RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 COX6CP09669 75 aa8.22□□□□□ -1.09
NUP54-216ENST00000514901 PSMB2P49721 201 aa8.22□□□□□ -1.09
NUP54-216ENST00000514901 OCIAD2Q56VL3 154 aa8.22□□□□□ -1.09
NUP54-216ENST00000514901 TRIAP1O43715 76 aa8.21□□□□□ -1.1
NUP54-216ENST00000514901 GHRHP01286 108 aa8.21□□□□□ -1.1
NUP54-216ENST00000514901 RPS29P62273 56 aaKnown RBP8.21□□□□□ -1.1
NUP54-216ENST00000514901 PRR4Q16378 134 aa8.2□□□□□ -1.1
NUP54-216ENST00000514901 F8WEM9 126 aa8.19□□□□□ -1.1
NUP54-216ENST00000514901 FAM218AQ96MZ4 157 aa8.18□□□□□ -1.1
NUP54-216ENST00000514901 CD164Q04900 197 aa8.17□□□□□ -1.1
NUP54-216ENST00000514901 SNHG12Q9BXW3 62 aa8.17□□□□□ -1.1
NUP54-216ENST00000514901 SCGB1C2P0DMR2 95 aa8.15□□□□□ -1.1
NUP54-216ENST00000514901 H3BQ85 93 aa8.14□□□□□ -1.11
NUP54-216ENST00000514901 DNAL4O96015 105 aa8.14□□□□□ -1.11
NUP54-216ENST00000514901 Q6JHZ5 121 aa8.14□□□□□ -1.11
NUP54-216ENST00000514901 CLEC2BQ92478 149 aa8.14□□□□□ -1.11
NUP54-216ENST00000514901 IGLV8-61A0A075B6I0 122 aa8.13□□□□□ -1.11
NUP54-216ENST00000514901 FP248Q71RG6 208 aaPredicted RBP8.13□□□□□ -1.11
NUP54-216ENST00000514901 RETNLBQ9BQ08 111 aa8.13□□□□□ -1.11
NUP54-216ENST00000514901 LIMD2Q9BT23 127 aa8.12□□□□□ -1.11
NUP54-216ENST00000514901 LRP2P98164 4655 aa8.12□□□□□ -1.11
NUP54-216ENST00000514901 HRCT1Q6UXD1 115 aa8.11□□□□□ -1.11
NUP54-216ENST00000514901 IGLV7-46A0A075B6I9 117 aa8.1□□□□□ -1.11
NUP54-216ENST00000514901 ORMDL1Q9P0S3 153 aa8.1□□□□□ -1.11
NUP54-216ENST00000514901 TRACP01848 142 aa8.09□□□□□ -1.11
NUP54-216ENST00000514901 FABP2P12104 132 aa8.09□□□□□ -1.11
NUP54-216ENST00000514901 NDUFV3P56181 108 aaKnown RBP8.09□□□□□ -1.11
NUP54-216ENST00000514901 TMEM256-PLSCR3K7ERE1 68 aa8.08□□□□□ -1.12
NUP54-216ENST00000514901 Q5XG85 94 aa8.08□□□□□ -1.12
NUP54-216ENST00000514901 LST1O00453 97 aa8.07□□□□□ -1.12
NUP54-216ENST00000514901 BATFQ16520 125 aa8.07□□□□□ -1.12
NUP54-216ENST00000514901 A0A0G2JQZ4 141 aa8.06□□□□□ -1.12
NUP54-216ENST00000514901 IGFL1Q6UW32 110 aa8.06□□□□□ -1.12
NUP54-216ENST00000514901 LPAP08519 4548 aa8.06□□□□□ -1.12
NUP54-216ENST00000514901 TPRXLQ17RH7 258 aa8.05□□□□□ -1.12
NUP54-216ENST00000514901 LYRM7Q5U5X0 104 aa8.05□□□□□ -1.12
NUP54-216ENST00000514901 H3BMG7 143 aa8.04□□□□□ -1.12
NUP54-216ENST00000514901 H3BUT2 72 aa8.04□□□□□ -1.12
NUP54-216ENST00000514901 TCL1BO95988 128 aa8.04□□□□□ -1.12
NUP54-216ENST00000514901 ATXN8Q156A1 80 aa8.03□□□□□ -1.12
NUP54-216ENST00000514901 UBE2V1Q13404 147 aa8.02□□□□□ -1.13
NUP54-216ENST00000514901 TRBV7-7A0A0K0K1E9 115 aa8.01□□□□□ -1.13
NUP54-216ENST00000514901 NAA38Q9BRA0 125 aaKnown RBP8.01□□□□□ -1.13
NUP54-216ENST00000514901 TRBV20-1A0A075B6N2 111 aa8□□□□□ -1.13
NUP54-216ENST00000514901 Q6Q795 121 aa8□□□□□ -1.13
NUP54-216ENST00000514901 UBR4Q5T4S7 5183 aa7.99□□□□□ -1.13
NUP54-216ENST00000514901 C9orf118A6NHY6 69 aa7.99□□□□□ -1.13
NUP54-216ENST00000514901 BAALC-AS2P0C853 105 aa7.99□□□□□ -1.13
NUP54-216ENST00000514901 TEN1Q86WV5 123 aa7.99□□□□□ -1.13
NUP54-216ENST00000514901 CDIP1Q9H305 208 aa7.99□□□□□ -1.13
NUP54-216ENST00000514901 ASB16-AS1Q495Z4 193 aa7.98□□□□□ -1.13
NUP54-216ENST00000514901 TAX1BP3O14907 124 aa7.97□□□□□ -1.13
NUP54-216ENST00000514901 C1orf195Q5TG92 126 aa7.97□□□□□ -1.13
NUP54-216ENST00000514901 ANKRD29Q8N6D5 301 aa7.97□□□□□ -1.13
NUP54-216ENST00000514901 KRTAP13-3Q3SY46 172 aa7.96□□□□□ -1.14
NUP54-216ENST00000514901 SS18L2Q9UHA2 77 aa7.95□□□□□ -1.14
NUP54-216ENST00000514901 RBM3P98179 157 aaKnown RBP7.94□□□□□ -1.14
NUP54-216ENST00000514901 A0A1W2PPM0 123 aa7.93□□□□□ -1.14
NUP54-216ENST00000514901 COL5A1-AS1Q5SY13 56 aa7.93□□□□□ -1.14
NUP54-216ENST00000514901 TRBV7-4A0A0J9YYF1 115 aa7.91□□□□□ -1.14
NUP54-216ENST00000514901 A0A1W2PNM2 257 aa7.91□□□□□ -1.14
NUP54-216ENST00000514901 DSCR8Q96T75 97 aa7.91□□□□□ -1.14
NUP54-216ENST00000514901 A0A1B0GV72 72 aa7.9□□□□□ -1.14
NUP54-216ENST00000514901 A0A087WSZ3 146 aa7.89□□□□□ -1.15
NUP54-216ENST00000514901 JMJD7-PLA2G4BH0Y9G9 81 aa7.89□□□□□ -1.15
NUP54-216ENST00000514901 C9JAW5 83 aa7.88□□□□□ -1.15
NUP54-216ENST00000514901 CCKP06307 115 aa7.88□□□□□ -1.15
NUP54-216ENST00000514901 PCP4L1A6NKN8 68 aa7.87□□□□□ -1.15
NUP54-216ENST00000514901 PDE6GP18545 87 aa7.85□□□□□ -1.15
NUP54-216ENST00000514901 C21orf62-AS1Q17RA5 79 aa7.85□□□□□ -1.15
NUP54-216ENST00000514901 H3BT86 120 aa7.84□□□□□ -1.15
NUP54-216ENST00000514901 XP32Q5T750 250 aa7.84□□□□□ -1.15
NUP54-216ENST00000514901 SPCS1Q9Y6A9 102 aa7.84□□□□□ -1.15
NUP54-216ENST00000514901 MUC17Q685J3 4493 aa7.83□□□□□ -1.16
NUP54-216ENST00000514901 RNF213Q63HN8 5207 aa7.82□□□□□ -1.16
NUP54-216ENST00000514901 LOC110117498A0A087WWA1 95 aa7.82□□□□□ -1.16
NUP54-216ENST00000514901 C9orf92A6NGG3 77 aa7.82□□□□□ -1.16
NUP54-216ENST00000514901 SEC61BP60468 96 aaKnown RBP7.82□□□□□ -1.16
NUP54-216ENST00000514901 VPS25Q9BRG1 176 aa7.82□□□□□ -1.16
NUP54-216ENST00000514901 A0A1B0GW54 56 aa7.81□□□□□ -1.16
NUP54-216ENST00000514901 OBSCN-AS1Q96MR7 158 aa7.81□□□□□ -1.16
NUP54-216ENST00000514901 Q6ZQT0 140 aa7.8□□□□□ -1.16
NUP54-216ENST00000514901 Q96NJ1 140 aa7.79□□□□□ -1.16
NUP54-216ENST00000514901 C14orf132Q9NPU4 83 aa7.77□□□□□ -1.17
NUP54-216ENST00000514901 K7EP34 96 aa7.76□□□□□ -1.17
NUP54-216ENST00000514901 LINC00472Q9H8W2 130 aa7.76□□□□□ -1.17
NUP54-216ENST00000514901 MTURNQ8N3F0 131 aa7.75□□□□□ -1.17
NUP54-216ENST00000514901 IGKV4-1P06312 121 aa7.74□□□□□ -1.17
NUP54-216ENST00000514901 GTF2H5Q6ZYL4 71 aa7.74□□□□□ -1.17
NUP54-216ENST00000514901 SIGMAR1Q99720 223 aa7.74□□□□□ -1.17
NUP54-216ENST00000514901 J3KT08 172 aa7.71□□□□□ -1.18
NUP54-216ENST00000514901 RPL37P61927 97 aaKnown RBP7.7□□□□□ -1.18
NUP54-216ENST00000514901 PRO0461Q9UI25 63 aa7.7□□□□□ -1.18
NUP54-216ENST00000514901 MUC2Q02817 5179 aa7.7□□□□□ -1.18
NUP54-216ENST00000514901 SMCPP49901 116 aaPredicted RBP7.69□□□□□ -1.18
NUP54-216ENST00000514901 DEFB116Q30KQ4 102 aa7.69□□□□□ -1.18
NUP54-216ENST00000514901 A0A0U1RQV1 116 aa7.68□□□□□ -1.18
NUP54-216ENST00000514901 LINC00313P59037 77 aa7.67□□□□□ -1.18
NUP54-216ENST00000514901 PCOTHQ58A44 107 aa7.67□□□□□ -1.18
NUP54-216ENST00000514901 Q75L30 129 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms