RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 SPTBN1Q01082 2364 aaKnown RBP1.9□□□□□ -2.11
NUP54-209ENST00000510569 K7EIM0 57 aa1.9□□□□□ -2.11
NUP54-209ENST00000510569 IFI27P40305 119 aaPredicted RBP1.9□□□□□ -2.11
NUP54-209ENST00000510569 CRIP1P50238 77 aa1.9□□□□□ -2.11
NUP54-209ENST00000510569 C10orf55Q5SWW7 151 aa1.9□□□□□ -2.11
NUP54-209ENST00000510569 C10orf113Q5VZT2 155 aa1.9□□□□□ -2.11
NUP54-209ENST00000510569 LEAP2Q969E1 77 aa1.9□□□□□ -2.11
NUP54-209ENST00000510569 UBE2D4Q9Y2X8 147 aa1.9□□□□□ -2.11
NUP54-209ENST00000510569 MED13LQ71F56 2210 aa1.9□□□□□ -2.11
NUP54-209ENST00000510569 NBASA2RRP1 2371 aa1.9□□□□□ -2.11
NUP54-209ENST00000510569 DOPEY1Q5JWR5 2465 aa1.89□□□□□ -2.11
NUP54-209ENST00000510569 A0A1B0GUT8 65 aa1.89□□□□□ -2.11
NUP54-209ENST00000510569 HRES1P13985 223 aa1.89□□□□□ -2.11
NUP54-209ENST00000510569 CCL3L1P16619 93 aa1.89□□□□□ -2.11
NUP54-209ENST00000510569 PDE6GP18545 87 aa1.89□□□□□ -2.11
NUP54-209ENST00000510569 HCP5Q6MZN7 132 aa1.89□□□□□ -2.11
NUP54-209ENST00000510569 TEP1Q99973 2627 aaKnown RBP1.89□□□□□ -2.11
NUP54-209ENST00000510569 CSMD2Q7Z408 3487 aa1.89□□□□□ -2.11
NUP54-209ENST00000510569 ANK3Q12955 4377 aaKnown RBP1.89□□□□□ -2.11
NUP54-209ENST00000510569 SPTAN1Q13813 2472 aaKnown RBP1.89□□□□□ -2.11
NUP54-209ENST00000510569 LEPROTL1O95214 131 aa1.88□□□□□ -2.11
NUP54-209ENST00000510569 PPP1R17O96001 155 aa1.88□□□□□ -2.11
NUP54-209ENST00000510569 ARMS2P0C7Q2 107 aa1.88□□□□□ -2.11
NUP54-209ENST00000510569 DEFB109BQ30KR1 87 aa1.88□□□□□ -2.11
NUP54-209ENST00000510569 FAM103A1Q9BTL3 118 aaKnown RBP1.88□□□□□ -2.11
NUP54-209ENST00000510569 MXRA5Q9NR99 2828 aa1.88□□□□□ -2.11
NUP54-209ENST00000510569 ZANQ9Y493 2812 aa1.88□□□□□ -2.11
NUP54-209ENST00000510569 TRBV6-4A0A1B0GX49 114 aa1.87□□□□□ -2.11
NUP54-209ENST00000510569 JMJD7-PLA2G4BH0Y9G9 81 aa1.87□□□□□ -2.11
NUP54-209ENST00000510569 M0R1W7 72 aa1.87□□□□□ -2.11
NUP54-209ENST00000510569 SPINK4O60575 86 aa1.87□□□□□ -2.11
NUP54-209ENST00000510569 SPAG11BQ08648 103 aa1.87□□□□□ -2.11
NUP54-209ENST00000510569 FAM74A4Q5TZK3 123 aa1.87□□□□□ -2.11
NUP54-209ENST00000510569 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.87□□□□□ -2.114e-8■■■■■ 30.4
NUP54-209ENST00000510569 SPAG11AQ6PDA7 123 aa1.87□□□□□ -2.11
NUP54-209ENST00000510569 HIVEP1P15822 2718 aa1.87□□□□□ -2.11
NUP54-209ENST00000510569 TENM1Q9UKZ4 2725 aa1.87□□□□□ -2.11
NUP54-209ENST00000510569 CR1P17927 2039 aa1.86□□□□□ -2.11
NUP54-209ENST00000510569 TRBV7-4A0A0J9YYF1 115 aa1.86□□□□□ -2.11
NUP54-209ENST00000510569 D6R8Y8 96 aa1.86□□□□□ -2.11
NUP54-209ENST00000510569 M0R3E3 92 aa1.86□□□□□ -2.11
NUP54-209ENST00000510569 COX6B1P14854 86 aa1.86□□□□□ -2.11
NUP54-209ENST00000510569 CCL18P55774 89 aa1.86□□□□□ -2.11
NUP54-209ENST00000510569 TPRXLQ17RH7 258 aa1.86□□□□□ -2.11
NUP54-209ENST00000510569 MUSTN1Q8IVN3 82 aa1.86□□□□□ -2.11
NUP54-209ENST00000510569 DEFB108BQ8NET1 73 aa1.86□□□□□ -2.11
NUP54-209ENST00000510569 COX7B2Q8TF08 81 aa1.86□□□□□ -2.11
NUP54-209ENST00000510569 PRR15LQ9BU68 103 aa1.86□□□□□ -2.11
NUP54-209ENST00000510569 AKAP6Q13023 2319 aa1.85□□□□□ -2.11
NUP54-209ENST00000510569 CREBBPQ92793 2442 aa1.85□□□□□ -2.11
NUP54-209ENST00000510569 MAP1AP78559 2803 aaPredicted RBP1.85□□□□□ -2.11
NUP54-209ENST00000510569 TRBV6-5A0A0K0K1A5 114 aa1.85□□□□□ -2.11
NUP54-209ENST00000510569 K7EMI3 77 aa1.85□□□□□ -2.11
NUP54-209ENST00000510569 FCER1GP30273 86 aa1.85□□□□□ -2.11
NUP54-209ENST00000510569 ATXN8Q156A1 80 aa1.85□□□□□ -2.11
NUP54-209ENST00000510569 MINOS1Q5TGZ0 78 aa1.85□□□□□ -2.11
NUP54-209ENST00000510569 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.85□□□□□ -2.11
NUP54-209ENST00000510569 SPACA4Q8TDM5 124 aa1.85□□□□□ -2.11
NUP54-209ENST00000510569 CSPG4Q6UVK1 2322 aa1.84□□□□□ -2.11
NUP54-209ENST00000510569 IGKV2-40A0A087WW87 121 aaPredicted RBP1.84□□□□□ -2.11
NUP54-209ENST00000510569 IGKV3D-7A0A0C4DH55 119 aa1.84□□□□□ -2.11
NUP54-209ENST00000510569 IGKV3OR2-268A0A0C4DH90 116 aa1.84□□□□□ -2.11
NUP54-209ENST00000510569 A0A0G2JQZ4 141 aa1.84□□□□□ -2.11
NUP54-209ENST00000510569 F8VRH5 84 aa1.84□□□□□ -2.11
NUP54-209ENST00000510569 H3BVH4 76 aa1.84□□□□□ -2.11
NUP54-209ENST00000510569 DNAL4O96015 105 aa1.84□□□□□ -2.11
NUP54-209ENST00000510569 IGKV2D-40P01614 121 aaPredicted RBP1.84□□□□□ -2.11
NUP54-209ENST00000510569 KRTAP21-3Q3LHN1 58 aa1.84□□□□□ -2.11
NUP54-209ENST00000510569 NSD1Q96L73 2696 aaPredicted RBP1.84□□□□□ -2.11
NUP54-209ENST00000510569 DNHD1Q96M86 4753 aa1.84□□□□□ -2.12
NUP54-209ENST00000510569 SETD2Q9BYW2 2564 aaPredicted RBP1.84□□□□□ -2.12
NUP54-209ENST00000510569 ITPR3Q14573 2671 aa1.84□□□□□ -2.12
NUP54-209ENST00000510569 NIPBLQ6KC79 2804 aaeCLIP1.83□□□□□ -2.12
NUP54-209ENST00000510569 A0A1W2PNN7 141 aa1.83□□□□□ -2.12
NUP54-209ENST00000510569 A8MTW9 85 aa1.83□□□□□ -2.12
NUP54-209ENST00000510569 UQCR11O14957 56 aa1.83□□□□□ -2.12
NUP54-209ENST00000510569 SMIM2Q9BVW6 85 aa1.83□□□□□ -2.12
NUP54-209ENST00000510569 LINC01558Q9Y6Z2 57 aa1.83□□□□□ -2.12
NUP54-209ENST00000510569 SPG11Q96JI7 2443 aa1.83□□□□□ -2.12
NUP54-209ENST00000510569 ZNF469Q96JG9 3925 aaPredicted RBP1.83□□□□□ -2.12
NUP54-209ENST00000510569 POLQO75417 2590 aa1.83□□□□□ -2.12
NUP54-209ENST00000510569 FLNAP21333 2647 aaKnown RBP1.83□□□□□ -2.12
NUP54-209ENST00000510569 SORL1Q92673 2214 aa1.82□□□□□ -2.12
NUP54-209ENST00000510569 A0A087WVE0 104 aa1.82□□□□□ -2.12
NUP54-209ENST00000510569 IGIPA6NJ69 53 aa1.82□□□□□ -2.12
NUP54-209ENST00000510569 H3BUA1 57 aa1.82□□□□□ -2.12
NUP54-209ENST00000510569 MGPP08493 103 aa1.82□□□□□ -2.12
NUP54-209ENST00000510569 RNASE3P12724 160 aaKnown RBP1.82□□□□□ -2.12
NUP54-209ENST00000510569 PLNP26678 52 aa1.82□□□□□ -2.12
NUP54-209ENST00000510569 POLR2KP53803 58 aaKnown RBP1.82□□□□□ -2.12
NUP54-209ENST00000510569 RPL37AP61513 92 aaKnown RBP1.82□□□□□ -2.12
NUP54-209ENST00000510569 KRTAP13-4Q3LI77 160 aa1.82□□□□□ -2.12
NUP54-209ENST00000510569 C5orf56Q8N8D9 126 aa1.82□□□□□ -2.12
NUP54-209ENST00000510569 LINC00846Q9NV44 126 aa1.82□□□□□ -2.12
NUP54-209ENST00000510569 PLAC8Q9NZF1 115 aa1.82□□□□□ -2.12
NUP54-209ENST00000510569 F8P00451 2351 aa1.81□□□□□ -2.12
NUP54-209ENST00000510569 DNAH3Q8TD57 4116 aa1.81□□□□□ -2.12
NUP54-209ENST00000510569 IGKV2-24A0A0C4DH68 120 aa1.81□□□□□ -2.12
NUP54-209ENST00000510569 NBDYA0A0U1RRE5 68 aa1.81□□□□□ -2.12
NUP54-209ENST00000510569 LINC01549A6NIU2 74 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms