RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 HTTP42858 3142 aa8.26□□□□□ -1.09
TCOF1-214ENST00000515035 STAB1Q9NY15 2570 aa8.25□□□□□ -1.09
TCOF1-214ENST00000515035 CFAP54Q96N23 3096 aa8.23□□□□□ -1.09
TCOF1-214ENST00000515035 CAMK2N1Q7Z7J9 78 aa8.22□□□□□ -1.09
TCOF1-214ENST00000515035 DMAC1Q96GE9 116 aa8.22□□□□□ -1.09
TCOF1-214ENST00000515035 MKI67P46013 3256 aaKnown RBP8.22□□□□□ -1.09
TCOF1-214ENST00000515035 CENPEQ02224 2701 aa8.21□□□□□ -1.1
TCOF1-214ENST00000515035 SPRR1AP35321 89 aa8.21□□□□□ -1.1
TCOF1-214ENST00000515035 ZNF292O60281 2723 aa8.2□□□□□ -1.1
TCOF1-214ENST00000515035 A0A0A0MQY5 61 aa8.19□□□□□ -1.1
TCOF1-214ENST00000515035 LINC00472Q9H8W2 130 aa8.19□□□□□ -1.1
TCOF1-214ENST00000515035 TRANK1O15050 2925 aa8.18□□□□□ -1.1
TCOF1-214ENST00000515035 LINC00483Q53H64 154 aa8.18□□□□□ -1.1
TCOF1-214ENST00000515035 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.18□□□□□ -1.1
TCOF1-214ENST00000515035 NBEAL1Q6ZS30 2694 aa8.18□□□□□ -1.1
TCOF1-214ENST00000515035 BRCA2P51587 3418 aa8.17□□□□□ -1.1
TCOF1-214ENST00000515035 Q5W150 140 aa8.17□□□□□ -1.1
TCOF1-214ENST00000515035 CHD6Q8TD26 2715 aa8.17□□□□□ -1.1
TCOF1-214ENST00000515035 TNP2Q05952 138 aa8.16□□□□□ -1.1
TCOF1-214ENST00000515035 RANBP2P49792 3224 aaKnown RBP8.16□□□□□ -1.1
TCOF1-214ENST00000515035 ZCCHC13Q8WW36 166 aaKnown RBP8.16□□□□□ -1.1
TCOF1-214ENST00000515035 LAMA2P24043 3122 aaKnown RBP8.14□□□□□ -1.11
TCOF1-214ENST00000515035 NOTCH1P46531 2555 aa8.13□□□□□ -1.11
TCOF1-214ENST00000515035 Q6ZSA8 131 aa8.12□□□□□ -1.11
TCOF1-214ENST00000515035 SPRR1BP22528 89 aa8.12□□□□□ -1.11
TCOF1-214ENST00000515035 LAMA3Q16787 3333 aa8.11□□□□□ -1.11
TCOF1-214ENST00000515035 TEP1Q99973 2627 aaKnown RBP8.11□□□□□ -1.11
TCOF1-214ENST00000515035 SETXQ7Z333 2677 aaKnown RBP8.08□□□□□ -1.12
TCOF1-214ENST00000515035 DMBT1Q9UGM3 2413 aaPredicted RBP8.07□□□□□ -1.12
TCOF1-214ENST00000515035 UNC79Q9P2D8 2635 aa8.07□□□□□ -1.12
TCOF1-214ENST00000515035 MGAQ8IWI9 3026 aa8.05□□□□□ -1.12
TCOF1-214ENST00000515035 RPL37P61927 97 aaKnown RBP8.05□□□□□ -1.12
TCOF1-214ENST00000515035 ROMO1P60602 79 aa8.04□□□□□ -1.12
TCOF1-214ENST00000515035 S4R3F8 94 aa8.04□□□□□ -1.12
TCOF1-214ENST00000515035 PLAC8Q9NZF1 115 aa8.02□□□□□ -1.13
TCOF1-214ENST00000515035 STAB2Q8WWQ8 2551 aa8.02□□□□□ -1.13
TCOF1-214ENST00000515035 KRTAP26-1Q6PEX3 210 aa8.01□□□□□ -1.13
TCOF1-214ENST00000515035 GCN1Q92616 2671 aaKnown RBP8.01□□□□□ -1.13
TCOF1-214ENST00000515035 ASB16-AS1Q495Z4 193 aa8.01□□□□□ -1.13
TCOF1-214ENST00000515035 COL6A5A8TX70 2615 aa8.01□□□□□ -1.13
TCOF1-214ENST00000515035 BAHCC1Q9P281 2608 aa8□□□□□ -1.13
TCOF1-214ENST00000515035 TEX15Q9BXT5 2789 aa7.99□□□□□ -1.13
TCOF1-214ENST00000515035 R4GN34 69 aa7.97□□□□□ -1.13
TCOF1-214ENST00000515035 H1FX-AS1Q4G0G2 97 aa7.96□□□□□ -1.13
TCOF1-214ENST00000515035 Q6ZR54 194 aa7.96□□□□□ -1.14
TCOF1-214ENST00000515035 KRTAP29-1A8MX34 341 aaPredicted RBP7.95□□□□□ -1.14
TCOF1-214ENST00000515035 IGSF10Q6WRI0 2623 aa7.95□□□□□ -1.14
TCOF1-214ENST00000515035 PRUNE2Q8WUY3 3088 aa7.93□□□□□ -1.14
TCOF1-214ENST00000515035 LCE6AA0A183 80 aa7.93□□□□□ -1.14
TCOF1-214ENST00000515035 WDFY4Q6ZS81 3184 aa7.92□□□□□ -1.14
TCOF1-214ENST00000515035 TRIOO75962 3097 aa7.9□□□□□ -1.15
TCOF1-214ENST00000515035 SPATA8Q6RVD6 105 aa7.89□□□□□ -1.15
TCOF1-214ENST00000515035 A6NN06 94 aa7.89□□□□□ -1.15
TCOF1-214ENST00000515035 UNC80Q8N2C7 3258 aa7.88□□□□□ -1.15
TCOF1-214ENST00000515035 VPS13AQ96RL7 3174 aa7.87□□□□□ -1.15
TCOF1-214ENST00000515035 KRTAP4-16G5E9R7 235 aaPredicted RBP7.87□□□□□ -1.15
TCOF1-214ENST00000515035 MAP1AP78559 2803 aaPredicted RBP7.87□□□□□ -1.15
TCOF1-214ENST00000515035 KRTAP16-1A8MUX0 517 aa7.86□□□□□ -1.15
TCOF1-214ENST00000515035 KRTAP1-5Q9BYS1 174 aa7.86□□□□□ -1.15
TCOF1-214ENST00000515035 FRYQ5TBA9 3013 aa7.86□□□□□ -1.15
TCOF1-214ENST00000515035 CDH23Q9H251 3354 aa7.86□□□□□ -1.15
TCOF1-214ENST00000515035 M0R2T5 61 aa7.85□□□□□ -1.15
TCOF1-214ENST00000515035 DSPP15924 2871 aaKnown RBP7.85□□□□□ -1.15
TCOF1-214ENST00000515035 NBEAL2Q6ZNJ1 2754 aa7.84□□□□□ -1.15
TCOF1-214ENST00000515035 M0QZ58 72 aa7.82□□□□□ -1.16
TCOF1-214ENST00000515035 KRTAP25-1Q3LHN0 102 aa7.79□□□□□ -1.16
TCOF1-214ENST00000515035 Q5VSD8 79 aa7.77□□□□□ -1.16
TCOF1-214ENST00000515035 NBEAQ8NFP9 2946 aa7.77□□□□□ -1.16
TCOF1-214ENST00000515035 ADM2Q7Z4H4 148 aa7.77□□□□□ -1.17
TCOF1-214ENST00000515035 XIRP2A4UGR9 3374 aa7.76□□□□□ -1.17
TCOF1-214ENST00000515035 KRTAP10-1P60331 282 aa7.76□□□□□ -1.17
TCOF1-214ENST00000515035 A0A087X002 238 aa7.75□□□□□ -1.17
TCOF1-214ENST00000515035 NOTCH2NLQ7Z3S9 236 aa7.75□□□□□ -1.17
TCOF1-214ENST00000515035 A8MU10 97 aa7.74□□□□□ -1.17
TCOF1-214ENST00000515035 KRTAP10-2P60368 255 aa7.73□□□□□ -1.17
TCOF1-214ENST00000515035 PANO1I0J062 215 aa7.73□□□□□ -1.17
TCOF1-214ENST00000515035 UBR5O95071 2799 aaPredicted RBP7.71□□□□□ -1.17
TCOF1-214ENST00000515035 SZT2Q5T011 3432 aa7.71□□□□□ -1.17
TCOF1-214ENST00000515035 FREM2Q5SZK8 3169 aa7.69□□□□□ -1.18
TCOF1-214ENST00000515035 KRTAP21-3Q3LHN1 58 aa7.69□□□□□ -1.18
TCOF1-214ENST00000515035 SEC61BP60468 96 aaKnown RBP7.69□□□□□ -1.18
TCOF1-214ENST00000515035 NDUFAF8A1L188 74 aa7.68□□□□□ -1.18
TCOF1-214ENST00000515035 NSD1Q96L73 2696 aaPredicted RBP7.68□□□□□ -1.18
TCOF1-214ENST00000515035 KALRNO60229 2985 aa7.68□□□□□ -1.18
TCOF1-214ENST00000515035 ITPR2Q14571 2701 aa7.64□□□□□ -1.19
TCOF1-214ENST00000515035 LAMA1P25391 3075 aa7.63□□□□□ -1.19
TCOF1-214ENST00000515035 CELSR3Q9NYQ7 3312 aa7.63□□□□□ -1.19
TCOF1-214ENST00000515035 PLAC4Q8WY50 150 aa7.59□□□□□ -1.19
TCOF1-214ENST00000515035 FLNCQ14315 2725 aa7.57□□□□□ -1.2
TCOF1-214ENST00000515035 KRTAP11-1Q8IUC1 163 aa7.57□□□□□ -1.2
TCOF1-214ENST00000515035 VCANP13611 3396 aa7.56□□□□□ -1.2
TCOF1-214ENST00000515035 ADGRG4Q8IZF6 3080 aa7.56□□□□□ -1.2
TCOF1-214ENST00000515035 ITPR1Q14643 2758 aa7.55□□□□□ -1.2
TCOF1-214ENST00000515035 COL6A3P12111 3177 aa7.54□□□□□ -1.2
TCOF1-214ENST00000515035 KRTAP7-1Q8IUC3 87 aa7.52□□□□□ -1.21
TCOF1-214ENST00000515035 EYSQ5T1H1 3165 aa7.51□□□□□ -1.21
TCOF1-214ENST00000515035 Q6ZRN7 208 aaPredicted RBP7.5□□□□□ -1.21
TCOF1-214ENST00000515035 C20orf166-AS1Q96NR2 134 aa7.5□□□□□ -1.21
TCOF1-214ENST00000515035 DNAH14Q0VDD8 3507 aa7.5□□□□□ -1.21
TCOF1-214ENST00000515035 ATMQ13315 3056 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms