RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 DHRS4-AS1Q9P1J3 65 aa6.72□□□□□ -1.33
CUX1-221ENST00000622516 DNAH2Q9P225 4427 aa6.72□□□□□ -1.33
CUX1-221ENST00000622516 VPS13DQ5THJ4 4388 aa6.72□□□□□ -1.33
CUX1-221ENST00000622516 PDE6GP18545 87 aa6.72□□□□□ -1.33
CUX1-221ENST00000622516 FBN3Q75N90 2809 aa6.72□□□□□ -1.33
CUX1-221ENST00000622516 NUPR2A6NF83 97 aa6.71□□□□□ -1.34
CUX1-221ENST00000622516 HECTD4Q9Y4D8 3996 aa6.71□□□□□ -1.34
CUX1-221ENST00000622516 LRCOL1A6NCL2 159 aa6.71□□□□□ -1.34
CUX1-221ENST00000622516 PANO1I0J062 215 aa6.71□□□□□ -1.34
CUX1-221ENST00000622516 Q8N9L7 120 aa6.7□□□□□ -1.34
CUX1-221ENST00000622516 HIGD2AQ9BW72 106 aa6.7□□□□□ -1.34
CUX1-221ENST00000622516 H7BZZ5 65 aa6.69□□□□□ -1.34
CUX1-221ENST00000622516 FRAS1Q86XX4 4008 aa6.68□□□□□ -1.34
CUX1-221ENST00000622516 ATP5EP2Q5VTU8 51 aa6.68□□□□□ -1.34
CUX1-221ENST00000622516 RBM12B-AS1Q9P1G2 102 aa6.68□□□□□ -1.34
CUX1-221ENST00000622516 Q6ZRN7 208 aaPredicted RBP6.68□□□□□ -1.34
CUX1-221ENST00000622516 C9orf163Q8N9P6 203 aa6.67□□□□□ -1.34
CUX1-221ENST00000622516 IGLV5-48A0A075B6I7 105 aa6.66□□□□□ -1.34
CUX1-221ENST00000622516 C14orf177Q52M58 125 aa6.66□□□□□ -1.34
CUX1-221ENST00000622516 C1orf137Q5JT78 98 aa6.66□□□□□ -1.34
CUX1-221ENST00000622516 A0A1W2PNM2 257 aa6.66□□□□□ -1.34
CUX1-221ENST00000622516 NREPQ16612 68 aa6.66□□□□□ -1.34
CUX1-221ENST00000622516 PRR26Q8N8Z3 221 aa6.66□□□□□ -1.34
CUX1-221ENST00000622516 TRAV7A0A075B6U4 112 aa6.64□□□□□ -1.35
CUX1-221ENST00000622516 SMIM29Q86T20 159 aa6.64□□□□□ -1.35
CUX1-221ENST00000622516 TNP2Q05952 138 aa6.64□□□□□ -1.35
CUX1-221ENST00000622516 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.64□□□□□ -1.35
CUX1-221ENST00000622516 BPY2O14599 106 aa6.63□□□□□ -1.35
CUX1-221ENST00000622516 F8WEM9 126 aa6.63□□□□□ -1.35
CUX1-221ENST00000622516 MPLKIPQ8TAP9 179 aa6.63□□□□□ -1.35
CUX1-221ENST00000622516 SNURFQ9Y675 71 aa6.63□□□□□ -1.35
CUX1-221ENST00000622516 CXCL6P80162 114 aa6.63□□□□□ -1.35
CUX1-221ENST00000622516 KLKP1Q107X0 134 aa6.63□□□□□ -1.35
CUX1-221ENST00000622516 DNAH6Q9C0G6 4158 aa6.62□□□□□ -1.35
CUX1-221ENST00000622516 A0A0A0MQY5 61 aa6.62□□□□□ -1.35
CUX1-221ENST00000622516 LINC00476Q8WZB0 136 aa6.62□□□□□ -1.35
CUX1-221ENST00000622516 BCE1O60756 84 aa6.61□□□□□ -1.35
CUX1-221ENST00000622516 A0A087WTM6 91 aa6.6□□□□□ -1.35
CUX1-221ENST00000622516 DEFB116Q30KQ4 102 aa6.6□□□□□ -1.35
CUX1-221ENST00000622516 UBE2AP49459 152 aa6.6□□□□□ -1.35
CUX1-221ENST00000622516 Q8NBF4 154 aa6.6□□□□□ -1.35
CUX1-221ENST00000622516 LY6G6CO95867 125 aa6.59□□□□□ -1.35
CUX1-221ENST00000622516 IGFL1Q6UW32 110 aa6.59□□□□□ -1.35
CUX1-221ENST00000622516 ATP5EP56381 51 aaPredicted RBP6.58□□□□□ -1.36
CUX1-221ENST00000622516 NDUFC1O43677 76 aa6.58□□□□□ -1.36
CUX1-221ENST00000622516 DNAH8Q96JB1 4490 aa6.58□□□□□ -1.36
CUX1-221ENST00000622516 DNAH17Q9UFH2 4485 aa6.58□□□□□ -1.36
CUX1-221ENST00000622516 IGKV4-1P06312 121 aa6.57□□□□□ -1.36
CUX1-221ENST00000622516 KTN1-AS1Q86SY8 53 aa6.57□□□□□ -1.36
CUX1-221ENST00000622516 HYDINQ4G0P3 5121 aa6.57□□□□□ -1.36
CUX1-221ENST00000622516 RTL8CO15255 209 aa6.56□□□□□ -1.36
CUX1-221ENST00000622516 FAM229BQ4G0N7 80 aa6.56□□□□□ -1.36
CUX1-221ENST00000622516 SPACA4Q8TDM5 124 aa6.56□□□□□ -1.36
CUX1-221ENST00000622516 Q6ZR54 194 aa6.55□□□□□ -1.36
CUX1-221ENST00000622516 C8orf87E5RJ46 101 aa6.55□□□□□ -1.36
CUX1-221ENST00000622516 SPRR4Q96PI1 79 aa6.55□□□□□ -1.36
CUX1-221ENST00000622516 A0A087WSZ3 146 aa6.54□□□□□ -1.36
CUX1-221ENST00000622516 DNAH11Q96DT5 4516 aa6.53□□□□□ -1.36
CUX1-221ENST00000622516 K7EQZ3 153 aa6.52□□□□□ -1.37
CUX1-221ENST00000622516 DSCR10P59022 87 aa6.52□□□□□ -1.37
CUX1-221ENST00000622516 C1orf134Q5TEV5 83 aa6.52□□□□□ -1.37
CUX1-221ENST00000622516 ANAPC11Q9NYG5 84 aa6.51□□□□□ -1.37
CUX1-221ENST00000622516 DNAH5Q8TE73 4624 aa6.51□□□□□ -1.37
CUX1-221ENST00000622516 IGLV5-52A0A0A0MRZ9 124 aa6.51□□□□□ -1.37
CUX1-221ENST00000622516 IGLV9-49A0A0B4J1Y8 123 aa6.51□□□□□ -1.37
CUX1-221ENST00000622516 H0Y9J4 135 aa6.5□□□□□ -1.37
CUX1-221ENST00000622516 RPL37AP61513 92 aaKnown RBP6.5□□□□□ -1.37
CUX1-221ENST00000622516 KRTAP13-1Q8IUC0 172 aa6.5□□□□□ -1.37
CUX1-221ENST00000622516 PSORS1C2Q9UIG4 136 aa6.5□□□□□ -1.37
CUX1-221ENST00000622516 FAM30AQ9NZY2 134 aa6.48□□□□□ -1.37
CUX1-221ENST00000622516 IGLV8-61A0A075B6I0 122 aa6.48□□□□□ -1.37
CUX1-221ENST00000622516 TMEM254Q8TBM7 123 aa6.48□□□□□ -1.37
CUX1-221ENST00000622516 A0A1B0GW54 56 aa6.47□□□□□ -1.37
CUX1-221ENST00000622516 SPRR1BP22528 89 aa6.46□□□□□ -1.37
CUX1-221ENST00000622516 KRTAP10-2P60368 255 aa6.46□□□□□ -1.37
CUX1-221ENST00000622516 NDUFS5O43920 106 aa6.46□□□□□ -1.38
CUX1-221ENST00000622516 OCR1Q9BZK8 76 aa6.45□□□□□ -1.38
CUX1-221ENST00000622516 ALMS1Q8TCU4 4167 aa6.45□□□□□ -1.38
CUX1-221ENST00000622516 WFDC13Q8IUB5 93 aa6.45□□□□□ -1.38
CUX1-221ENST00000622516 Q1T7F1 81 aa6.44□□□□□ -1.38
CUX1-221ENST00000622516 PLAC8Q9NZF1 115 aa6.44□□□□□ -1.38
CUX1-221ENST00000622516 FAT2Q9NYQ8 4349 aa6.43□□□□□ -1.38
CUX1-221ENST00000622516 LRP1BQ9NZR2 4599 aa6.43□□□□□ -1.38
CUX1-221ENST00000622516 PKD1P98161 4303 aa6.42□□□□□ -1.38
CUX1-221ENST00000622516 MOBPQ13875 183 aa6.41□□□□□ -1.38
CUX1-221ENST00000622516 WWC2-AS2Q96NR7 200 aa6.41□□□□□ -1.38
CUX1-221ENST00000622516 HCG22E2RYF7 251 aa6.4□□□□□ -1.38
CUX1-221ENST00000622516 ZNF861PO60384 105 aa6.4□□□□□ -1.39
CUX1-221ENST00000622516 PKHD1P08F94 4074 aa6.4□□□□□ -1.39
CUX1-221ENST00000622516 CIRBP-AS1Q8TBR5 109 aa6.39□□□□□ -1.39
CUX1-221ENST00000622516 LINC00472Q9H8W2 130 aa6.39□□□□□ -1.39
CUX1-221ENST00000622516 A8MUN3 132 aa6.38□□□□□ -1.39
CUX1-221ENST00000622516 PSPHP1O15172 72 aa6.38□□□□□ -1.39
CUX1-221ENST00000622516 J3QL48 77 aa6.37□□□□□ -1.39
CUX1-221ENST00000622516 A8MU10 97 aa6.37□□□□□ -1.39
CUX1-221ENST00000622516 VPS13BQ7Z7G8 4022 aa6.37□□□□□ -1.39
CUX1-221ENST00000622516 LCA10Q71F78 164 aa6.36□□□□□ -1.39
CUX1-221ENST00000622516 LINC00483Q53H64 154 aa6.36□□□□□ -1.39
CUX1-221ENST00000622516 hDV103S1A0JD37 113 aa6.36□□□□□ -1.39
CUX1-221ENST00000622516 KRTAP10-1P60331 282 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms