RNA–Protein interactions for RNA: ENST00000289292.11

SHROOM4-201, Transcript of shroom family member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM4, Length 6,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4-201ENST00000289292 A8MUU9 505 aa8.52□□□□□ -1.04
SHROOM4-201ENST00000289292 COL12A1Q99715 3063 aa8.52□□□□□ -1.04
SHROOM4-201ENST00000289292 IGSF10Q6WRI0 2623 aa8.51□□□□□ -1.05
SHROOM4-201ENST00000289292 LOC400499M0QZD8 3231 aa8.49□□□□□ -1.05
SHROOM4-201ENST00000289292 PLAC4Q8WY50 150 aa8.46□□□□□ -1.05
SHROOM4-201ENST00000289292 ASPMQ8IZT6 3477 aa8.45□□□□□ -1.06
SHROOM4-201ENST00000289292 ITPR1Q14643 2758 aa8.45□□□□□ -1.06
SHROOM4-201ENST00000289292 DMBT1Q9UGM3 2413 aaPredicted RBP8.45□□□□□ -1.06
SHROOM4-201ENST00000289292 APCP25054 2843 aa8.45□□□□□ -1.06
SHROOM4-201ENST00000289292 ZFHX4Q86UP3 3567 aa8.44□□□□□ -1.06
SHROOM4-201ENST00000289292 BAHCC1Q9P281 2608 aa8.44□□□□□ -1.06
SHROOM4-201ENST00000289292 NOTCH1P46531 2555 aa8.44□□□□□ -1.06
SHROOM4-201ENST00000289292 C20orf166-AS1Q96NR2 134 aa8.43□□□□□ -1.06
SHROOM4-201ENST00000289292 COL6A5A8TX70 2615 aa8.43□□□□□ -1.06
SHROOM4-201ENST00000289292 RPS29P62273 56 aaKnown RBP8.41□□□□□ -1.06
SHROOM4-201ENST00000289292 UBR5O95071 2799 aaPredicted RBP8.41□□□□□ -1.06
SHROOM4-201ENST00000289292 UTP20O75691 2785 aaKnown RBP8.4□□□□□ -1.06
SHROOM4-201ENST00000289292 C10orf95Q9H7T3 257 aa8.39□□□□□ -1.07
SHROOM4-201ENST00000289292 CSMD1Q96PZ7 3565 aa8.36□□□□□ -1.07
SHROOM4-201ENST00000289292 ITPR2Q14571 2701 aa8.36□□□□□ -1.07
SHROOM4-201ENST00000289292 FLG2Q5D862 2391 aaPredicted RBP8.35□□□□□ -1.07
SHROOM4-201ENST00000289292 HIVEP1P15822 2718 aa8.35□□□□□ -1.07
SHROOM4-201ENST00000289292 STAB1Q9NY15 2570 aa8.34□□□□□ -1.07
SHROOM4-201ENST00000289292 DMXL1Q9Y485 3027 aa8.33□□□□□ -1.08
SHROOM4-201ENST00000289292 TNRC18O15417 2968 aaPredicted RBP8.32□□□□□ -1.08
SHROOM4-201ENST00000289292 NSD1Q96L73 2696 aaPredicted RBP8.29□□□□□ -1.08
SHROOM4-201ENST00000289292 HRNRQ86YZ3 2850 aaPredicted RBP8.29□□□□□ -1.08
SHROOM4-201ENST00000289292 H0YAA0 97 aa8.28□□□□□ -1.08
SHROOM4-201ENST00000289292 CRYBG3Q68DQ2 2970 aa8.25□□□□□ -1.09
SHROOM4-201ENST00000289292 STAB2Q8WWQ8 2551 aa8.24□□□□□ -1.09
SHROOM4-201ENST00000289292 RELNP78509 3460 aa8.23□□□□□ -1.09
SHROOM4-201ENST00000289292 FLNCQ14315 2725 aa8.2□□□□□ -1.1
SHROOM4-201ENST00000289292 KRTAP1-4P0C5Y4 121 aa8.18□□□□□ -1.1
SHROOM4-201ENST00000289292 LAMA5O15230 3695 aa8.18□□□□□ -1.1
SHROOM4-201ENST00000289292 CELSR2Q9HCU4 2923 aa8.17□□□□□ -1.1
SHROOM4-201ENST00000289292 SMG1Q96Q15 3661 aaKnown RBP8.16□□□□□ -1.1
SHROOM4-201ENST00000289292 KMT2BQ9UMN6 2715 aaPredicted RBP8.12□□□□□ -1.11
SHROOM4-201ENST00000289292 ZANQ9Y493 2812 aa8.1□□□□□ -1.11
SHROOM4-201ENST00000289292 DMDP11532 3685 aa8.1□□□□□ -1.11
SHROOM4-201ENST00000289292 TNP1P09430 55 aa8.09□□□□□ -1.11
SHROOM4-201ENST00000289292 FBN2P35556 2912 aa8.08□□□□□ -1.12
SHROOM4-201ENST00000289292 XP32Q5T750 250 aa8.06□□□□□ -1.12
SHROOM4-201ENST00000289292 DCHS2Q6V1P9 2916 aa8.05□□□□□ -1.12
SHROOM4-201ENST00000289292 A0A1B0GVY2 172 aa8.02□□□□□ -1.13
SHROOM4-201ENST00000289292 P0C880 135 aa8.02□□□□□ -1.13
SHROOM4-201ENST00000289292 KRTAP10-8P60410 259 aa8.01□□□□□ -1.13
SHROOM4-201ENST00000289292 SVEP1Q4LDE5 3571 aa7.97□□□□□ -1.13
SHROOM4-201ENST00000289292 KRTAP13-3Q3SY46 172 aa7.9□□□□□ -1.14
SHROOM4-201ENST00000289292 CELSR1Q9NYQ6 3014 aa7.89□□□□□ -1.15
SHROOM4-201ENST00000289292 PP632Q6XCG6 107 aa7.88□□□□□ -1.15
SHROOM4-201ENST00000289292 NIPBLQ6KC79 2804 aaeCLIP7.88□□□□□ -1.15
SHROOM4-201ENST00000289292 NBPF19A0A087WUL8 3843 aa7.85□□□□□ -1.15
SHROOM4-201ENST00000289292 NF1P21359 2839 aa7.83□□□□□ -1.16
SHROOM4-201ENST00000289292 KRTAP12-2P59991 146 aa7.78□□□□□ -1.16
SHROOM4-201ENST00000289292 SPENQ96T58 3664 aaKnown RBP7.77□□□□□ -1.17
SHROOM4-201ENST00000289292 MXRA5Q9NR99 2828 aa7.73□□□□□ -1.17
SHROOM4-201ENST00000289292 CUBNO60494 3623 aa7.72□□□□□ -1.17
SHROOM4-201ENST00000289292 TGP01266 2768 aa7.72□□□□□ -1.17
SHROOM4-201ENST00000289292 TPRXLQ17RH7 258 aa7.68□□□□□ -1.18
SHROOM4-201ENST00000289292 TENM4Q6N022 2769 aa7.64□□□□□ -1.19
SHROOM4-201ENST00000289292 TENM3Q9P273 2699 aa7.6□□□□□ -1.19
SHROOM4-201ENST00000289292 KRTAP10-10P60014 251 aa7.59□□□□□ -1.19
SHROOM4-201ENST00000289292 MUC3AQ02505 3323 aa7.59□□□□□ -1.19
SHROOM4-201ENST00000289292 KRTAP3-1Q9BYR8 98 aa7.59□□□□□ -1.19
SHROOM4-201ENST00000289292 ANK3Q12955 4377 aaKnown RBP7.58□□□□□ -1.2
SHROOM4-201ENST00000289292 BSNQ9UPA5 3926 aa7.56□□□□□ -1.2
SHROOM4-201ENST00000289292 KRTAP12-1P59990 96 aa7.54□□□□□ -1.2
SHROOM4-201ENST00000289292 TENM2Q9NT68 2774 aa7.52□□□□□ -1.21
SHROOM4-201ENST00000289292 CSMD2Q7Z408 3487 aa7.51□□□□□ -1.21
SHROOM4-201ENST00000289292 KRTAP21-3Q3LHN1 58 aa7.5□□□□□ -1.21
SHROOM4-201ENST00000289292 TENM1Q9UKZ4 2725 aa7.5□□□□□ -1.21
SHROOM4-201ENST00000289292 KRTAP13-4Q3LI77 160 aa7.48□□□□□ -1.21
SHROOM4-201ENST00000289292 VPS13CQ709C8 3753 aa7.4□□□□□ -1.22
SHROOM4-201ENST00000289292 PDZD2O15018 2839 aa7.4□□□□□ -1.22
SHROOM4-201ENST00000289292 ZFHX3Q15911 3703 aa7.35□□□□□ -1.23
SHROOM4-201ENST00000289292 KRTAP10-6P60371 365 aaPredicted RBP7.34□□□□□ -1.24
SHROOM4-201ENST00000289292 TRRAPQ9Y4A5 3859 aa7.32□□□□□ -1.24
SHROOM4-201ENST00000289292 PRO2289Q9P1D8 64 aa7.31□□□□□ -1.24
SHROOM4-201ENST00000289292 VWFP04275 2813 aa7.27□□□□□ -1.25
SHROOM4-201ENST00000289292 PKD1L1Q8TDX9 2849 aa7.25□□□□□ -1.25
SHROOM4-201ENST00000289292 KRTAP15-1Q3LI76 137 aa7.25□□□□□ -1.25
SHROOM4-201ENST00000289292 HUWE1Q7Z6Z7 4374 aaKnown RBP7.23□□□□□ -1.25
SHROOM4-201ENST00000289292 FBN1P35555 2871 aaKnown RBP7.2□□□□□ -1.26
SHROOM4-201ENST00000289292 OTOGQ6ZRI0 2925 aa7.12□□□□□ -1.27
SHROOM4-201ENST00000289292 AKAP9Q99996 3911 aa7.12□□□□□ -1.27
SHROOM4-201ENST00000289292 FBN3Q75N90 2809 aa7.1□□□□□ -1.27
SHROOM4-201ENST00000289292 KRTAP3-3Q9BYR6 98 aa7.1□□□□□ -1.27
SHROOM4-201ENST00000289292 CSMD3Q7Z407 3707 aa7.1□□□□□ -1.27
SHROOM4-201ENST00000289292 KRTAP3-2Q9BYR7 98 aa7.09□□□□□ -1.27
SHROOM4-201ENST00000289292 MEGF8Q7Z7M0 2845 aa7.04□□□□□ -1.28
SHROOM4-201ENST00000289292 SRRM2Q9UQ35 2752 aaKnown RBP7.01□□□□□ -1.29
SHROOM4-201ENST00000289292 ZNF469Q96JG9 3925 aaPredicted RBP6.9□□□□□ -1.31
SHROOM4-201ENST00000289292 MT1HL1P0DM35 61 aa6.88□□□□□ -1.31
SHROOM4-201ENST00000289292 INE1O15225 51 aa6.84□□□□□ -1.32
SHROOM4-201ENST00000289292 COL7A1Q02388 2944 aa6.79□□□□□ -1.32
SHROOM4-201ENST00000289292 KRTAP10-4P60372 401 aaPredicted RBP6.78□□□□□ -1.32
SHROOM4-201ENST00000289292 ALMS1Q8TCU4 4167 aa6.77□□□□□ -1.33
SHROOM4-201ENST00000289292 LORP23490 312 aaPredicted RBP6.76□□□□□ -1.33
SHROOM4-201ENST00000289292 KRTAP4-5Q9BYR2 181 aa6.73□□□□□ -1.33
SHROOM4-201ENST00000289292 DNAH10Q8IVF4 4471 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms