST00000306177 HRNRQ86YZ3 2850 aaPredicted RBP9.18□□□□□ -0.94
USP42-201ENST00000306177 NF1P21359 2839 aa9.17□□□□□ -0.94
USP42-201ENST00000306177 RPS29P62273 56 aaKnown RBP9.17□□□□□ -0.94
USP42-201ENST00000306177 FBN2P35556 2912 aa9.16□□□□□ -0.94
USP42-201ENST00000306177 M0QZ58 72 aa9.13□□□□□ -0.95
USP42-201ENST00000306177 KRTAP13-1Q8IUC0 172 aa9.11□□□□□ -0.95
USP42-201ENST00000306177 ROMO1P60602 79 aa9.11□□□□□ -0.95
USP42-201ENST00000306177 ADM2Q7Z4H4 148 aa9.07□□□□□ -0.96
USP42-201ENST00000306177 KRTAP13-2Q52LG2 175 aa9.06□□□□□ -0.96
USP42-201ENST00000306177 SPATA8Q6RVD6 105 aa9.04□□□□□ -0.96
USP42-201ENST00000306177 KRTAP21-3Q3LHN1 58 aa9.04□□□□□ -0.96
USP42-201ENST00000306177 BSNQ9UPA5 3926 aa9□□□□□ -0.97
USP42-201ENST00000306177 VPS13CQ709C8 3753 aa9□□□□□ -0.97
USP42-201ENST00000306177 KRTAP16-1A8MUX0 517 aa8.99□□□□□ -0.97
USP42-201ENST00000306177 ZFHX3Q15911 3703 aa8.93□□□□□ -0.98
USP42-201ENST00000306177 MXRA5Q9NR99 2828 aa8.92□□□□□ -0.98
USP42-201ENST00000306177 PLAC4Q8WY50 150 aa8.92□□□□□ -0.98
USP42-201ENST00000306177 A6NN06 94 aa8.91□□□□□ -0.98
USP42-201ENST00000306177 A8MUU9 505 aa8.82□□□□□ -1
USP42-201ENST00000306177 NBPF19A0A087WUL8 3843 aa8.79□□□□□ -1
USP42-201ENST00000306177 A8MU10 97 aa8.79□□□□□ -1
USP42-201ENST00000306177 C20orf166-AS1Q96NR2 134 aa8.74□□□□□ -1.01
USP42-201ENST00000306177 TENM3Q9P273 2699 aa8.73□□□□□ -1.01
USP42-201ENST00000306177 TENM1Q9UKZ4 2725 aa8.71□□□□□ -1.02
USP42-201ENST00000306177 KRTAP25-1Q3LHN0 102 aa8.67□□□□□ -1.02
USP42-201ENST00000306177 KRTAP1-4P0C5Y4 121 aa8.67□□□□□ -1.02
USP42-201ENST00000306177 NDUFAF8A1L188 74 aa8.66□□□□□ -1.02
USP42-201ENST00000306177 TENM2Q9NT68 2774 aa8.6□□□□□ -1.03
USP42-201ENST00000306177 PDZD2O15018 2839 aa8.57□□□□□ -1.04
USP42-201ENST00000306177 FBN1P35555 2871 aaKnown RBP8.54□□□□□ -1.04
USP42-201ENST00000306177 XP32Q5T750 250 aa8.54□□□□□ -1.04
USP42-201ENST00000306177 VWFP04275 2813 aa8.53□□□□□ -1.04
USP42-201ENST00000306177 PKD1L1Q8TDX9 2849 aa8.5□□□□□ -1.05
USP42-201ENST00000306177 TNP1P09430 55 aa8.46□□□□□ -1.05
USP42-201ENST00000306177 OTOGQ6ZRI0 2925 aa8.45□□□□□ -1.06
USP42-201ENST00000306177 ZNF469Q96JG9 3925 aaPredicted RBP8.42□□□□□ -1.06
USP42-201ENST00000306177 TPRXLQ17RH7 258 aa8.39□□□□□ -1.07
USP42-201ENST00000306177 TGP01266 2768 aa8.37□□□□□ -1.07
USP42-201ENST00000306177 C10orf95Q9H7T3 257 aa8.33□□□□□ -1.08
USP42-201ENST00000306177 TRRAPQ9Y4A5 3859 aa8.31□□□□□ -1.08
USP42-201ENST00000306177 KRTAP13-3Q3SY46 172 aa8.28□□□□□ -1.08
USP42-201ENST00000306177 H0YAA0 97 aa8.27□□□□□ -1.09
USP42-201ENST00000306177 A0A1B0GVY2 172 aa8.26□□□□□ -1.09
USP42-201ENST00000306177 PP632Q6XCG6 107 aa8.25□□□□□ -1.09
USP42-201ENST00000306177 KRTAP10-8P60410 259 aa8.21□□□□□ -1.09
USP42-201ENST00000306177 AKAP9Q99996 3911 aa8.14□□□□□ -1.11
USP42-201ENST00000306177 P0C880 135 aa8.11□□□□□ -1.11
USP42-201ENST00000306177 KRTAP10-10P60014 251 aa8.09□□□□□ -1.11
USP42-201ENST00000306177 CSMD3Q7Z407 3707 aa8.04□□□□□ -1.12
USP42-201ENST00000306177 ANK3Q12955 4377 aaKnown RBP7.99□□□□□ -1.13
USP42-201ENST00000306177 SRRM2Q9UQ35 2752 aaKnown RBP7.98□□□□□ -1.13
USP42-201ENST00000306177 PRO2289Q9P1D8 64 aa7.97□□□□□ -1.13
USP42-201ENST00000306177 FBN3Q75N90 2809 aa7.92□□□□□ -1.14
USP42-201ENST00000306177 KRTAP12-2P59991 146 aa7.79□□□□□ -1.16
USP42-201ENST00000306177 MEGF8Q7Z7M0 2845 aa7.78□□□□□ -1.16
USP42-201ENST00000306177 COL7A1Q02388 2944 aa7.74□□□□□ -1.17
USP42-201ENST00000306177 KRTAP3-1Q9BYR8 98 aa7.74□□□□□ -1.17
USP42-201ENST00000306177 KRTAP12-1P59990 96 aa7.67□□□□□ -1.18
USP42-201ENST00000306177 KRTAP13-4Q3LI77 160 aa7.66□□□□□ -1.18
USP42-201ENST00000306177 MT1HL1P0DM35 61 aa7.56□□□□□ -1.2
USP42-201ENST00000306177 KRTAP10-6P60371 365 aaPredicted RBP7.5□□□□□ -1.21
USP42-201ENST00000306177 HUWE1Q7Z6Z7 4374 aaKnown RBP7.48□□□□□ -1.21
USP42-201ENST00000306177 KRTAP10-4P60372 401 aaPredicted RBP7.45□□□□□ -1.22
USP42-201ENST00000306177 ANK2Q01484 3957 aa7.39□□□□□ -1.23
USP42-201ENST00000306177 KRTAP4-5Q9BYR2 181 aa7.34□□□□□ -1.23
USP42-201ENST00000306177 LYSTQ99698 3801 aa7.28□□□□□ -1.24
USP42-201ENST00000306177 KRTAP15-1Q3LI76 137 aa7.27□□□□□ -1.25
USP42-201ENST00000306177 KRTAP3-3Q9BYR6 98 aa7.26□□□□□ -1.25
USP42-201ENST00000306177 DNAH10Q8IVF4 4471 aa7.26□□□□□ -1.25
USP42-201ENST00000306177 KRTAP3-2Q9BYR7 98 aa7.25□□□□□ -1.25
USP42-201ENST00000306177 ALMS1Q8TCU4 4167 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms