RNA–Protein interactions for RNA: ENST00000267970.8

TSPAN3-201, Transcript of tetraspanin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSPAN3, Length 6,467 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-201ENST00000267970 KRTAP13-1Q8IUC0 172 aa9.15□□□□□ -0.94
TSPAN3-201ENST00000267970 NBEAQ8NFP9 2946 aa9.14□□□□□ -0.95
TSPAN3-201ENST00000267970 NSD1Q96L73 2696 aaPredicted RBP9.14□□□□□ -0.95
TSPAN3-201ENST00000267970 TACC2O95359 2948 aa9.14□□□□□ -0.95
TSPAN3-201ENST00000267970 APCP25054 2843 aa9.13□□□□□ -0.95
TSPAN3-201ENST00000267970 KRTAP10-8P60410 259 aa9.13□□□□□ -0.95
TSPAN3-201ENST00000267970 FRYLO94915 3013 aa9.12□□□□□ -0.95
TSPAN3-201ENST00000267970 ZNF292O60281 2723 aa9.09□□□□□ -0.95
TSPAN3-201ENST00000267970 UBR5O95071 2799 aaPredicted RBP9.09□□□□□ -0.95
TSPAN3-201ENST00000267970 RPS29P62273 56 aaKnown RBP9.06□□□□□ -0.96
TSPAN3-201ENST00000267970 HIVEP1P15822 2718 aa9.05□□□□□ -0.96
TSPAN3-201ENST00000267970 COL12A1Q99715 3063 aa9.03□□□□□ -0.96
TSPAN3-201ENST00000267970 ATMQ13315 3056 aa9.02□□□□□ -0.97
TSPAN3-201ENST00000267970 ADGRG4Q8IZF6 3080 aa9.01□□□□□ -0.97
TSPAN3-201ENST00000267970 ITPR1Q14643 2758 aa9.01□□□□□ -0.97
TSPAN3-201ENST00000267970 H0YAA0 97 aa9□□□□□ -0.97
TSPAN3-201ENST00000267970 ITPR2Q14571 2701 aa8.97□□□□□ -0.97
TSPAN3-201ENST00000267970 UTP20O75691 2785 aaKnown RBP8.96□□□□□ -0.97
TSPAN3-201ENST00000267970 KMT2BQ9UMN6 2715 aaPredicted RBP8.96□□□□□ -0.98
TSPAN3-201ENST00000267970 MYO15AQ9UKN7 3530 aa8.95□□□□□ -0.98
TSPAN3-201ENST00000267970 P0C880 135 aa8.95□□□□□ -0.98
TSPAN3-201ENST00000267970 SPTBN5Q9NRC6 3674 aaKnown RBP8.94□□□□□ -0.98
TSPAN3-201ENST00000267970 USP34Q70CQ2 3546 aa8.92□□□□□ -0.98
TSPAN3-201ENST00000267970 ZZEF1O43149 2961 aa8.88□□□□□ -0.99
TSPAN3-201ENST00000267970 XP32Q5T750 250 aa8.86□□□□□ -0.99
TSPAN3-201ENST00000267970 IGSF10Q6WRI0 2623 aa8.84□□□□□ -0.99
TSPAN3-201ENST00000267970 PP632Q6XCG6 107 aa8.83□□□□□ -1
TSPAN3-201ENST00000267970 WDFY3Q8IZQ1 3526 aa8.81□□□□□ -1
TSPAN3-201ENST00000267970 EYSQ5T1H1 3165 aa8.79□□□□□ -1
TSPAN3-201ENST00000267970 CELSR2Q9HCU4 2923 aa8.77□□□□□ -1.01
TSPAN3-201ENST00000267970 DCHS1Q96JQ0 3298 aa8.77□□□□□ -1.01
TSPAN3-201ENST00000267970 KRTAP1-4P0C5Y4 121 aa8.76□□□□□ -1.01
TSPAN3-201ENST00000267970 ASPMQ8IZT6 3477 aa8.74□□□□□ -1.01
TSPAN3-201ENST00000267970 KRTAP10-10P60014 251 aa8.74□□□□□ -1.01
TSPAN3-201ENST00000267970 LOC400499M0QZD8 3231 aa8.69□□□□□ -1.02
TSPAN3-201ENST00000267970 DMXL1Q9Y485 3027 aa8.65□□□□□ -1.03
TSPAN3-201ENST00000267970 TNRC18O15417 2968 aaPredicted RBP8.63□□□□□ -1.03
TSPAN3-201ENST00000267970 DCHS2Q6V1P9 2916 aa8.59□□□□□ -1.03
TSPAN3-201ENST00000267970 CSMD1Q96PZ7 3565 aa8.55□□□□□ -1.04
TSPAN3-201ENST00000267970 KRTAP12-2P59991 146 aa8.54□□□□□ -1.04
TSPAN3-201ENST00000267970 ZFHX4Q86UP3 3567 aa8.53□□□□□ -1.04
TSPAN3-201ENST00000267970 FLNCQ14315 2725 aa8.45□□□□□ -1.06
TSPAN3-201ENST00000267970 TENM4Q6N022 2769 aa8.43□□□□□ -1.06
TSPAN3-201ENST00000267970 CELSR1Q9NYQ6 3014 aa8.42□□□□□ -1.06
TSPAN3-201ENST00000267970 RELNP78509 3460 aa8.42□□□□□ -1.06
TSPAN3-201ENST00000267970 LAMA5O15230 3695 aa8.42□□□□□ -1.06
TSPAN3-201ENST00000267970 FBN2P35556 2912 aa8.41□□□□□ -1.06
TSPAN3-201ENST00000267970 KRTAP13-3Q3SY46 172 aa8.41□□□□□ -1.06
TSPAN3-201ENST00000267970 TPRXLQ17RH7 258 aa8.4□□□□□ -1.06
TSPAN3-201ENST00000267970 PRO2289Q9P1D8 64 aa8.39□□□□□ -1.07
TSPAN3-201ENST00000267970 TGP01266 2768 aa8.38□□□□□ -1.07
TSPAN3-201ENST00000267970 ZANQ9Y493 2812 aa8.35□□□□□ -1.07
TSPAN3-201ENST00000267970 NF1P21359 2839 aa8.33□□□□□ -1.08
TSPAN3-201ENST00000267970 TENM1Q9UKZ4 2725 aa8.31□□□□□ -1.08
TSPAN3-201ENST00000267970 HRNRQ86YZ3 2850 aaPredicted RBP8.26□□□□□ -1.09
TSPAN3-201ENST00000267970 NBPF19A0A087WUL8 3843 aa8.25□□□□□ -1.09
TSPAN3-201ENST00000267970 TENM2Q9NT68 2774 aa8.25□□□□□ -1.09
TSPAN3-201ENST00000267970 NIPBLQ6KC79 2804 aaeCLIP8.24□□□□□ -1.09
TSPAN3-201ENST00000267970 KRTAP12-1P59990 96 aa8.2□□□□□ -1.1
TSPAN3-201ENST00000267970 CUBNO60494 3623 aa8.15□□□□□ -1.1
TSPAN3-201ENST00000267970 KRTAP13-4Q3LI77 160 aa8.15□□□□□ -1.11
TSPAN3-201ENST00000267970 SMG1Q96Q15 3661 aaKnown RBP8.14□□□□□ -1.11
TSPAN3-201ENST00000267970 KRTAP15-1Q3LI76 137 aa8.12□□□□□ -1.11
TSPAN3-201ENST00000267970 TENM3Q9P273 2699 aa8.11□□□□□ -1.11
TSPAN3-201ENST00000267970 VWFP04275 2813 aa8.09□□□□□ -1.11
TSPAN3-201ENST00000267970 SVEP1Q4LDE5 3571 aa8.09□□□□□ -1.11
TSPAN3-201ENST00000267970 PKD1L1Q8TDX9 2849 aa8.08□□□□□ -1.12
TSPAN3-201ENST00000267970 KRTAP3-1Q9BYR8 98 aa8.07□□□□□ -1.12
TSPAN3-201ENST00000267970 MXRA5Q9NR99 2828 aa8.02□□□□□ -1.13
TSPAN3-201ENST00000267970 PDZD2O15018 2839 aa8.01□□□□□ -1.13
TSPAN3-201ENST00000267970 CRCT1Q9UGL9 99 aa8□□□□□ -1.13
TSPAN3-201ENST00000267970 KRTAP21-3Q3LHN1 58 aa7.99□□□□□ -1.13
TSPAN3-201ENST00000267970 DMDP11532 3685 aa7.98□□□□□ -1.13
TSPAN3-201ENST00000267970 SPENQ96T58 3664 aaKnown RBP7.96□□□□□ -1.14
TSPAN3-201ENST00000267970 KRTAP10-6P60371 365 aaPredicted RBP7.81□□□□□ -1.16
TSPAN3-201ENST00000267970 ZFHX3Q15911 3703 aa7.8□□□□□ -1.16
TSPAN3-201ENST00000267970 CSMD2Q7Z408 3487 aa7.76□□□□□ -1.17
TSPAN3-201ENST00000267970 INE1O15225 51 aa7.68□□□□□ -1.18
TSPAN3-201ENST00000267970 MUC3AQ02505 3323 aa7.6□□□□□ -1.19
TSPAN3-201ENST00000267970 FBN1P35555 2871 aaKnown RBP7.59□□□□□ -1.19
TSPAN3-201ENST00000267970 SRRM2Q9UQ35 2752 aaKnown RBP7.58□□□□□ -1.2
TSPAN3-201ENST00000267970 MEGF8Q7Z7M0 2845 aa7.58□□□□□ -1.2
TSPAN3-201ENST00000267970 FBN3Q75N90 2809 aa7.57□□□□□ -1.2
TSPAN3-201ENST00000267970 ANK3Q12955 4377 aaKnown RBP7.51□□□□□ -1.21
TSPAN3-201ENST00000267970 TRRAPQ9Y4A5 3859 aa7.51□□□□□ -1.21
TSPAN3-201ENST00000267970 KRTAP10-12P60413 245 aa7.51□□□□□ -1.21
TSPAN3-201ENST00000267970 CSMD3Q7Z407 3707 aa7.51□□□□□ -1.21
TSPAN3-201ENST00000267970 KRTAP3-3Q9BYR6 98 aa7.48□□□□□ -1.21
TSPAN3-201ENST00000267970 KRTAP3-2Q9BYR7 98 aa7.48□□□□□ -1.21
TSPAN3-201ENST00000267970 COL7A1Q02388 2944 aa7.45□□□□□ -1.22
TSPAN3-201ENST00000267970 VPS13CQ709C8 3753 aa7.44□□□□□ -1.22
TSPAN3-201ENST00000267970 LCE3AQ5TA76 89 aa7.38□□□□□ -1.23
TSPAN3-201ENST00000267970 KRTAP4-5Q9BYR2 181 aa7.33□□□□□ -1.24
TSPAN3-201ENST00000267970 OTOGQ6ZRI0 2925 aa7.32□□□□□ -1.24
TSPAN3-201ENST00000267970 KRTAP12-3P60328 96 aa7.32□□□□□ -1.24
TSPAN3-201ENST00000267970 LORP23490 312 aaPredicted RBP7.31□□□□□ -1.24
TSPAN3-201ENST00000267970 MT1HL1P0DM35 61 aa7.31□□□□□ -1.24
TSPAN3-201ENST00000267970 KRTAP10-5P60370 271 aa7.31□□□□□ -1.24
TSPAN3-201ENST00000267970 HUWE1Q7Z6Z7 4374 aaKnown RBP7.28□□□□□ -1.24
TSPAN3-201ENST00000267970 BSNQ9UPA5 3926 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms