RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 COX6CP09669 75 aa7.65□□□□□ -1.18
GTF3A-209ENST00000640289 SSBP3-AS1Q7Z2R9 100 aa7.65□□□□□ -1.18
GTF3A-209ENST00000640289 A0A1B0GX51 115 aa7.63□□□□□ -1.19
GTF3A-209ENST00000640289 SNCGO76070 127 aa7.63□□□□□ -1.19
GTF3A-209ENST00000640289 SCGB1C2P0DMR2 95 aa7.63□□□□□ -1.19
GTF3A-209ENST00000640289 HMCN2Q8NDA2 5059 aa7.6□□□□□ -1.19
GTF3A-209ENST00000640289 A0A0G2JQZ4 141 aa7.6□□□□□ -1.19
GTF3A-209ENST00000640289 OCIAD2Q56VL3 154 aa7.6□□□□□ -1.19
GTF3A-209ENST00000640289 C4orf48Q5BLP8 95 aa7.6□□□□□ -1.19
GTF3A-209ENST00000640289 SNHG12Q9BXW3 62 aa7.6□□□□□ -1.19
GTF3A-209ENST00000640289 PCP4L1A6NKN8 68 aa7.59□□□□□ -1.19
GTF3A-209ENST00000640289 SPAG11AQ6PDA7 123 aa7.59□□□□□ -1.19
GTF3A-209ENST00000640289 PPDPFLQ8WWR9 84 aa7.59□□□□□ -1.19
GTF3A-209ENST00000640289 F8WEM9 126 aa7.58□□□□□ -1.2
GTF3A-209ENST00000640289 LST1O00453 97 aa7.58□□□□□ -1.2
GTF3A-209ENST00000640289 DNAL4O96015 105 aa7.58□□□□□ -1.2
GTF3A-209ENST00000640289 HRCT1Q6UXD1 115 aa7.58□□□□□ -1.2
GTF3A-209ENST00000640289 H3BUT2 72 aa7.57□□□□□ -1.2
GTF3A-209ENST00000640289 TAX1BP3O14907 124 aa7.57□□□□□ -1.2
GTF3A-209ENST00000640289 TCL1BO95988 128 aa7.56□□□□□ -1.2
GTF3A-209ENST00000640289 SPINK1P00995 79 aa7.56□□□□□ -1.2
GTF3A-209ENST00000640289 TRACP01848 142 aa7.56□□□□□ -1.2
GTF3A-209ENST00000640289 FABP2P12104 132 aa7.56□□□□□ -1.2
GTF3A-209ENST00000640289 RETNLBQ9BQ08 111 aa7.56□□□□□ -1.2
GTF3A-209ENST00000640289 ORMDL1Q9P0S3 153 aa7.56□□□□□ -1.2
GTF3A-209ENST00000640289 IGLV8-61A0A075B6I0 122 aa7.54□□□□□ -1.2
GTF3A-209ENST00000640289 C9orf118A6NHY6 69 aa7.54□□□□□ -1.2
GTF3A-209ENST00000640289 NDUFV3P56181 108 aaKnown RBP7.54□□□□□ -1.2
GTF3A-209ENST00000640289 GHRHP01286 108 aa7.53□□□□□ -1.2
GTF3A-209ENST00000640289 RPS29P62273 56 aaKnown RBP7.52□□□□□ -1.21
GTF3A-209ENST00000640289 ATXN8Q156A1 80 aa7.52□□□□□ -1.21
GTF3A-209ENST00000640289 PRR4Q16378 134 aa7.52□□□□□ -1.21
GTF3A-209ENST00000640289 IGFL1Q6UW32 110 aa7.52□□□□□ -1.21
GTF3A-209ENST00000640289 Q6JHZ5 121 aa7.51□□□□□ -1.21
GTF3A-209ENST00000640289 A0A1B0GV72 72 aa7.5□□□□□ -1.21
GTF3A-209ENST00000640289 A0A1W2PPM0 123 aa7.5□□□□□ -1.21
GTF3A-209ENST00000640289 H3BMG7 143 aa7.5□□□□□ -1.21
GTF3A-209ENST00000640289 TMEM256-PLSCR3K7ERE1 68 aa7.5□□□□□ -1.21
GTF3A-209ENST00000640289 CD164Q04900 197 aa7.5□□□□□ -1.21
GTF3A-209ENST00000640289 LYRM7Q5U5X0 104 aa7.5□□□□□ -1.21
GTF3A-209ENST00000640289 COL5A1-AS1Q5SY13 56 aa7.49□□□□□ -1.21
GTF3A-209ENST00000640289 H3BQ85 93 aa7.48□□□□□ -1.21
GTF3A-209ENST00000640289 BAALC-AS2P0C853 105 aa7.48□□□□□ -1.21
GTF3A-209ENST00000640289 TRBV20-1A0A075B6N2 111 aa7.47□□□□□ -1.21
GTF3A-209ENST00000640289 UBE2V1Q13404 147 aa7.46□□□□□ -1.22
GTF3A-209ENST00000640289 LIMD2Q9BT23 127 aa7.46□□□□□ -1.22
GTF3A-209ENST00000640289 ANKRD29Q8N6D5 301 aa7.44□□□□□ -1.22
GTF3A-209ENST00000640289 IGLV7-46A0A075B6I9 117 aa7.43□□□□□ -1.22
GTF3A-209ENST00000640289 TRBV7-7A0A0K0K1E9 115 aa7.43□□□□□ -1.22
GTF3A-209ENST00000640289 C9JAW5 83 aa7.43□□□□□ -1.22
GTF3A-209ENST00000640289 Q5XG85 94 aa7.42□□□□□ -1.22
GTF3A-209ENST00000640289 MTURNQ8N3F0 131 aa7.42□□□□□ -1.22
GTF3A-209ENST00000640289 SPCS1Q9Y6A9 102 aa7.42□□□□□ -1.22
GTF3A-209ENST00000640289 LPAP08519 4548 aa7.42□□□□□ -1.22
GTF3A-209ENST00000640289 A0A1W2PNM2 257 aa7.41□□□□□ -1.22
GTF3A-209ENST00000640289 Q6Q795 121 aa7.41□□□□□ -1.22
GTF3A-209ENST00000640289 FP248Q71RG6 208 aaPredicted RBP7.41□□□□□ -1.22
GTF3A-209ENST00000640289 TEN1Q86WV5 123 aa7.4□□□□□ -1.22
GTF3A-209ENST00000640289 RBM3P98179 157 aaKnown RBP7.39□□□□□ -1.23
GTF3A-209ENST00000640289 TRBV7-4A0A0J9YYF1 115 aa7.38□□□□□ -1.23
GTF3A-209ENST00000640289 C1orf195Q5TG92 126 aa7.38□□□□□ -1.23
GTF3A-209ENST00000640289 LRP2P98164 4655 aa7.38□□□□□ -1.23
GTF3A-209ENST00000640289 A0A087WSZ3 146 aa7.37□□□□□ -1.23
GTF3A-209ENST00000640289 H3BT86 120 aa7.36□□□□□ -1.23
GTF3A-209ENST00000640289 K7EP34 96 aa7.36□□□□□ -1.23
GTF3A-209ENST00000640289 CCKP06307 115 aa7.36□□□□□ -1.23
GTF3A-209ENST00000640289 TPRXLQ17RH7 258 aa7.36□□□□□ -1.23
GTF3A-209ENST00000640289 DSCR8Q96T75 97 aa7.36□□□□□ -1.23
GTF3A-209ENST00000640289 UBR4Q5T4S7 5183 aa7.36□□□□□ -1.23
GTF3A-209ENST00000640289 VPS25Q9BRG1 176 aa7.35□□□□□ -1.23
GTF3A-209ENST00000640289 JMJD7-PLA2G4BH0Y9G9 81 aa7.34□□□□□ -1.23
GTF3A-209ENST00000640289 KRTAP13-3Q3SY46 172 aa7.34□□□□□ -1.23
GTF3A-209ENST00000640289 ASB16-AS1Q495Z4 193 aa7.34□□□□□ -1.23
GTF3A-209ENST00000640289 C14orf132Q9NPU4 83 aa7.33□□□□□ -1.24
GTF3A-209ENST00000640289 SS18L2Q9UHA2 77 aa7.33□□□□□ -1.24
GTF3A-209ENST00000640289 SMCPP49901 116 aaPredicted RBP7.32□□□□□ -1.24
GTF3A-209ENST00000640289 OBSCN-AS1Q96MR7 158 aa7.32□□□□□ -1.24
GTF3A-209ENST00000640289 Q6ZQT0 140 aa7.31□□□□□ -1.24
GTF3A-209ENST00000640289 CDIP1Q9H305 208 aa7.31□□□□□ -1.24
GTF3A-209ENST00000640289 PRO0461Q9UI25 63 aa7.31□□□□□ -1.24
GTF3A-209ENST00000640289 LOC110117498A0A087WWA1 95 aa7.3□□□□□ -1.24
GTF3A-209ENST00000640289 Q96NJ1 140 aa7.29□□□□□ -1.24
GTF3A-209ENST00000640289 C9orf92A6NGG3 77 aa7.28□□□□□ -1.24
GTF3A-209ENST00000640289 GTF2H5Q6ZYL4 71 aa7.28□□□□□ -1.24
GTF3A-209ENST00000640289 PDE6GP18545 87 aa7.26□□□□□ -1.25
GTF3A-209ENST00000640289 DEFB116Q30KQ4 102 aa7.24□□□□□ -1.25
GTF3A-209ENST00000640289 XP32Q5T750 250 aa7.24□□□□□ -1.25
GTF3A-209ENST00000640289 LINC00472Q9H8W2 130 aa7.22□□□□□ -1.25
GTF3A-209ENST00000640289 IGKV4-1P06312 121 aa7.21□□□□□ -1.26
GTF3A-209ENST00000640289 SIGMAR1Q99720 223 aa7.21□□□□□ -1.26
GTF3A-209ENST00000640289 RNF213Q63HN8 5207 aa7.21□□□□□ -1.26
GTF3A-209ENST00000640289 MUC17Q685J3 4493 aa7.2□□□□□ -1.26
GTF3A-209ENST00000640289 F8W1H4 67 aa7.2□□□□□ -1.26
GTF3A-209ENST00000640289 C21orf62-AS1Q17RA5 79 aa7.2□□□□□ -1.26
GTF3A-209ENST00000640289 A0A1B0GW54 56 aa7.19□□□□□ -1.26
GTF3A-209ENST00000640289 A0A1B0GV90 55 aa7.18□□□□□ -1.26
GTF3A-209ENST00000640289 ETDBQ3ZM63 59 aa7.16□□□□□ -1.26
GTF3A-209ENST00000640289 DSCR10P59022 87 aa7.14□□□□□ -1.27
GTF3A-209ENST00000640289 NREPQ16612 68 aa7.14□□□□□ -1.27
GTF3A-209ENST00000640289 IGHV6-1A0A0B4J1U7 121 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 147.2 ms