RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 LINC01546A6NGU7 62 aa2.39□□□□□ -2.03
NUP88-213ENST00000576862 HCG22E2RYF7 251 aa2.39□□□□□ -2.03
NUP88-213ENST00000576862 H7BZZ5 65 aa2.39□□□□□ -2.03
NUP88-213ENST00000576862 ERC2-IT1O76042 136 aa2.39□□□□□ -2.03
NUP88-213ENST00000576862 SMIM13P0DJ93 91 aa2.39□□□□□ -2.03
NUP88-213ENST00000576862 IFI27P40305 119 aaPredicted RBP2.39□□□□□ -2.03
NUP88-213ENST00000576862 WFDC10AQ9H1F0 79 aa2.39□□□□□ -2.03
NUP88-213ENST00000576862 HIGD1BQ9P298 99 aa2.39□□□□□ -2.03
NUP88-213ENST00000576862 ZNF469Q96JG9 3925 aaPredicted RBP2.38□□□□□ -2.03
NUP88-213ENST00000576862 C3orf79P0CE67 100 aa2.38□□□□□ -2.03
NUP88-213ENST00000576862 MIR22HGQ0VDD5 57 aa2.38□□□□□ -2.03
NUP88-213ENST00000576862 TMEM170BQ5T4T1 132 aa2.38□□□□□ -2.03
NUP88-213ENST00000576862 RPL39LQ96EH5 51 aaKnown RBP2.38□□□□□ -2.03
NUP88-213ENST00000576862 C22orf24Q9Y442 160 aa2.38□□□□□ -2.03
NUP88-213ENST00000576862 VWFP04275 2813 aa2.38□□□□□ -2.03
NUP88-213ENST00000576862 TRAV10A0A0B4J240 114 aa2.37□□□□□ -2.03
NUP88-213ENST00000576862 MGPP08493 103 aa2.37□□□□□ -2.03
NUP88-213ENST00000576862 HTN1P15515 57 aa2.37□□□□□ -2.03
NUP88-213ENST00000576862 C2orf82Q6UX34 121 aa2.37□□□□□ -2.03
NUP88-213ENST00000576862 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.37□□□□□ -2.03
NUP88-213ENST00000576862 SMIM2Q9BVW6 85 aa2.37□□□□□ -2.03
NUP88-213ENST00000576862 CYSTM1Q9H1C7 97 aa2.37□□□□□ -2.03
NUP88-213ENST00000576862 COL6A5A8TX70 2615 aa2.37□□□□□ -2.03
NUP88-213ENST00000576862 TRBV7-3A0A075B6L6 115 aa2.36□□□□□ -2.03
NUP88-213ENST00000576862 M0QY20 66 aa2.36□□□□□ -2.03
NUP88-213ENST00000576862 LEPROTL1O95214 131 aa2.36□□□□□ -2.03
NUP88-213ENST00000576862 KRTAP12-3P60328 96 aa2.36□□□□□ -2.03
NUP88-213ENST00000576862 UBE2D3P61077 147 aa2.36□□□□□ -2.03
NUP88-213ENST00000576862 UBE2D2P62837 147 aa2.36□□□□□ -2.03
NUP88-213ENST00000576862 KRTAP6-3Q3LI67 103 aa2.36□□□□□ -2.03
NUP88-213ENST00000576862 DEFB121Q5J5C9 76 aa2.36□□□□□ -2.03
NUP88-213ENST00000576862 FAM74A4Q5TZK3 123 aa2.36□□□□□ -2.03
NUP88-213ENST00000576862 KRTAP26-1Q6PEX3 210 aa2.36□□□□□ -2.03
NUP88-213ENST00000576862 SPINT4Q6UDR6 99 aa2.36□□□□□ -2.03
NUP88-213ENST00000576862 LIMD2Q9BT23 127 aa2.36□□□□□ -2.03
NUP88-213ENST00000576862 PRO1854Q9UHT4 67 aa2.36□□□□□ -2.03
NUP88-213ENST00000576862 MGAM2Q2M2H8 2515 aa2.35□□□□□ -2.03
NUP88-213ENST00000576862 TRAV12-1A0A0B4J245 112 aa2.35□□□□□ -2.03
NUP88-213ENST00000576862 TRBV6-5A0A0K0K1A5 114 aa2.35□□□□□ -2.03
NUP88-213ENST00000576862 PSCAO43653 123 aa2.35□□□□□ -2.03
NUP88-213ENST00000576862 KRTAP5-8O75690 187 aa2.35□□□□□ -2.03
NUP88-213ENST00000576862 IGHV3-33P01772 117 aa2.35□□□□□ -2.03
NUP88-213ENST00000576862 P0C880 135 aa2.35□□□□□ -2.03
NUP88-213ENST00000576862 FCER1GP30273 86 aa2.35□□□□□ -2.03
NUP88-213ENST00000576862 POLR2KP53803 58 aaKnown RBP2.35□□□□□ -2.03
NUP88-213ENST00000576862 ZNF56Q15929 161 aa2.35□□□□□ -2.03
NUP88-213ENST00000576862 WFDC9Q8NEX5 89 aa2.35□□□□□ -2.03
NUP88-213ENST00000576862 SPTSSBQ8NFR3 76 aa2.35□□□□□ -2.03
NUP88-213ENST00000576862 DEFB104AQ8WTQ1 72 aa2.35□□□□□ -2.03
NUP88-213ENST00000576862 PSORS1C2Q9UIG4 136 aa2.35□□□□□ -2.03
NUP88-213ENST00000576862 TRAV23DV6A0A075B6W5 121 aa2.34□□□□□ -2.03
NUP88-213ENST00000576862 TRGV1A0A0A0MS02 117 aa2.34□□□□□ -2.03
NUP88-213ENST00000576862 SDHAF1A6NFY7 115 aa2.34□□□□□ -2.03
NUP88-213ENST00000576862 PPP1R17O96001 155 aa2.34□□□□□ -2.03
NUP88-213ENST00000576862 COX6CP09669 75 aa2.34□□□□□ -2.03
NUP88-213ENST00000576862 KRTAP12-4P60329 112 aa2.34□□□□□ -2.03
NUP88-213ENST00000576862 Q6ZTI0 123 aa2.34□□□□□ -2.03
NUP88-213ENST00000576862 TMEM263Q8WUH6 116 aaKnown RBP2.34□□□□□ -2.03
NUP88-213ENST00000576862 IFI27L1Q96BM0 104 aa2.34□□□□□ -2.03
NUP88-213ENST00000576862 HIGD2AQ9BW72 106 aa2.34□□□□□ -2.03
NUP88-213ENST00000576862 NOP10Q9NPE3 64 aaKnown RBP2.34□□□□□ -2.03
NUP88-213ENST00000576862 SORL1Q92673 2214 aa2.34□□□□□ -2.04
NUP88-213ENST00000576862 NOTCH1P46531 2555 aa2.34□□□□□ -2.04
NUP88-213ENST00000576862 FBN1P35555 2871 aaKnown RBP2.33□□□□□ -2.04
NUP88-213ENST00000576862 TRBV25-1A0A075B6N4 114 aa2.33□□□□□ -2.04
NUP88-213ENST00000576862 TRAV22A0A0B4J277 110 aa2.33□□□□□ -2.04
NUP88-213ENST00000576862 NBEAL1Q6ZS30 2694 aa2.32□□□□□ -2.04
NUP88-213ENST00000576862 A0A1W2PNM2 257 aa2.32□□□□□ -2.04
NUP88-213ENST00000576862 IGIPA6NJ69 53 aa2.32□□□□□ -2.04
NUP88-213ENST00000576862 I3L3M4 83 aa2.32□□□□□ -2.04
NUP88-213ENST00000576862 K7EMI3 77 aa2.32□□□□□ -2.04
NUP88-213ENST00000576862 RPL39P62891 51 aaKnown RBP2.32□□□□□ -2.04
NUP88-213ENST00000576862 DEFB135Q30KP9 77 aa2.32□□□□□ -2.04
NUP88-213ENST00000576862 KRTAP25-1Q3LHN0 102 aa2.32□□□□□ -2.04
NUP88-213ENST00000576862 Q9BRP9 147 aa2.32□□□□□ -2.04
NUP88-213ENST00000576862 CUBNO60494 3623 aa2.32□□□□□ -2.04
NUP88-213ENST00000576862 MUC4Q99102 2169 aa2.32□□□□□ -2.04
NUP88-213ENST00000576862 NBEAL2Q6ZNJ1 2754 aa2.31□□□□□ -2.04
NUP88-213ENST00000576862 ZFHX3Q15911 3703 aa2.31□□□□□ -2.04
NUP88-213ENST00000576862 TRGV2A0A075B6R0 118 aa2.31□□□□□ -2.04
NUP88-213ENST00000576862 IGKV2-24A0A0C4DH68 120 aa2.31□□□□□ -2.04
NUP88-213ENST00000576862 TRBV10-1A0A0K0K1A3 114 aa2.31□□□□□ -2.04
NUP88-213ENST00000576862 DEFB4AO15263 64 aa2.31□□□□□ -2.04
NUP88-213ENST00000576862 DEFB130BP0DP73 79 aa2.31□□□□□ -2.04
NUP88-213ENST00000576862 DEFB130AP0DP74 79 aa2.31□□□□□ -2.04
NUP88-213ENST00000576862 COX8AP10176 69 aa2.31□□□□□ -2.04
NUP88-213ENST00000576862 CNBPP62633 177 aaKnown RBP2.31□□□□□ -2.04
NUP88-213ENST00000576862 Q5VV11 94 aa2.31□□□□□ -2.04
NUP88-213ENST00000576862 C9orf163Q8N9P6 203 aa2.31□□□□□ -2.04
NUP88-213ENST00000576862 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.3□□□□□ -2.04
NUP88-213ENST00000576862 LOC101927531A0A1B0GV80 90 aa2.3□□□□□ -2.04
NUP88-213ENST00000576862 TRBV6-4A0A1B0GX49 114 aa2.3□□□□□ -2.04
NUP88-213ENST00000576862 IGKV2-29A2NJV5 120 aaPredicted RBP2.3□□□□□ -2.04
NUP88-213ENST00000576862 F8VRH5 84 aa2.3□□□□□ -2.04
NUP88-213ENST00000576862 PLNP26678 52 aa2.3□□□□□ -2.04
NUP88-213ENST00000576862 UBE2D1P51668 147 aa2.3□□□□□ -2.04
NUP88-213ENST00000576862 C1orf137Q5JT78 98 aa2.3□□□□□ -2.04
NUP88-213ENST00000576862 CDC42SE2Q9NRR3 84 aa2.3□□□□□ -2.04
NUP88-213ENST00000576862 PKD1L1Q8TDX9 2849 aa2.29□□□□□ -2.04
NUP88-213ENST00000576862 TRGV4A0A0C4DH28 118 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms