RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 ALMS1Q8TCU4 4167 aa0.31□□□□□ -2.36
SCFD1-208ENST00000553278 HMCN2Q8NDA2 5059 aa0.3□□□□□ -2.36
SCFD1-208ENST00000553278 H0YAA0 97 aa0.3□□□□□ -2.36
SCFD1-208ENST00000553278 ABCA9Q8IUA7 1624 aa0.3□□□□□ -2.36
SCFD1-208ENST00000553278 FLNBO75369 2602 aaKnown RBP0.29□□□□□ -2.36
SCFD1-208ENST00000553278 AKAP13Q12802 2813 aa0.29□□□□□ -2.36
SCFD1-208ENST00000553278 NSD1Q96L73 2696 aaPredicted RBP0.29□□□□□ -2.36
SCFD1-208ENST00000553278 ACANP16112 2415 aa0.28□□□□□ -2.36
SCFD1-208ENST00000553278 NHSQ6T4R5 1651 aa0.28□□□□□ -2.36
SCFD1-208ENST00000553278 SYNE2Q8WXH0 6885 aaKnown RBP0.28□□□□□ -2.36
SCFD1-208ENST00000553278 ZC3H13Q5T200 1668 aaKnown RBP0.27□□□□□ -2.37
SCFD1-208ENST00000553278 H0YGG7 62 aa0.27□□□□□ -2.37
SCFD1-208ENST00000553278 DNMBPQ6XZF7 1577 aa0.27□□□□□ -2.37
SCFD1-208ENST00000553278 RNF17Q9BXT8 1623 aaKnown RBP0.27□□□□□ -2.37
SCFD1-208ENST00000553278 LYNX1G3V0Z9 82 aa0.26□□□□□ -2.37
SCFD1-208ENST00000553278 KMT2DO14686 5537 aa0.25□□□□□ -2.37
SCFD1-208ENST00000553278 HECTD1Q9ULT8 2610 aa0.25□□□□□ -2.37
SCFD1-208ENST00000553278 SPRR2BP35325 72 aa0.24□□□□□ -2.37
SCFD1-208ENST00000553278 DSPP15924 2871 aaKnown RBP0.24□□□□□ -2.37
SCFD1-208ENST00000553278 PCNX1Q96RV3 2341 aa0.24□□□□□ -2.37
SCFD1-208ENST00000553278 ETDCA0A1B0GVM5 59 aa0.23□□□□□ -2.37
SCFD1-208ENST00000553278 HSPG2P98160 4391 aa0.23□□□□□ -2.37
SCFD1-208ENST00000553278 EFCAB5A4FU69 1503 aa0.22□□□□□ -2.37
SCFD1-208ENST00000553278 MROH1Q8NDA8 1641 aa0.21□□□□□ -2.38
SCFD1-208ENST00000553278 BPTFQ12830 3046 aa0.21□□□□□ -2.38
SCFD1-208ENST00000553278 SPRR2GQ9BYE4 73 aa0.21□□□□□ -2.38
SCFD1-208ENST00000553278 FSIP2Q5CZC0 6907 aa0.21□□□□□ -2.38
SCFD1-208ENST00000553278 CRIP1P50238 77 aa0.2□□□□□ -2.38
SCFD1-208ENST00000553278 MACF1Q9UPN3 7388 aaKnown RBP0.2□□□□□ -2.38
SCFD1-208ENST00000553278 TENM2Q9NT68 2774 aa0.2□□□□□ -2.38
SCFD1-208ENST00000553278 CREBBPQ92793 2442 aa0.19□□□□□ -2.38
SCFD1-208ENST00000553278 NBASA2RRP1 2371 aa0.19□□□□□ -2.38
SCFD1-208ENST00000553278 HECTD4Q9Y4D8 3996 aa0.19□□□□□ -2.38
SCFD1-208ENST00000553278 IAPPP10997 89 aa0.19□□□□□ -2.38
SCFD1-208ENST00000553278 PRRC2CQ9Y520 2896 aaKnown RBP0.19□□□□□ -2.38
SCFD1-208ENST00000553278 INO80Q9ULG1 1556 aaPredicted RBP0.19□□□□□ -2.38
SCFD1-208ENST00000553278 MADDQ8WXG6 1647 aa0.18□□□□□ -2.38
SCFD1-208ENST00000553278 DEFB130BP0DP73 79 aa0.17□□□□□ -2.38
SCFD1-208ENST00000553278 DEFB130AP0DP74 79 aa0.17□□□□□ -2.38
SCFD1-208ENST00000553278 DEFB114Q30KQ6 69 aa0.17□□□□□ -2.38
SCFD1-208ENST00000553278 COL6A3P12111 3177 aa0.16□□□□□ -2.38
SCFD1-208ENST00000553278 KIAA0586Q9BVV6 1533 aa0.16□□□□□ -2.38
SCFD1-208ENST00000553278 ZANQ9Y493 2812 aa0.16□□□□□ -2.38
SCFD1-208ENST00000553278 TNRC18O15417 2968 aaPredicted RBP0.14□□□□□ -2.39
SCFD1-208ENST00000553278 A0A087WWC5 75 aa0.13□□□□□ -2.39
SCFD1-208ENST00000553278 C3P01024 1663 aa0.12□□□□□ -2.39
SCFD1-208ENST00000553278 MAP1AP78559 2803 aaPredicted RBP0.12□□□□□ -2.39
SCFD1-208ENST00000553278 LRP2P98164 4655 aa0.11□□□□□ -2.39
SCFD1-208ENST00000553278 SMIM31A0A1B0GVY4 71 aa0.1□□□□□ -2.39
SCFD1-208ENST00000553278 LINC01549A6NIU2 74 aa0.1□□□□□ -2.39
SCFD1-208ENST00000553278 CCDC180Q9P1Z9 1646 aa0.09□□□□□ -2.4
SCFD1-208ENST00000553278 ABCC6O95255 1503 aa0.08□□□□□ -2.4
SCFD1-208ENST00000553278 NF1P21359 2839 aa0.06□□□□□ -2.4
SCFD1-208ENST00000553278 PRLHP81277 87 aa0.04□□□□□ -2.4
SCFD1-208ENST00000553278 MINOS1Q5TGZ0 78 aa0.04□□□□□ -2.4
SCFD1-208ENST00000553278 STAB1Q9NY15 2570 aa0.04□□□□□ -2.4
SCFD1-208ENST00000553278 SSPOA2VEC9 5147 aa0.03□□□□□ -2.4
SCFD1-208ENST00000553278 SPTBN4Q9H254 2564 aa0.03□□□□□ -2.4
SCFD1-208ENST00000553278 LRP1BQ9NZR2 4599 aa0.02□□□□□ -2.41
SCFD1-208ENST00000553278 STAB2Q8WWQ8 2551 aa0.01□□□□□ -2.41
SCFD1-208ENST00000553278 ABCA6Q8N139 1617 aa0.01□□□□□ -2.41
SCFD1-208ENST00000553278 CEP290O15078 2479 aa0.01□□□□□ -2.41
SCFD1-208ENST00000553278 SETD2Q9BYW2 2564 aaPredicted RBP0□□□□□ -2.41
SCFD1-208ENST00000553278 NBEAL1Q6ZS30 2694 aa0□□□□□ -2.41
SCFD1-208ENST00000553278 LYSTQ99698 3801 aa0□□□□□ -2.41
SCFD1-208ENST00000553278 K7EMI3 77 aa0□□□□□ -2.41
SCFD1-208ENST00000553278 S100ZQ8WXG8 99 aa0□□□□□ -2.41
SCFD1-208ENST00000553278 ITSN2Q9NZM3 1697 aa0□□□□□ -2.41
SCFD1-208ENST00000553278 ZZEF1O43149 2961 aa-0□□□□□ -2.41
SCFD1-208ENST00000553278 PKD1P98161 4303 aa-0.01□□□□□ -2.41
SCFD1-208ENST00000553278 SPRR2AP35326 72 aa-0.02□□□□□ -2.41
SCFD1-208ENST00000553278 NCBP2-AS2Q69YL0 99 aa-0.02□□□□□ -2.41
SCFD1-208ENST00000553278 PKHD1P08F94 4074 aa-0.03□□□□□ -2.41
SCFD1-208ENST00000553278 ERICH3Q5RHP9 1530 aa-0.03□□□□□ -2.41
SCFD1-208ENST00000553278 KRTAP6-1Q3LI64 71 aa-0.03□□□□□ -2.41
SCFD1-208ENST00000553278 DEFB106AQ8N104 65 aa-0.03□□□□□ -2.41
SCFD1-208ENST00000553278 S4R3F8 94 aa-0.04□□□□□ -2.42
SCFD1-208ENST00000553278 PKD1L2Q7Z442 2459 aa-0.05□□□□□ -2.42
SCFD1-208ENST00000553278 C9orf92A6NGG3 77 aa-0.05□□□□□ -2.42
SCFD1-208ENST00000553278 WT1-ASQ06250 92 aa-0.05□□□□□ -2.42
SCFD1-208ENST00000553278 C6orf48Q9UBA6 75 aa-0.05□□□□□ -2.42
SCFD1-208ENST00000553278 ANKRD36CQ5JPF3 1778 aa-0.05□□□□□ -2.42
SCFD1-208ENST00000553278 SPG11Q96JI7 2443 aa-0.05□□□□□ -2.42
SCFD1-208ENST00000553278 KIF1AQ12756 1690 aa-0.05□□□□□ -2.42
SCFD1-208ENST00000553278 H3BNG1 76 aa-0.06□□□□□ -2.42
SCFD1-208ENST00000553278 TGP01266 2768 aa-0.07□□□□□ -2.42
SCFD1-208ENST00000553278 RPS27P42677 84 aaKnown RBP-0.07□□□□□ -2.42
SCFD1-208ENST00000553278 RPS27LQ71UM5 84 aaKnown RBP-0.07□□□□□ -2.42
SCFD1-208ENST00000553278 SFTA3P0C7M3 94 aa-0.08□□□□□ -2.42
SCFD1-208ENST00000553278 SERF2P84101 59 aa-0.08□□□□□ -2.42
SCFD1-208ENST00000553278 KRTAP6-2Q3LI66 62 aa-0.08□□□□□ -2.42
SCFD1-208ENST00000553278 KRTAP19-7Q3SYF9 63 aa-0.08□□□□□ -2.42
SCFD1-208ENST00000553278 SMIM5Q71RC9 77 aa-0.08□□□□□ -2.42
SCFD1-208ENST00000553278 SONP18583 2426 aaKnown RBP-0.08□□□□□ -2.42
SCFD1-208ENST00000553278 LY75O60449 1722 aa-0.09□□□□□ -2.42
SCFD1-208ENST00000553278 FCER1GP30273 86 aa-0.09□□□□□ -2.42
SCFD1-208ENST00000553278 TIAM1Q13009 1591 aa-0.1□□□□□ -2.42
SCFD1-208ENST00000553278 PDZD2O15018 2839 aa-0.1□□□□□ -2.43
SCFD1-208ENST00000553278 M0R1W7 72 aa-0.1□□□□□ -2.43
SCFD1-208ENST00000553278 NMES1Q9C002 83 aa-0.1□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms