RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 M0QZ58 72 aa3.89□□□□□ -1.79
VPS35-201ENST00000299138 K7EIL1 84 aa3.88□□□□□ -1.79
VPS35-201ENST00000299138 LRBAP50851 2863 aa3.88□□□□□ -1.79
VPS35-201ENST00000299138 KMT2BQ9UMN6 2715 aaPredicted RBP3.87□□□□□ -1.79
VPS35-201ENST00000299138 Q5W150 140 aa3.87□□□□□ -1.79
VPS35-201ENST00000299138 CELSR1Q9NYQ6 3014 aa3.86□□□□□ -1.79
VPS35-201ENST00000299138 KRTAP13-1Q8IUC0 172 aa3.86□□□□□ -1.79
VPS35-201ENST00000299138 ZNF469Q96JG9 3925 aaPredicted RBP3.86□□□□□ -1.79
VPS35-201ENST00000299138 C10orf95Q9H7T3 257 aa3.85□□□□□ -1.79
VPS35-201ENST00000299138 MAP1AP78559 2803 aaPredicted RBP3.84□□□□□ -1.8
VPS35-201ENST00000299138 TEX15Q9BXT5 2789 aa3.84□□□□□ -1.8
VPS35-201ENST00000299138 CASC10Q5T4H9 136 aa3.83□□□□□ -1.8
VPS35-201ENST00000299138 UTP20O75691 2785 aaKnown RBP3.83□□□□□ -1.8
VPS35-201ENST00000299138 CELSR2Q9HCU4 2923 aa3.83□□□□□ -1.8
VPS35-201ENST00000299138 APCP25054 2843 aa3.83□□□□□ -1.8
VPS35-201ENST00000299138 ATRQ13535 2644 aa3.83□□□□□ -1.8
VPS35-201ENST00000299138 KRTAP7-1Q8IUC3 87 aa3.82□□□□□ -1.8
VPS35-201ENST00000299138 WWC2-AS2Q96NR7 200 aa3.82□□□□□ -1.8
VPS35-201ENST00000299138 A0A087WTM6 91 aa3.82□□□□□ -1.8
VPS35-201ENST00000299138 A8MU10 97 aa3.82□□□□□ -1.8
VPS35-201ENST00000299138 CUBNO60494 3623 aa3.8□□□□□ -1.8
VPS35-201ENST00000299138 RPS29P62273 56 aaKnown RBP3.8□□□□□ -1.8
VPS35-201ENST00000299138 GCN1Q92616 2671 aaKnown RBP3.79□□□□□ -1.8
VPS35-201ENST00000299138 ASH1LQ9NR48 2969 aaKnown RBP3.79□□□□□ -1.8
VPS35-201ENST00000299138 SETXQ7Z333 2677 aaKnown RBP3.79□□□□□ -1.8
VPS35-201ENST00000299138 TENM4Q6N022 2769 aa3.79□□□□□ -1.8
VPS35-201ENST00000299138 FBN2P35556 2912 aa3.78□□□□□ -1.8
VPS35-201ENST00000299138 ITPR2Q14571 2701 aa3.78□□□□□ -1.81
VPS35-201ENST00000299138 STAB1Q9NY15 2570 aa3.77□□□□□ -1.81
VPS35-201ENST00000299138 A8MUU9 505 aa3.77□□□□□ -1.81
VPS35-201ENST00000299138 TACC2O95359 2948 aa3.76□□□□□ -1.81
VPS35-201ENST00000299138 ZANQ9Y493 2812 aa3.76□□□□□ -1.81
VPS35-201ENST00000299138 DCHS2Q6V1P9 2916 aa3.75□□□□□ -1.81
VPS35-201ENST00000299138 PANO1I0J062 215 aa3.74□□□□□ -1.81
VPS35-201ENST00000299138 HIVEP1P15822 2718 aa3.74□□□□□ -1.81
VPS35-201ENST00000299138 NSD1Q96L73 2696 aaPredicted RBP3.73□□□□□ -1.81
VPS35-201ENST00000299138 TEP1Q99973 2627 aaKnown RBP3.73□□□□□ -1.81
VPS35-201ENST00000299138 KRTAP13-3Q3SY46 172 aa3.72□□□□□ -1.81
VPS35-201ENST00000299138 BAHCC1Q9P281 2608 aa3.72□□□□□ -1.81
VPS35-201ENST00000299138 AKAP9Q99996 3911 aa3.72□□□□□ -1.81
VPS35-201ENST00000299138 Q6ZRN7 208 aaPredicted RBP3.71□□□□□ -1.82
VPS35-201ENST00000299138 COL6A5A8TX70 2615 aa3.7□□□□□ -1.82
VPS35-201ENST00000299138 PDZD2O15018 2839 aa3.7□□□□□ -1.82
VPS35-201ENST00000299138 MGAM2Q2M2H8 2515 aa3.69□□□□□ -1.82
VPS35-201ENST00000299138 KRTAP1-5Q9BYS1 174 aa3.69□□□□□ -1.82
VPS35-201ENST00000299138 NIPBLQ6KC79 2804 aaeCLIP3.68□□□□□ -1.82
VPS35-201ENST00000299138 KRTAP11-1Q8IUC1 163 aa3.66□□□□□ -1.82
VPS35-201ENST00000299138 NOTCH2NLQ7Z3S9 236 aa3.66□□□□□ -1.82
VPS35-201ENST00000299138 MXRA5Q9NR99 2828 aa3.66□□□□□ -1.82
VPS35-201ENST00000299138 NOTCH1P46531 2555 aa3.64□□□□□ -1.83
VPS35-201ENST00000299138 Q5VSD8 79 aa3.64□□□□□ -1.83
VPS35-201ENST00000299138 NBEAL2Q6ZNJ1 2754 aa3.64□□□□□ -1.83
VPS35-201ENST00000299138 ANK3Q12955 4377 aaKnown RBP3.64□□□□□ -1.83
VPS35-201ENST00000299138 PP632Q6XCG6 107 aa3.63□□□□□ -1.83
VPS35-201ENST00000299138 TNP1P09430 55 aa3.63□□□□□ -1.83
VPS35-201ENST00000299138 KRTAP23-1A1A580 65 aa3.62□□□□□ -1.83
VPS35-201ENST00000299138 DMBT1Q9UGM3 2413 aaPredicted RBP3.61□□□□□ -1.83
VPS35-201ENST00000299138 NF1P21359 2839 aa3.61□□□□□ -1.83
VPS35-201ENST00000299138 OTOGQ6ZRI0 2925 aa3.61□□□□□ -1.83
VPS35-201ENST00000299138 LCE2DQ5TA82 110 aaPredicted RBP3.59□□□□□ -1.83
VPS35-201ENST00000299138 P0C880 135 aa3.58□□□□□ -1.84
VPS35-201ENST00000299138 KRTAP10-8P60410 259 aa3.58□□□□□ -1.84
VPS35-201ENST00000299138 KRTAP21-3Q3LHN1 58 aa3.57□□□□□ -1.84
VPS35-201ENST00000299138 CSMD3Q7Z407 3707 aa3.53□□□□□ -1.84
VPS35-201ENST00000299138 TENM1Q9UKZ4 2725 aa3.52□□□□□ -1.85
VPS35-201ENST00000299138 STAB2Q8WWQ8 2551 aa3.51□□□□□ -1.85
VPS35-201ENST00000299138 DNHD1Q96M86 4753 aa3.51□□□□□ -1.85
VPS35-201ENST00000299138 KRTAP13-2Q52LG2 175 aa3.51□□□□□ -1.85
VPS35-201ENST00000299138 NBEAL1Q6ZS30 2694 aa3.51□□□□□ -1.85
VPS35-201ENST00000299138 KRTAP10-2P60368 255 aa3.48□□□□□ -1.85
VPS35-201ENST00000299138 ANK2Q01484 3957 aa3.48□□□□□ -1.85
VPS35-201ENST00000299138 KRTAP1-4P0C5Y4 121 aa3.47□□□□□ -1.85
VPS35-201ENST00000299138 KRTAP10-1P60331 282 aa3.46□□□□□ -1.86
VPS35-201ENST00000299138 VWFP04275 2813 aa3.46□□□□□ -1.86
VPS35-201ENST00000299138 TENM3Q9P273 2699 aa3.44□□□□□ -1.86
VPS35-201ENST00000299138 H0YAA0 97 aa3.43□□□□□ -1.86
VPS35-201ENST00000299138 FBN1P35555 2871 aaKnown RBP3.43□□□□□ -1.86
VPS35-201ENST00000299138 CMYA5Q8N3K9 4069 aa3.36□□□□□ -1.87
VPS35-201ENST00000299138 FBN3Q75N90 2809 aa3.35□□□□□ -1.87
VPS35-201ENST00000299138 A0A1B0GVY2 172 aa3.35□□□□□ -1.87
VPS35-201ENST00000299138 LCE2CQ5TA81 110 aa3.34□□□□□ -1.87
VPS35-201ENST00000299138 LCE2BO14633 110 aa3.33□□□□□ -1.88
VPS35-201ENST00000299138 TRRAPQ9Y4A5 3859 aa3.32□□□□□ -1.88
VPS35-201ENST00000299138 PKD1L1Q8TDX9 2849 aa3.32□□□□□ -1.88
VPS35-201ENST00000299138 HUWE1Q7Z6Z7 4374 aaKnown RBP3.31□□□□□ -1.88
VPS35-201ENST00000299138 COL7A1Q02388 2944 aa3.31□□□□□ -1.88
VPS35-201ENST00000299138 KRTAP12-2P59991 146 aa3.29□□□□□ -1.88
VPS35-201ENST00000299138 XP32Q5T750 250 aa3.28□□□□□ -1.88
VPS35-201ENST00000299138 KRTAP3-1Q9BYR8 98 aa3.27□□□□□ -1.89
VPS35-201ENST00000299138 DNAH9Q9NYC9 4486 aa3.26□□□□□ -1.89
VPS35-201ENST00000299138 LYSTQ99698 3801 aa3.24□□□□□ -1.89
VPS35-201ENST00000299138 KRTAP10-6P60371 365 aaPredicted RBP3.23□□□□□ -1.89
VPS35-201ENST00000299138 TENM2Q9NT68 2774 aa3.22□□□□□ -1.89
VPS35-201ENST00000299138 TPRXLQ17RH7 258 aa3.22□□□□□ -1.89
VPS35-201ENST00000299138 FRAS1Q86XX4 4008 aa3.22□□□□□ -1.89
VPS35-201ENST00000299138 PRKDCP78527 4128 aaKnown RBP3.22□□□□□ -1.89
VPS35-201ENST00000299138 PRO2289Q9P1D8 64 aa3.21□□□□□ -1.9
VPS35-201ENST00000299138 INE1O15225 51 aa3.2□□□□□ -1.9
VPS35-201ENST00000299138 KMT2CQ8NEZ4 4911 aaKnown RBP3.2□□□□□ -1.9
VPS35-201ENST00000299138 KRTAP15-1Q3LI76 137 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms