RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 DMAC1Q96GE9 116 aa6.79□□□□□ -1.32
CLIP1-219ENST00000620786 BPTFQ12830 3046 aa6.79□□□□□ -1.32
CLIP1-219ENST00000620786 FP248Q71RG6 208 aaPredicted RBP6.78□□□□□ -1.32
CLIP1-219ENST00000620786 Q6ZR54 194 aa6.78□□□□□ -1.32
CLIP1-219ENST00000620786 LCA10Q71F78 164 aa6.78□□□□□ -1.32
CLIP1-219ENST00000620786 C5orf42Q9H799 3197 aa6.77□□□□□ -1.33
CLIP1-219ENST00000620786 PANO1I0J062 215 aa6.76□□□□□ -1.33
CLIP1-219ENST00000620786 ATRQ13535 2644 aa6.75□□□□□ -1.33
CLIP1-219ENST00000620786 BRCA2P51587 3418 aa6.75□□□□□ -1.33
CLIP1-219ENST00000620786 PRRC2CQ9Y520 2896 aaKnown RBP6.75□□□□□ -1.33
CLIP1-219ENST00000620786 MAST4O15021 2626 aa6.74□□□□□ -1.33
CLIP1-219ENST00000620786 CHD7Q9P2D1 2997 aa6.74□□□□□ -1.33
CLIP1-219ENST00000620786 CFAP46Q8IYW2 2715 aa6.73□□□□□ -1.33
CLIP1-219ENST00000620786 LAMA2P24043 3122 aaKnown RBP6.72□□□□□ -1.33
CLIP1-219ENST00000620786 Q75L30 129 aa6.71□□□□□ -1.33
CLIP1-219ENST00000620786 LINC01558Q9Y6Z2 57 aa6.69□□□□□ -1.34
CLIP1-219ENST00000620786 MKI67P46013 3256 aaKnown RBP6.69□□□□□ -1.34
CLIP1-219ENST00000620786 M0QZ58 72 aa6.69□□□□□ -1.34
CLIP1-219ENST00000620786 LAMA3Q16787 3333 aa6.69□□□□□ -1.34
CLIP1-219ENST00000620786 A0A087X002 238 aa6.68□□□□□ -1.34
CLIP1-219ENST00000620786 PLAC4Q8WY50 150 aa6.66□□□□□ -1.34
CLIP1-219ENST00000620786 ADM2Q7Z4H4 148 aa6.63□□□□□ -1.35
CLIP1-219ENST00000620786 CHD9Q3L8U1 2897 aa6.63□□□□□ -1.35
CLIP1-219ENST00000620786 KRTAP4-16G5E9R7 235 aaPredicted RBP6.61□□□□□ -1.35
CLIP1-219ENST00000620786 Q6ZRN7 208 aaPredicted RBP6.58□□□□□ -1.36
CLIP1-219ENST00000620786 KRTAP21-3Q3LHN1 58 aa6.58□□□□□ -1.36
CLIP1-219ENST00000620786 H1FX-AS1Q4G0G2 97 aa6.58□□□□□ -1.36
CLIP1-219ENST00000620786 RPL37P61927 97 aaKnown RBP6.57□□□□□ -1.36
CLIP1-219ENST00000620786 RPS29P62273 56 aaKnown RBP6.54□□□□□ -1.36
CLIP1-219ENST00000620786 KRTAP11-1Q8IUC1 163 aa6.54□□□□□ -1.36
CLIP1-219ENST00000620786 HTTP42858 3142 aa6.54□□□□□ -1.36
CLIP1-219ENST00000620786 Q5VV11 94 aa6.53□□□□□ -1.36
CLIP1-219ENST00000620786 CYSTM1Q9H1C7 97 aa6.52□□□□□ -1.36
CLIP1-219ENST00000620786 ROMO1P60602 79 aa6.52□□□□□ -1.37
CLIP1-219ENST00000620786 PRAC1Q96KF2 57 aa6.5□□□□□ -1.37
CLIP1-219ENST00000620786 TEX15Q9BXT5 2789 aa6.5□□□□□ -1.37
CLIP1-219ENST00000620786 SPATA8Q6RVD6 105 aa6.5□□□□□ -1.37
CLIP1-219ENST00000620786 NOTCH2NLQ7Z3S9 236 aa6.49□□□□□ -1.37
CLIP1-219ENST00000620786 BAHCC1Q9P281 2608 aa6.49□□□□□ -1.37
CLIP1-219ENST00000620786 H3BS24 57 aa6.48□□□□□ -1.37
CLIP1-219ENST00000620786 ASB16-AS1Q495Z4 193 aa6.48□□□□□ -1.37
CLIP1-219ENST00000620786 TEP1Q99973 2627 aaKnown RBP6.48□□□□□ -1.37
CLIP1-219ENST00000620786 MGAQ8IWI9 3026 aa6.47□□□□□ -1.37
CLIP1-219ENST00000620786 RANBP2P49792 3224 aaKnown RBP6.47□□□□□ -1.37
CLIP1-219ENST00000620786 A0A0C4DFX4 3053 aa6.47□□□□□ -1.37
CLIP1-219ENST00000620786 KRTAP29-1A8MX34 341 aaPredicted RBP6.47□□□□□ -1.37
CLIP1-219ENST00000620786 AKAP13Q12802 2813 aa6.46□□□□□ -1.37
CLIP1-219ENST00000620786 STAB1Q9NY15 2570 aa6.46□□□□□ -1.37
CLIP1-219ENST00000620786 KRTAP13-2Q52LG2 175 aa6.46□□□□□ -1.38
CLIP1-219ENST00000620786 Q5XG85 94 aa6.46□□□□□ -1.38
CLIP1-219ENST00000620786 TRANK1O15050 2925 aa6.45□□□□□ -1.38
CLIP1-219ENST00000620786 ZNF292O60281 2723 aa6.45□□□□□ -1.38
CLIP1-219ENST00000620786 CENPEQ02224 2701 aa6.44□□□□□ -1.38
CLIP1-219ENST00000620786 UNC80Q8N2C7 3258 aa6.43□□□□□ -1.38
CLIP1-219ENST00000620786 KRTAP7-1Q8IUC3 87 aa6.43□□□□□ -1.38
CLIP1-219ENST00000620786 C20orf166-AS1Q96NR2 134 aa6.42□□□□□ -1.38
CLIP1-219ENST00000620786 A8MUU9 505 aa6.41□□□□□ -1.38
CLIP1-219ENST00000620786 CDH23Q9H251 3354 aa6.41□□□□□ -1.38
CLIP1-219ENST00000620786 CHD6Q8TD26 2715 aa6.4□□□□□ -1.38
CLIP1-219ENST00000620786 PRUNE2Q8WUY3 3088 aa6.39□□□□□ -1.39
CLIP1-219ENST00000620786 COL6A5A8TX70 2615 aa6.39□□□□□ -1.39
CLIP1-219ENST00000620786 IGSF10Q6WRI0 2623 aa6.38□□□□□ -1.39
CLIP1-219ENST00000620786 KRTAP13-1Q8IUC0 172 aa6.37□□□□□ -1.39
CLIP1-219ENST00000620786 SETXQ7Z333 2677 aaKnown RBP6.37□□□□□ -1.39
CLIP1-219ENST00000620786 XIRP2A4UGR9 3374 aa6.36□□□□□ -1.39
CLIP1-219ENST00000620786 UNC79Q9P2D8 2635 aa6.36□□□□□ -1.39
CLIP1-219ENST00000620786 A0A0A0MQY5 61 aa6.36□□□□□ -1.39
CLIP1-219ENST00000620786 NBEAL1Q6ZS30 2694 aa6.36□□□□□ -1.39
CLIP1-219ENST00000620786 EYSQ5T1H1 3165 aa6.34□□□□□ -1.39
CLIP1-219ENST00000620786 CFAP54Q96N23 3096 aa6.33□□□□□ -1.4
CLIP1-219ENST00000620786 VCANP13611 3396 aa6.33□□□□□ -1.4
CLIP1-219ENST00000620786 GCN1Q92616 2671 aaKnown RBP6.3□□□□□ -1.4
CLIP1-219ENST00000620786 DSPP15924 2871 aaKnown RBP6.27□□□□□ -1.41
CLIP1-219ENST00000620786 A8MU10 97 aa6.27□□□□□ -1.41
CLIP1-219ENST00000620786 SZT2Q5T011 3432 aa6.27□□□□□ -1.41
CLIP1-219ENST00000620786 WDFY4Q6ZS81 3184 aa6.26□□□□□ -1.41
CLIP1-219ENST00000620786 ITPR2Q14571 2701 aa6.26□□□□□ -1.41
CLIP1-219ENST00000620786 NOTCH1P46531 2555 aa6.24□□□□□ -1.41
CLIP1-219ENST00000620786 TRIOO75962 3097 aa6.2□□□□□ -1.42
CLIP1-219ENST00000620786 FLG2Q5D862 2391 aaPredicted RBP6.2□□□□□ -1.42
CLIP1-219ENST00000620786 NBEAL2Q6ZNJ1 2754 aa6.19□□□□□ -1.42
CLIP1-219ENST00000620786 KMT2BQ9UMN6 2715 aaPredicted RBP6.18□□□□□ -1.42
CLIP1-219ENST00000620786 DMBT1Q9UGM3 2413 aaPredicted RBP6.17□□□□□ -1.42
CLIP1-219ENST00000620786 A0A1B0GVY2 172 aa6.17□□□□□ -1.42
CLIP1-219ENST00000620786 XP32Q5T750 250 aa6.17□□□□□ -1.42
CLIP1-219ENST00000620786 TNP1P09430 55 aa6.16□□□□□ -1.42
CLIP1-219ENST00000620786 SPEGQ15772 3267 aa6.16□□□□□ -1.42
CLIP1-219ENST00000620786 FRYQ5TBA9 3013 aa6.14□□□□□ -1.43
CLIP1-219ENST00000620786 NSD1Q96L73 2696 aaPredicted RBP6.14□□□□□ -1.43
CLIP1-219ENST00000620786 DNAH14Q0VDD8 3507 aa6.14□□□□□ -1.43
CLIP1-219ENST00000620786 USP34Q70CQ2 3546 aa6.13□□□□□ -1.43
CLIP1-219ENST00000620786 KRTAP1-4P0C5Y4 121 aa6.13□□□□□ -1.43
CLIP1-219ENST00000620786 UBR5O95071 2799 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-219ENST00000620786 MYO15AQ9UKN7 3530 aa6.13□□□□□ -1.43
CLIP1-219ENST00000620786 COL6A3P12111 3177 aa6.11□□□□□ -1.43
CLIP1-219ENST00000620786 VPS13AQ96RL7 3174 aa6.1□□□□□ -1.43
CLIP1-219ENST00000620786 KRTAP25-1Q3LHN0 102 aa6.09□□□□□ -1.43
CLIP1-219ENST00000620786 KRTAP10-8P60410 259 aa6.08□□□□□ -1.44
CLIP1-219ENST00000620786 TPRXLQ17RH7 258 aa6.07□□□□□ -1.44
CLIP1-219ENST00000620786 REV3LO60673 3130 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms