RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 IGLV8-61A0A075B6I0 122 aa12.23□□□□□ -0.45
CLIP3-206ENST00000593074 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.22□□□□□ -0.45
CLIP3-206ENST00000593074 RTL8CO15255 209 aa12.22□□□□□ -0.45
CLIP3-206ENST00000593074 BPY2O14599 106 aa12.21□□□□□ -0.45
CLIP3-206ENST00000593074 IGKV4-1P06312 121 aa12.2□□□□□ -0.46
CLIP3-206ENST00000593074 SPRR1BP22528 89 aa12.2□□□□□ -0.46
CLIP3-206ENST00000593074 KMT2AQ03164 3969 aa12.19□□□□□ -0.46
CLIP3-206ENST00000593074 UBE2AP49459 152 aa12.19□□□□□ -0.46
CLIP3-206ENST00000593074 IGFL1Q6UW32 110 aa12.19□□□□□ -0.46
CLIP3-206ENST00000593074 KRTAP13-1Q8IUC0 172 aa12.18□□□□□ -0.46
CLIP3-206ENST00000593074 SVIPQ8NHG7 77 aa12.18□□□□□ -0.46
CLIP3-206ENST00000593074 Q8N9L7 120 aa12.17□□□□□ -0.46
CLIP3-206ENST00000593074 DNAH2Q9P225 4427 aa12.17□□□□□ -0.46
CLIP3-206ENST00000593074 SMIM20Q8N5G0 67 aa12.17□□□□□ -0.46
CLIP3-206ENST00000593074 TRAV7A0A075B6U4 112 aa12.16□□□□□ -0.46
CLIP3-206ENST00000593074 HECTD4Q9Y4D8 3996 aa12.16□□□□□ -0.46
CLIP3-206ENST00000593074 CYSTM1Q9H1C7 97 aa12.15□□□□□ -0.46
CLIP3-206ENST00000593074 IGLV5-52A0A0A0MRZ9 124 aa12.14□□□□□ -0.47
CLIP3-206ENST00000593074 DNAH17Q9UFH2 4485 aa12.12□□□□□ -0.47
CLIP3-206ENST00000593074 A0A0G2JQZ4 141 aa12.12□□□□□ -0.47
CLIP3-206ENST00000593074 TGP01266 2768 aa12.09□□□□□ -0.47
CLIP3-206ENST00000593074 PLAC8Q9NZF1 115 aa12.08□□□□□ -0.48
CLIP3-206ENST00000593074 SRRM2Q9UQ35 2752 aaKnown RBP12.08□□□□□ -0.48
CLIP3-206ENST00000593074 DNAH6Q9C0G6 4158 aa12.06□□□□□ -0.48
CLIP3-206ENST00000593074 DSCR10P59022 87 aa12.06□□□□□ -0.48
CLIP3-206ENST00000593074 C20orf197Q8N268 126 aa12.04□□□□□ -0.48
CLIP3-206ENST00000593074 A0A087WSZ3 146 aa12.03□□□□□ -0.48
CLIP3-206ENST00000593074 TMEM258P61165 79 aa12.02□□□□□ -0.48
CLIP3-206ENST00000593074 PSORS1C2Q9UIG4 136 aa12.01□□□□□ -0.49
CLIP3-206ENST00000593074 K7EQZ3 153 aa11.99□□□□□ -0.49
CLIP3-206ENST00000593074 KLKP1Q107X0 134 aa11.99□□□□□ -0.49
CLIP3-206ENST00000593074 LINC00483Q53H64 154 aa11.99□□□□□ -0.49
CLIP3-206ENST00000593074 OCR1Q9BZK8 76 aa11.99□□□□□ -0.49
CLIP3-206ENST00000593074 DNAH8Q96JB1 4490 aa11.96□□□□□ -0.49
CLIP3-206ENST00000593074 KRTAP10-2P60368 255 aa11.96□□□□□ -0.5
CLIP3-206ENST00000593074 ALMS1Q8TCU4 4167 aa11.95□□□□□ -0.5
CLIP3-206ENST00000593074 ZNF706Q9Y5V0 76 aaPredicted RBP11.95□□□□□ -0.5
CLIP3-206ENST00000593074 DEFB116Q30KQ4 102 aa11.92□□□□□ -0.5
CLIP3-206ENST00000593074 ZNF861PO60384 105 aa11.91□□□□□ -0.5
CLIP3-206ENST00000593074 FRAS1Q86XX4 4008 aa11.91□□□□□ -0.5
CLIP3-206ENST00000593074 H7BZZ5 65 aa11.91□□□□□ -0.5
CLIP3-206ENST00000593074 RPL37AP61513 92 aaKnown RBP11.9□□□□□ -0.5
CLIP3-206ENST00000593074 SNURFQ9Y675 71 aa11.9□□□□□ -0.5
CLIP3-206ENST00000593074 IGLV9-49A0A0B4J1Y8 123 aa11.89□□□□□ -0.51
CLIP3-206ENST00000593074 TMEM254Q8TBM7 123 aa11.89□□□□□ -0.51
CLIP3-206ENST00000593074 HCG22E2RYF7 251 aa11.88□□□□□ -0.51
CLIP3-206ENST00000593074 LINC00472Q9H8W2 130 aa11.88□□□□□ -0.51
CLIP3-206ENST00000593074 FAM30AQ9NZY2 134 aa11.88□□□□□ -0.51
CLIP3-206ENST00000593074 DNAH11Q96DT5 4516 aa11.86□□□□□ -0.51
CLIP3-206ENST00000593074 CIRBP-AS1Q8TBR5 109 aa11.85□□□□□ -0.51
CLIP3-206ENST00000593074 DNAH5Q8TE73 4624 aa11.85□□□□□ -0.51
CLIP3-206ENST00000593074 NDUFC1O43677 76 aa11.84□□□□□ -0.51
CLIP3-206ENST00000593074 J3KT08 172 aa11.83□□□□□ -0.51
CLIP3-206ENST00000593074 RPS28P62857 69 aaKnown RBP11.83□□□□□ -0.51
CLIP3-206ENST00000593074 LCE6AA0A183 80 aa11.83□□□□□ -0.52
CLIP3-206ENST00000593074 IGLV7-43P04211 117 aa11.83□□□□□ -0.52
CLIP3-206ENST00000593074 A0A0U1RQV1 116 aa11.82□□□□□ -0.52
CLIP3-206ENST00000593074 A8MWP4 228 aa11.82□□□□□ -0.52
CLIP3-206ENST00000593074 KRTAP10-1P60331 282 aa11.82□□□□□ -0.52
CLIP3-206ENST00000593074 PRR15Q8IV56 129 aa11.81□□□□□ -0.52
CLIP3-206ENST00000593074 FAM236DA0A1B0GTK5 79 aa11.8□□□□□ -0.52
CLIP3-206ENST00000593074 FAM236CP0DP71 79 aa11.8□□□□□ -0.52
CLIP3-206ENST00000593074 MOBPQ13875 183 aa11.8□□□□□ -0.52
CLIP3-206ENST00000593074 Q6ZSA8 131 aa11.8□□□□□ -0.52
CLIP3-206ENST00000593074 ANAPC11Q9NYG5 84 aa11.78□□□□□ -0.52
CLIP3-206ENST00000593074 KRTAP29-1A8MX34 341 aaPredicted RBP11.77□□□□□ -0.52
CLIP3-206ENST00000593074 FAT2Q9NYQ8 4349 aa11.77□□□□□ -0.53
CLIP3-206ENST00000593074 Q96NJ1 140 aa11.77□□□□□ -0.53
CLIP3-206ENST00000593074 WFDC13Q8IUB5 93 aa11.76□□□□□ -0.53
CLIP3-206ENST00000593074 PKD1P98161 4303 aa11.75□□□□□ -0.53
CLIP3-206ENST00000593074 HYDINQ4G0P3 5121 aa11.75□□□□□ -0.53
CLIP3-206ENST00000593074 HRCT1Q6UXD1 115 aa11.72□□□□□ -0.53
CLIP3-206ENST00000593074 CASC2Q6XLA1 102 aa11.71□□□□□ -0.53
CLIP3-206ENST00000593074 C5orf47Q569G3 176 aa11.7□□□□□ -0.54
CLIP3-206ENST00000593074 OXTP01178 125 aa11.69□□□□□ -0.54
CLIP3-206ENST00000593074 ATP5EP56381 51 aaPredicted RBP11.68□□□□□ -0.54
CLIP3-206ENST00000593074 NDUFB1O75438 58 aa11.67□□□□□ -0.54
CLIP3-206ENST00000593074 ZCCHC13Q8WW36 166 aaKnown RBP11.67□□□□□ -0.54
CLIP3-206ENST00000593074 MMP24-AS1A0A0U1RRL7 71 aa11.67□□□□□ -0.54
CLIP3-206ENST00000593074 LINC00336Q6ZUF6 198 aa11.66□□□□□ -0.54
CLIP3-206ENST00000593074 SERP1Q9Y6X1 66 aa11.64□□□□□ -0.55
CLIP3-206ENST00000593074 LRP1BQ9NZR2 4599 aa11.6□□□□□ -0.55
CLIP3-206ENST00000593074 CD164Q04900 197 aa11.6□□□□□ -0.55
CLIP3-206ENST00000593074 ASB16-AS1Q495Z4 193 aa11.6□□□□□ -0.55
CLIP3-206ENST00000593074 hDV103S1A0JD37 113 aa11.59□□□□□ -0.55
CLIP3-206ENST00000593074 SSBP3-AS1Q7Z2R9 100 aa11.59□□□□□ -0.55
CLIP3-206ENST00000593074 SACSQ9NZJ4 4579 aa11.58□□□□□ -0.56
CLIP3-206ENST00000593074 A0A1B0GVX0 72 aa11.57□□□□□ -0.56
CLIP3-206ENST00000593074 MP68P56378 58 aa11.56□□□□□ -0.56
CLIP3-206ENST00000593074 C8orf17Q9NRJ1 99 aa11.56□□□□□ -0.56
CLIP3-206ENST00000593074 A0A087X002 238 aa11.53□□□□□ -0.56
CLIP3-206ENST00000593074 CDK2AP2O75956 126 aa11.53□□□□□ -0.56
CLIP3-206ENST00000593074 FAM229BQ4G0N7 80 aa11.53□□□□□ -0.56
CLIP3-206ENST00000593074 IGHV6-1A0A0B4J1U7 121 aa11.52□□□□□ -0.57
CLIP3-206ENST00000593074 H0Y9P7 68 aa11.52□□□□□ -0.57
CLIP3-206ENST00000593074 H3BPC8 53 aa11.52□□□□□ -0.57
CLIP3-206ENST00000593074 KRTAP13-2Q52LG2 175 aa11.51□□□□□ -0.57
CLIP3-206ENST00000593074 A0A1B0GVY2 172 aa11.5□□□□□ -0.57
CLIP3-206ENST00000593074 LINC00208Q96KT6 92 aa11.5□□□□□ -0.57
CLIP3-206ENST00000593074 TRAV22A0A0B4J277 110 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 160.5 ms