RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 MMP24-AS1A0A0U1RRL7 71 aa13.12□□□□□ -0.31
CDX1-201ENST00000231656 TMEM258P61165 79 aa13.12□□□□□ -0.31
CDX1-201ENST00000231656 TYMSOSQ8TAI1 123 aa13.09□□□□□ -0.31
CDX1-201ENST00000231656 A0A0U1RQV1 116 aa13.09□□□□□ -0.31
CDX1-201ENST00000231656 H7BZZ5 65 aa13.08□□□□□ -0.32
CDX1-201ENST00000231656 ASB16-AS1Q495Z4 193 aa13.08□□□□□ -0.32
CDX1-201ENST00000231656 FLG2Q5D862 2391 aaPredicted RBP13.08□□□□□ -0.32
CDX1-201ENST00000231656 A0A1B0GVX0 72 aa13.07□□□□□ -0.32
CDX1-201ENST00000231656 LRP1Q07954 4544 aaKnown RBP13.07□□□□□ -0.32
CDX1-201ENST00000231656 KRTAP4-5Q9BYR2 181 aa13.06□□□□□ -0.32
CDX1-201ENST00000231656 C8orf17Q9NRJ1 99 aa13.04□□□□□ -0.32
CDX1-201ENST00000231656 hDV103S1A0JD37 113 aa13.02□□□□□ -0.32
CDX1-201ENST00000231656 Q5XG85 94 aa13.02□□□□□ -0.32
CDX1-201ENST00000231656 IGHV6-1A0A0B4J1U7 121 aa13.02□□□□□ -0.33
CDX1-201ENST00000231656 NDUFC1O43677 76 aa13.02□□□□□ -0.33
CDX1-201ENST00000231656 HERC2O95714 4834 aa13.01□□□□□ -0.33
CDX1-201ENST00000231656 C5orf47Q569G3 176 aa13.01□□□□□ -0.33
CDX1-201ENST00000231656 MYCBP2O75592 4640 aa13□□□□□ -0.33
CDX1-201ENST00000231656 FAT3Q8TDW7 4589 aa12.99□□□□□ -0.33
CDX1-201ENST00000231656 TNXBP22105 4242 aa12.97□□□□□ -0.33
CDX1-201ENST00000231656 ZCCHC13Q8WW36 166 aaKnown RBP12.96□□□□□ -0.34
CDX1-201ENST00000231656 NOTCH2NLQ7Z3S9 236 aa12.94□□□□□ -0.34
CDX1-201ENST00000231656 LINC00304Q8N9R0 145 aa12.94□□□□□ -0.34
CDX1-201ENST00000231656 FAM236DA0A1B0GTK5 79 aa12.93□□□□□ -0.34
CDX1-201ENST00000231656 FAM236CP0DP71 79 aa12.93□□□□□ -0.34
CDX1-201ENST00000231656 KRTAP10-8P60410 259 aa12.92□□□□□ -0.34
CDX1-201ENST00000231656 C4orf48Q5BLP8 95 aa12.92□□□□□ -0.34
CDX1-201ENST00000231656 C1orf195Q5TG92 126 aa12.92□□□□□ -0.34
CDX1-201ENST00000231656 LIMD2Q9BT23 127 aa12.91□□□□□ -0.34
CDX1-201ENST00000231656 SPINK1P00995 79 aa12.89□□□□□ -0.35
CDX1-201ENST00000231656 MP68P56378 58 aa12.88□□□□□ -0.35
CDX1-201ENST00000231656 SPAG11AQ6PDA7 123 aa12.88□□□□□ -0.35
CDX1-201ENST00000231656 MRPL34Q9BQ48 92 aaKnown RBP12.88□□□□□ -0.35
CDX1-201ENST00000231656 ABCA13Q86UQ4 5058 aa12.87□□□□□ -0.35
CDX1-201ENST00000231656 H0Y9P7 68 aa12.86□□□□□ -0.35
CDX1-201ENST00000231656 TP53AIP1Q9HCN2 124 aa12.85□□□□□ -0.35
CDX1-201ENST00000231656 C8orf87E5RJ46 101 aa12.84□□□□□ -0.35
CDX1-201ENST00000231656 RPS28P62857 69 aaKnown RBP12.84□□□□□ -0.35
CDX1-201ENST00000231656 OXTP01178 125 aa12.83□□□□□ -0.36
CDX1-201ENST00000231656 H3BPC8 53 aa12.82□□□□□ -0.36
CDX1-201ENST00000231656 MT1HL1P0DM35 61 aa12.82□□□□□ -0.36
CDX1-201ENST00000231656 RPS29P62273 56 aaKnown RBP12.81□□□□□ -0.36
CDX1-201ENST00000231656 LINC00208Q96KT6 92 aa12.81□□□□□ -0.36
CDX1-201ENST00000231656 TRAV22A0A0B4J277 110 aa12.81□□□□□ -0.36
CDX1-201ENST00000231656 ATP5EP56381 51 aaPredicted RBP12.8□□□□□ -0.36
CDX1-201ENST00000231656 NDUFS5O43920 106 aa12.78□□□□□ -0.36
CDX1-201ENST00000231656 DMBT1Q9UGM3 2413 aaPredicted RBP12.77□□□□□ -0.36
CDX1-201ENST00000231656 LINC00313P59037 77 aa12.75□□□□□ -0.37
CDX1-201ENST00000231656 C1orf64Q8NEQ6 169 aa12.74□□□□□ -0.37
CDX1-201ENST00000231656 SERP1Q9Y6X1 66 aa12.72□□□□□ -0.37
CDX1-201ENST00000231656 KRTAP16-1A8MUX0 517 aa12.67□□□□□ -0.38
CDX1-201ENST00000231656 Q8N9P0 234 aaPredicted RBP12.65□□□□□ -0.38
CDX1-201ENST00000231656 KRTAP13-3Q3SY46 172 aa12.64□□□□□ -0.39
CDX1-201ENST00000231656 Q5W150 140 aa12.63□□□□□ -0.39
CDX1-201ENST00000231656 RETNLBQ9BQ08 111 aa12.6□□□□□ -0.39
CDX1-201ENST00000231656 CYP4F30PQ9H0H9 118 aa12.58□□□□□ -0.4
CDX1-201ENST00000231656 J3QL48 77 aa12.57□□□□□ -0.4
CDX1-201ENST00000231656 SPANXA2-OT1Q8N9U9 137 aa12.57□□□□□ -0.4
CDX1-201ENST00000231656 PCLOQ9Y6V0 5065 aa12.56□□□□□ -0.4
CDX1-201ENST00000231656 PRR4Q16378 134 aa12.53□□□□□ -0.4
CDX1-201ENST00000231656 LOC101927531A0A1B0GV80 90 aa12.51□□□□□ -0.41
CDX1-201ENST00000231656 PCOTHQ58A44 107 aa12.51□□□□□ -0.41
CDX1-201ENST00000231656 IGLV7-46A0A075B6I9 117 aa12.46□□□□□ -0.42
CDX1-201ENST00000231656 SMIM26A0A096LP01 95 aa12.43□□□□□ -0.42
CDX1-201ENST00000231656 FP248Q71RG6 208 aaPredicted RBP12.43□□□□□ -0.42
CDX1-201ENST00000231656 IGKV2-30P06310 120 aa12.37□□□□□ -0.43
CDX1-201ENST00000231656 C9orf92A6NGG3 77 aa12.33□□□□□ -0.44
CDX1-201ENST00000231656 C20orf166-AS1Q96NR2 134 aa12.3□□□□□ -0.44
CDX1-201ENST00000231656 A8MUU9 505 aa12.29□□□□□ -0.44
CDX1-201ENST00000231656 HRES1P13985 223 aa12.25□□□□□ -0.45
CDX1-201ENST00000231656 C4orf26Q17RF5 130 aa12.24□□□□□ -0.45
CDX1-201ENST00000231656 HERC1Q15751 4861 aa12.23□□□□□ -0.45
CDX1-201ENST00000231656 COA5Q86WW8 74 aa12.23□□□□□ -0.45
CDX1-201ENST00000231656 IGKV2D-30A0A075B6S6 120 aa12.22□□□□□ -0.45
CDX1-201ENST00000231656 TPRXLQ17RH7 258 aa12.18□□□□□ -0.46
CDX1-201ENST00000231656 MPLKIPQ8TAP9 179 aa12.18□□□□□ -0.46
CDX1-201ENST00000231656 LPAP08519 4548 aa12.15□□□□□ -0.47
CDX1-201ENST00000231656 C7orf65Q6ZTY9 151 aa12.13□□□□□ -0.47
CDX1-201ENST00000231656 DMAC1Q96GE9 116 aa12.13□□□□□ -0.47
CDX1-201ENST00000231656 Q1T7F1 81 aa12.12□□□□□ -0.47
CDX1-201ENST00000231656 Q75L30 129 aa12.12□□□□□ -0.47
CDX1-201ENST00000231656 XP32Q5T750 250 aa12.11□□□□□ -0.47
CDX1-201ENST00000231656 ACYP2P14621 99 aa12.07□□□□□ -0.48
CDX1-201ENST00000231656 LRP2P98164 4655 aa12.02□□□□□ -0.48
CDX1-201ENST00000231656 RPL37P61927 97 aaKnown RBP12□□□□□ -0.49
CDX1-201ENST00000231656 HMCN2Q8NDA2 5059 aa12□□□□□ -0.49
CDX1-201ENST00000231656 V9GYY9 64 aa11.99□□□□□ -0.49
CDX1-201ENST00000231656 SPINK7P58062 85 aa11.94□□□□□ -0.5
CDX1-201ENST00000231656 ATP11AUNQ6ZP68 121 aa11.91□□□□□ -0.5
CDX1-201ENST00000231656 PSPHP1O15172 72 aa11.89□□□□□ -0.51
CDX1-201ENST00000231656 CHKB-CPT1BH3BT56 60 aa11.88□□□□□ -0.51
CDX1-201ENST00000231656 A8MUN3 132 aa11.86□□□□□ -0.51
CDX1-201ENST00000231656 LINC01558Q9Y6Z2 57 aa11.84□□□□□ -0.51
CDX1-201ENST00000231656 PRR15LQ9BU68 103 aa11.81□□□□□ -0.52
CDX1-201ENST00000231656 Q5VV11 94 aa11.8□□□□□ -0.52
CDX1-201ENST00000231656 KRTAP3-1Q9BYR8 98 aa11.77□□□□□ -0.52
CDX1-201ENST00000231656 SEC61BP60468 96 aaKnown RBP11.74□□□□□ -0.53
CDX1-201ENST00000231656 COX6B2Q6YFQ2 88 aa11.69□□□□□ -0.54
CDX1-201ENST00000231656 MUC17Q685J3 4493 aa11.68□□□□□ -0.54
CDX1-201ENST00000231656 BRK1Q8WUW1 75 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms