RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 RBM12B-AS1Q9P1G2 102 aa7.16□□□□□ -1.26
USHBP1-201ENST00000252597 A0A087WTM6 91 aa7.16□□□□□ -1.26
USHBP1-201ENST00000252597 Q5W150 140 aa7.16□□□□□ -1.26
USHBP1-201ENST00000252597 SPINK1P00995 79 aa7.15□□□□□ -1.26
USHBP1-201ENST00000252597 Q96NJ1 140 aa7.15□□□□□ -1.26
USHBP1-201ENST00000252597 ZNF706Q9Y5V0 76 aaPredicted RBP7.15□□□□□ -1.27
USHBP1-201ENST00000252597 IGKV2D-30A0A075B6S6 120 aa7.14□□□□□ -1.27
USHBP1-201ENST00000252597 IGKV2-30P06310 120 aa7.14□□□□□ -1.27
USHBP1-201ENST00000252597 SPACA4Q8TDM5 124 aa7.13□□□□□ -1.27
USHBP1-201ENST00000252597 PRKDCP78527 4128 aaKnown RBP7.13□□□□□ -1.27
USHBP1-201ENST00000252597 WWC2-AS2Q96NR7 200 aa7.13□□□□□ -1.27
USHBP1-201ENST00000252597 ZNF861PO60384 105 aa7.12□□□□□ -1.27
USHBP1-201ENST00000252597 Q75L30 129 aa7.11□□□□□ -1.27
USHBP1-201ENST00000252597 NUPR2A6NF83 97 aa7.1□□□□□ -1.27
USHBP1-201ENST00000252597 ATP11AUNQ6ZP68 121 aa7.1□□□□□ -1.27
USHBP1-201ENST00000252597 KTN1-AS1Q86SY8 53 aa7.1□□□□□ -1.27
USHBP1-201ENST00000252597 DNAH1Q9P2D7 4330 aa7.09□□□□□ -1.27
USHBP1-201ENST00000252597 KRTAP13-1Q8IUC0 172 aa7.09□□□□□ -1.28
USHBP1-201ENST00000252597 PRAC1Q96KF2 57 aa7.09□□□□□ -1.28
USHBP1-201ENST00000252597 H3BS24 57 aa7.08□□□□□ -1.28
USHBP1-201ENST00000252597 KRTAP21-3Q3LHN1 58 aa7.08□□□□□ -1.28
USHBP1-201ENST00000252597 CDC42SE1Q9NRR8 79 aa7.07□□□□□ -1.28
USHBP1-201ENST00000252597 Q6ZRN7 208 aaPredicted RBP7.06□□□□□ -1.28
USHBP1-201ENST00000252597 KMT2AQ03164 3969 aa7.06□□□□□ -1.28
USHBP1-201ENST00000252597 STARD9Q9P2P6 4700 aa7.05□□□□□ -1.28
USHBP1-201ENST00000252597 LINC00313P59037 77 aa7.05□□□□□ -1.28
USHBP1-201ENST00000252597 LINC01558Q9Y6Z2 57 aa7.05□□□□□ -1.28
USHBP1-201ENST00000252597 A0A1B0GU69 56 aa7.04□□□□□ -1.28
USHBP1-201ENST00000252597 ACYP2P14621 99 aa7.04□□□□□ -1.28
USHBP1-201ENST00000252597 C1orf134Q5TEV5 83 aa7.04□□□□□ -1.28
USHBP1-201ENST00000252597 Q6ZR54 194 aa7.04□□□□□ -1.28
USHBP1-201ENST00000252597 IGLV7-43P04211 117 aa7.02□□□□□ -1.29
USHBP1-201ENST00000252597 FRAS1Q86XX4 4008 aa7.02□□□□□ -1.29
USHBP1-201ENST00000252597 DMBT1Q9UGM3 2413 aaPredicted RBP7.01□□□□□ -1.29
USHBP1-201ENST00000252597 ADM2Q7Z4H4 148 aa7.01□□□□□ -1.29
USHBP1-201ENST00000252597 FLG2Q5D862 2391 aaPredicted RBP7□□□□□ -1.29
USHBP1-201ENST00000252597 DYNC2H1Q8NCM8 4307 aaKnown RBP6.98□□□□□ -1.29
USHBP1-201ENST00000252597 LINC00483Q53H64 154 aa6.98□□□□□ -1.29
USHBP1-201ENST00000252597 C7orf65Q6ZTY9 151 aa6.98□□□□□ -1.29
USHBP1-201ENST00000252597 A6NN06 94 aa6.98□□□□□ -1.29
USHBP1-201ENST00000252597 Q8N1X5 172 aa6.97□□□□□ -1.29
USHBP1-201ENST00000252597 KRTAP10-2P60368 255 aa6.94□□□□□ -1.3
USHBP1-201ENST00000252597 PLAC8Q9NZF1 115 aa6.94□□□□□ -1.3
USHBP1-201ENST00000252597 ASB16-AS1Q495Z4 193 aa6.94□□□□□ -1.3
USHBP1-201ENST00000252597 FAM229AH3BQW9 127 aa6.93□□□□□ -1.3
USHBP1-201ENST00000252597 C8orf87E5RJ46 101 aa6.91□□□□□ -1.3
USHBP1-201ENST00000252597 DNAH11Q96DT5 4516 aa6.9□□□□□ -1.3
USHBP1-201ENST00000252597 DNAH8Q96JB1 4490 aa6.9□□□□□ -1.31
USHBP1-201ENST00000252597 VPS13DQ5THJ4 4388 aa6.9□□□□□ -1.31
USHBP1-201ENST00000252597 MIR22HGQ0VDD5 57 aa6.89□□□□□ -1.31
USHBP1-201ENST00000252597 PLA2G1BP04054 148 aaKnown RBP6.88□□□□□ -1.31
USHBP1-201ENST00000252597 SSBP3-AS1Q7Z2R9 100 aa6.88□□□□□ -1.31
USHBP1-201ENST00000252597 SMR3BP02814 79 aaPredicted RBP6.88□□□□□ -1.31
USHBP1-201ENST00000252597 DNAH6Q9C0G6 4158 aa6.87□□□□□ -1.31
USHBP1-201ENST00000252597 C9orf92A6NGG3 77 aa6.86□□□□□ -1.31
USHBP1-201ENST00000252597 UQCR11O14957 56 aa6.84□□□□□ -1.31
USHBP1-201ENST00000252597 KRTAP13-2Q52LG2 175 aa6.84□□□□□ -1.31
USHBP1-201ENST00000252597 TYMSOSQ8TAI1 123 aa6.84□□□□□ -1.31
USHBP1-201ENST00000252597 DNAH2Q9P225 4427 aa6.84□□□□□ -1.31
USHBP1-201ENST00000252597 DMAC1Q96GE9 116 aa6.84□□□□□ -1.31
USHBP1-201ENST00000252597 DNAH17Q9UFH2 4485 aa6.82□□□□□ -1.32
USHBP1-201ENST00000252597 KRTAP10-1P60331 282 aa6.82□□□□□ -1.32
USHBP1-201ENST00000252597 HECTD4Q9Y4D8 3996 aa6.81□□□□□ -1.32
USHBP1-201ENST00000252597 KRTAP13-3Q3SY46 172 aa6.79□□□□□ -1.32
USHBP1-201ENST00000252597 CSAG1Q6PB30 78 aa6.76□□□□□ -1.33
USHBP1-201ENST00000252597 CRIPTQ9P021 101 aa6.76□□□□□ -1.33
USHBP1-201ENST00000252597 HYDINQ4G0P3 5121 aa6.75□□□□□ -1.33
USHBP1-201ENST00000252597 LRP1BQ9NZR2 4599 aa6.73□□□□□ -1.33
USHBP1-201ENST00000252597 LINC01554Q52M75 96 aa6.69□□□□□ -1.34
USHBP1-201ENST00000252597 SPATA8Q6RVD6 105 aa6.69□□□□□ -1.34
USHBP1-201ENST00000252597 FAT1Q14517 4588 aa6.68□□□□□ -1.34
USHBP1-201ENST00000252597 LINC00304Q8N9R0 145 aa6.67□□□□□ -1.34
USHBP1-201ENST00000252597 KRTAP16-1A8MUX0 517 aa6.66□□□□□ -1.34
USHBP1-201ENST00000252597 PKHD1P08F94 4074 aa6.65□□□□□ -1.34
USHBP1-201ENST00000252597 KRTAP1-4P0C5Y4 121 aa6.64□□□□□ -1.35
USHBP1-201ENST00000252597 DNAH5Q8TE73 4624 aa6.63□□□□□ -1.35
USHBP1-201ENST00000252597 ALMS1Q8TCU4 4167 aa6.6□□□□□ -1.35
USHBP1-201ENST00000252597 FAT2Q9NYQ8 4349 aa6.59□□□□□ -1.36
USHBP1-201ENST00000252597 A0A0D9SG42 100 aa6.57□□□□□ -1.36
USHBP1-201ENST00000252597 A0A1B0GU33 70 aa6.57□□□□□ -1.36
USHBP1-201ENST00000252597 VPS13BQ7Z7G8 4022 aa6.57□□□□□ -1.36
USHBP1-201ENST00000252597 PKD1P98161 4303 aa6.56□□□□□ -1.36
USHBP1-201ENST00000252597 Q6ZSA8 131 aa6.55□□□□□ -1.36
USHBP1-201ENST00000252597 MYCBP2O75592 4640 aa6.54□□□□□ -1.36
USHBP1-201ENST00000252597 SACSQ9NZJ4 4579 aa6.53□□□□□ -1.36
USHBP1-201ENST00000252597 KMT2CQ8NEZ4 4911 aaKnown RBP6.53□□□□□ -1.36
USHBP1-201ENST00000252597 H0YAA0 97 aa6.52□□□□□ -1.37
USHBP1-201ENST00000252597 K7ERS5 55 aa6.5□□□□□ -1.37
USHBP1-201ENST00000252597 H1FX-AS1Q4G0G2 97 aa6.44□□□□□ -1.38
USHBP1-201ENST00000252597 DYNC1H1Q14204 4646 aaKnown RBP6.42□□□□□ -1.38
USHBP1-201ENST00000252597 KRTAP3-1Q9BYR8 98 aa6.42□□□□□ -1.38
USHBP1-201ENST00000252597 LRP1Q07954 4544 aaKnown RBP6.4□□□□□ -1.38
USHBP1-201ENST00000252597 A8MUU9 505 aa6.38□□□□□ -1.39
USHBP1-201ENST00000252597 RYR2Q92736 4967 aa6.38□□□□□ -1.39
USHBP1-201ENST00000252597 COX6B2Q6YFQ2 88 aa6.37□□□□□ -1.39
USHBP1-201ENST00000252597 FAT3Q8TDW7 4589 aa6.36□□□□□ -1.39
USHBP1-201ENST00000252597 A0A1B0GVY2 172 aa6.36□□□□□ -1.39
USHBP1-201ENST00000252597 KRTAP25-1Q3LHN0 102 aa6.36□□□□□ -1.39
USHBP1-201ENST00000252597 RYR3Q15413 4870 aa6.34□□□□□ -1.39
USHBP1-201ENST00000252597 SPINT4Q6UDR6 99 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms