RNA–Protein interactions for RNA: ENST00000547247.5

SMARCD1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 1 (best)

Gene SMARCD1, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-203ENST00000547247 SSBP3-AS1Q7Z2R9 100 aa13.54□□□□□ -0.24
SMARCD1-203ENST00000547247 SMIM29Q86T20 159 aa13.54□□□□□ -0.24
SMARCD1-203ENST00000547247 NAA38Q9BRA0 125 aaKnown RBP13.54□□□□□ -0.24
SMARCD1-203ENST00000547247 SNHG12Q9BXW3 62 aa13.54□□□□□ -0.24
SMARCD1-203ENST00000547247 LINC00304Q8N9R0 145 aa13.52□□□□□ -0.25
SMARCD1-203ENST00000547247 PPDPFLQ8WWR9 84 aa13.52□□□□□ -0.25
SMARCD1-203ENST00000547247 DNAL4O96015 105 aa13.51□□□□□ -0.25
SMARCD1-203ENST00000547247 Q8NBF4 154 aa13.51□□□□□ -0.25
SMARCD1-203ENST00000547247 GHRHP01286 108 aa13.49□□□□□ -0.25
SMARCD1-203ENST00000547247 LST1O00453 97 aa13.48□□□□□ -0.25
SMARCD1-203ENST00000547247 H3BUT2 72 aa13.47□□□□□ -0.25
SMARCD1-203ENST00000547247 TAX1BP3O14907 124 aa13.47□□□□□ -0.25
SMARCD1-203ENST00000547247 C9orf118A6NHY6 69 aa13.46□□□□□ -0.25
SMARCD1-203ENST00000547247 TRACP01848 142 aa13.46□□□□□ -0.25
SMARCD1-203ENST00000547247 LYRM7Q5U5X0 104 aa13.46□□□□□ -0.25
SMARCD1-203ENST00000547247 F8WEM9 126 aa13.45□□□□□ -0.26
SMARCD1-203ENST00000547247 C4orf48Q5BLP8 95 aa13.45□□□□□ -0.26
SMARCD1-203ENST00000547247 SPAG11AQ6PDA7 123 aa13.45□□□□□ -0.26
SMARCD1-203ENST00000547247 ORMDL1Q9P0S3 153 aa13.44□□□□□ -0.26
SMARCD1-203ENST00000547247 COL5A1-AS1Q5SY13 56 aa13.43□□□□□ -0.26
SMARCD1-203ENST00000547247 TCL1BO95988 128 aa13.42□□□□□ -0.26
SMARCD1-203ENST00000547247 H3BQ85 93 aa13.41□□□□□ -0.26
SMARCD1-203ENST00000547247 ATXN8Q156A1 80 aa13.41□□□□□ -0.26
SMARCD1-203ENST00000547247 FABP2P12104 132 aa13.4□□□□□ -0.26
SMARCD1-203ENST00000547247 TRBV20-1A0A075B6N2 111 aa13.37□□□□□ -0.27
SMARCD1-203ENST00000547247 SPINK1P00995 79 aa13.37□□□□□ -0.27
SMARCD1-203ENST00000547247 NDUFV3P56181 108 aaKnown RBP13.37□□□□□ -0.27
SMARCD1-203ENST00000547247 IGLV8-61A0A075B6I0 122 aa13.37□□□□□ -0.27
SMARCD1-203ENST00000547247 A0A1W2PPM0 123 aa13.37□□□□□ -0.27
SMARCD1-203ENST00000547247 TMEM256-PLSCR3K7ERE1 68 aa13.37□□□□□ -0.27
SMARCD1-203ENST00000547247 HMCN2Q8NDA2 5059 aa13.36□□□□□ -0.27
SMARCD1-203ENST00000547247 Q6JHZ5 121 aa13.33□□□□□ -0.28
SMARCD1-203ENST00000547247 A0A0G2JQZ4 141 aa13.31□□□□□ -0.28
SMARCD1-203ENST00000547247 H3BMG7 143 aa13.3□□□□□ -0.28
SMARCD1-203ENST00000547247 BAALC-AS2P0C853 105 aa13.3□□□□□ -0.28
SMARCD1-203ENST00000547247 RPS29P62273 56 aaKnown RBP13.3□□□□□ -0.28
SMARCD1-203ENST00000547247 CD164Q04900 197 aa13.3□□□□□ -0.28
SMARCD1-203ENST00000547247 HRCT1Q6UXD1 115 aa13.3□□□□□ -0.28
SMARCD1-203ENST00000547247 UBE2V1Q13404 147 aa13.29□□□□□ -0.28
SMARCD1-203ENST00000547247 IGFL1Q6UW32 110 aa13.28□□□□□ -0.28
SMARCD1-203ENST00000547247 C9JAW5 83 aa13.24□□□□□ -0.29
SMARCD1-203ENST00000547247 SPCS1Q9Y6A9 102 aa13.24□□□□□ -0.29
SMARCD1-203ENST00000547247 ANKRD29Q8N6D5 301 aa13.23□□□□□ -0.29
SMARCD1-203ENST00000547247 LIMD2Q9BT23 127 aa13.22□□□□□ -0.29
SMARCD1-203ENST00000547247 RETNLBQ9BQ08 111 aa13.21□□□□□ -0.29
SMARCD1-203ENST00000547247 A0A1B0GV72 72 aa13.2□□□□□ -0.3
SMARCD1-203ENST00000547247 PRR4Q16378 134 aa13.19□□□□□ -0.3
SMARCD1-203ENST00000547247 RBM3P98179 157 aaKnown RBP13.15□□□□□ -0.3
SMARCD1-203ENST00000547247 Q5XG85 94 aa13.15□□□□□ -0.3
SMARCD1-203ENST00000547247 TEN1Q86WV5 123 aa13.15□□□□□ -0.3
SMARCD1-203ENST00000547247 TRBV7-7A0A0K0K1E9 115 aa13.14□□□□□ -0.31
SMARCD1-203ENST00000547247 H3BT86 120 aa13.13□□□□□ -0.31
SMARCD1-203ENST00000547247 Q6Q795 121 aa13.13□□□□□ -0.31
SMARCD1-203ENST00000547247 K7EP34 96 aa13.11□□□□□ -0.31
SMARCD1-203ENST00000547247 MTURNQ8N3F0 131 aa13.11□□□□□ -0.31
SMARCD1-203ENST00000547247 DSCR8Q96T75 97 aa13.11□□□□□ -0.31
SMARCD1-203ENST00000547247 JMJD7-PLA2G4BH0Y9G9 81 aa13.11□□□□□ -0.31
SMARCD1-203ENST00000547247 TRBV7-4A0A0J9YYF1 115 aa13.1□□□□□ -0.31
SMARCD1-203ENST00000547247 FP248Q71RG6 208 aaPredicted RBP13.09□□□□□ -0.31
SMARCD1-203ENST00000547247 A0A1W2PNM2 257 aa13.08□□□□□ -0.32
SMARCD1-203ENST00000547247 IGLV7-46A0A075B6I9 117 aa13.07□□□□□ -0.32
SMARCD1-203ENST00000547247 GTF2H5Q6ZYL4 71 aa13.07□□□□□ -0.32
SMARCD1-203ENST00000547247 CCKP06307 115 aa13.05□□□□□ -0.32
SMARCD1-203ENST00000547247 LRP2P98164 4655 aa13.03□□□□□ -0.32
SMARCD1-203ENST00000547247 A0A087WSZ3 146 aa13.03□□□□□ -0.32
SMARCD1-203ENST00000547247 SS18L2Q9UHA2 77 aa13.03□□□□□ -0.32
SMARCD1-203ENST00000547247 ASB16-AS1Q495Z4 193 aa13.02□□□□□ -0.33
SMARCD1-203ENST00000547247 OBSCN-AS1Q96MR7 158 aa13.02□□□□□ -0.33
SMARCD1-203ENST00000547247 C1orf195Q5TG92 126 aa13.01□□□□□ -0.33
SMARCD1-203ENST00000547247 VPS25Q9BRG1 176 aa13.01□□□□□ -0.33
SMARCD1-203ENST00000547247 PDE6GP18545 87 aa12.99□□□□□ -0.33
SMARCD1-203ENST00000547247 SMCPP49901 116 aaPredicted RBP12.99□□□□□ -0.33
SMARCD1-203ENST00000547247 C14orf132Q9NPU4 83 aa12.99□□□□□ -0.33
SMARCD1-203ENST00000547247 LPAP08519 4548 aa12.99□□□□□ -0.33
SMARCD1-203ENST00000547247 LOC110117498A0A087WWA1 95 aa12.98□□□□□ -0.33
SMARCD1-203ENST00000547247 PRO0461Q9UI25 63 aa12.98□□□□□ -0.33
SMARCD1-203ENST00000547247 UBR4Q5T4S7 5183 aa12.98□□□□□ -0.33
SMARCD1-203ENST00000547247 Q6ZQT0 140 aa12.97□□□□□ -0.33
SMARCD1-203ENST00000547247 TPRXLQ17RH7 258 aa12.95□□□□□ -0.34
SMARCD1-203ENST00000547247 F8W1H4 67 aa12.91□□□□□ -0.34
SMARCD1-203ENST00000547247 C21orf62-AS1Q17RA5 79 aa12.9□□□□□ -0.34
SMARCD1-203ENST00000547247 A0A1B0GW54 56 aa12.88□□□□□ -0.35
SMARCD1-203ENST00000547247 KRTAP13-3Q3SY46 172 aa12.88□□□□□ -0.35
SMARCD1-203ENST00000547247 CDIP1Q9H305 208 aa12.86□□□□□ -0.35
SMARCD1-203ENST00000547247 Q96NJ1 140 aa12.84□□□□□ -0.35
SMARCD1-203ENST00000547247 A0A1B0GV90 55 aa12.82□□□□□ -0.36
SMARCD1-203ENST00000547247 LINC00472Q9H8W2 130 aa12.79□□□□□ -0.36
SMARCD1-203ENST00000547247 ETDBQ3ZM63 59 aa12.77□□□□□ -0.36
SMARCD1-203ENST00000547247 C9orf92A6NGG3 77 aa12.76□□□□□ -0.37
SMARCD1-203ENST00000547247 IGKV4-1P06312 121 aa12.75□□□□□ -0.37
SMARCD1-203ENST00000547247 DEFB116Q30KQ4 102 aa12.74□□□□□ -0.37
SMARCD1-203ENST00000547247 SIGMAR1Q99720 223 aa12.74□□□□□ -0.37
SMARCD1-203ENST00000547247 NREPQ16612 68 aa12.69□□□□□ -0.38
SMARCD1-203ENST00000547247 XP32Q5T750 250 aa12.69□□□□□ -0.38
SMARCD1-203ENST00000547247 J3KT08 172 aa12.67□□□□□ -0.38
SMARCD1-203ENST00000547247 RNF213Q63HN8 5207 aa12.65□□□□□ -0.38
SMARCD1-203ENST00000547247 Q6ZVQ6 151 aa12.57□□□□□ -0.4
SMARCD1-203ENST00000547247 LINC00846Q9NV44 126 aa12.57□□□□□ -0.4
SMARCD1-203ENST00000547247 IGHV6-1A0A0B4J1U7 121 aa12.56□□□□□ -0.4
SMARCD1-203ENST00000547247 NDUFB1O75438 58 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms