RNA–Protein interactions for RNA: ENST00000496050.1

SSR3-208, Transcript of signal sequence receptor subunit 3, humanhuman

TSL 4 BASIC

Gene SSR3, Length 579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR3-208ENST00000496050 COX6B1P14854 86 aa0.5□□□□□ -2.33
SSR3-208ENST00000496050 HMGA1P17096 107 aaKnown RBP0.5□□□□□ -2.33
SSR3-208ENST00000496050 IFI27P40305 119 aaPredicted RBP0.5□□□□□ -2.33
SSR3-208ENST00000496050 USF3Q68DE3 2245 aa0.5□□□□□ -2.33
SSR3-208ENST00000496050 WDFY3Q8IZQ1 3526 aa0.5□□□□□ -2.33
SSR3-208ENST00000496050 KIAA0556O60303 1618 aa0.49□□□□□ -2.33
SSR3-208ENST00000496050 DOPEY2Q9Y3R5 2298 aa0.49□□□□□ -2.33
SSR3-208ENST00000496050 CSMD2Q7Z408 3487 aa0.49□□□□□ -2.33
SSR3-208ENST00000496050 LOC400499M0QZD8 3231 aa0.49□□□□□ -2.33
SSR3-208ENST00000496050 COX8AP10176 69 aa0.49□□□□□ -2.33
SSR3-208ENST00000496050 SPRR1AP35321 89 aa0.49□□□□□ -2.33
SSR3-208ENST00000496050 DEFA5Q01523 94 aa0.49□□□□□ -2.33
SSR3-208ENST00000496050 Q5BKY6 102 aa0.49□□□□□ -2.33
SSR3-208ENST00000496050 FRYQ5TBA9 3013 aa0.49□□□□□ -2.33
SSR3-208ENST00000496050 WNK1Q9H4A3 2382 aa0.49□□□□□ -2.33
SSR3-208ENST00000496050 MYO15AQ9UKN7 3530 aa0.49□□□□□ -2.33
SSR3-208ENST00000496050 RGPD1P0DJD0 1748 aa0.49□□□□□ -2.33
SSR3-208ENST00000496050 CENPEQ02224 2701 aa0.49□□□□□ -2.33
SSR3-208ENST00000496050 VPS13CQ709C8 3753 aa0.49□□□□□ -2.33
SSR3-208ENST00000496050 LRRC7Q96NW7 1537 aa0.48□□□□□ -2.33
SSR3-208ENST00000496050 DMXL1Q9Y485 3027 aa0.48□□□□□ -2.33
SSR3-208ENST00000496050 XIRP2A4UGR9 3374 aa0.48□□□□□ -2.33
SSR3-208ENST00000496050 MAP1AP78559 2803 aaPredicted RBP0.48□□□□□ -2.33
SSR3-208ENST00000496050 RGPD8O14715 1765 aaPredicted RBP0.48□□□□□ -2.33
SSR3-208ENST00000496050 RGPD2P0DJD1 1756 aa0.48□□□□□ -2.33
SSR3-208ENST00000496050 RGPD5Q99666 1765 aa0.48□□□□□ -2.33
SSR3-208ENST00000496050 PKD1L3Q7Z443 1732 aa0.48□□□□□ -2.33
SSR3-208ENST00000496050 FXYD6-FXYD2A0A087WZ82 144 aa0.48□□□□□ -2.33
SSR3-208ENST00000496050 SPTY2D1-AS1A0A0U1RR47 76 aa0.48□□□□□ -2.33
SSR3-208ENST00000496050 CPSF4LA6NMK7 179 aaKnown RBP0.48□□□□□ -2.33
SSR3-208ENST00000496050 HEPN1Q6WQI6 88 aa0.48□□□□□ -2.33
SSR3-208ENST00000496050 FAT3Q8TDW7 4589 aa0.48□□□□□ -2.33
SSR3-208ENST00000496050 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.48□□□□□ -2.332e-6■■■□□ 19
SSR3-208ENST00000496050 MAGI3Q5TCQ9 1506 aa0.48□□□□□ -2.33
SSR3-208ENST00000496050 PIK3C2BO00750 1634 aa0.47□□□□□ -2.33
SSR3-208ENST00000496050 A0A087WXM4 84 aa0.47□□□□□ -2.33
SSR3-208ENST00000496050 I3L3M4 83 aa0.47□□□□□ -2.33
SSR3-208ENST00000496050 SPRR1BP22528 89 aa0.47□□□□□ -2.33
SSR3-208ENST00000496050 WFDC9Q8NEX5 89 aa0.47□□□□□ -2.33
SSR3-208ENST00000496050 UGGT2Q9NYU1 1516 aa0.47□□□□□ -2.33
SSR3-208ENST00000496050 CLIP1P30622 1438 aa0.47□□□□□ -2.33
SSR3-208ENST00000496050 ANKRD50Q9ULJ7 1429 aa0.47□□□□□ -2.33
SSR3-208ENST00000496050 SVEP1Q4LDE5 3571 aa0.46□□□□□ -2.34
SSR3-208ENST00000496050 CDH23Q9H251 3354 aa0.46□□□□□ -2.34
SSR3-208ENST00000496050 PTPRQQ9UMZ3 2332 aa0.46□□□□□ -2.34
SSR3-208ENST00000496050 MRPL34Q9BQ48 92 aaKnown RBP0.46□□□□□ -2.34
SSR3-208ENST00000496050 DUOX2Q9NRD8 1548 aa0.46□□□□□ -2.34
SSR3-208ENST00000496050 LRRIQ1Q96JM4 1722 aa0.46□□□□□ -2.34
SSR3-208ENST00000496050 LAMA5O15230 3695 aa0.46□□□□□ -2.34
SSR3-208ENST00000496050 SPENQ96T58 3664 aaKnown RBP0.46□□□□□ -2.34
SSR3-208ENST00000496050 DCHS2Q6V1P9 2916 aa0.46□□□□□ -2.34
SSR3-208ENST00000496050 ZNF831Q5JPB2 1677 aa0.46□□□□□ -2.34
SSR3-208ENST00000496050 UBR3Q6ZT12 1888 aa0.46□□□□□ -2.34
SSR3-208ENST00000496050 KIF20BQ96Q89 1820 aa0.45□□□□□ -2.34
SSR3-208ENST00000496050 CUBNO60494 3623 aa0.45□□□□□ -2.34
SSR3-208ENST00000496050 DNMBPQ6XZF7 1577 aa0.45□□□□□ -2.34
SSR3-208ENST00000496050 LAMA1P25391 3075 aa0.45□□□□□ -2.34
SSR3-208ENST00000496050 MGAQ8IWI9 3026 aa0.45□□□□□ -2.34
SSR3-208ENST00000496050 QSER1Q2KHR3 1735 aa0.45□□□□□ -2.34
SSR3-208ENST00000496050 RPL38P63173 70 aaKnown RBP0.45□□□□□ -2.34
SSR3-208ENST00000496050 NREPQ16612 68 aa0.45□□□□□ -2.34
SSR3-208ENST00000496050 PPRC1Q5VV67 1664 aaKnown RBP0.45□□□□□ -2.34
SSR3-208ENST00000496050 LTN1O94822 1766 aa0.45□□□□□ -2.34
SSR3-208ENST00000496050 SMIM31A0A1B0GVY4 71 aa0.44□□□□□ -2.34
SSR3-208ENST00000496050 CCL22O00626 93 aa0.44□□□□□ -2.34
SSR3-208ENST00000496050 COX6B2Q6YFQ2 88 aa0.44□□□□□ -2.34
SSR3-208ENST00000496050 CHD9Q3L8U1 2897 aa0.44□□□□□ -2.34
SSR3-208ENST00000496050 DNAH7Q8WXX0 4024 aa0.44□□□□□ -2.34
SSR3-208ENST00000496050 NBASA2RRP1 2371 aa0.43□□□□□ -2.34
SSR3-208ENST00000496050 SPTBN1Q01082 2364 aaKnown RBP0.43□□□□□ -2.34
SSR3-208ENST00000496050 ANK2Q01484 3957 aa0.43□□□□□ -2.34
SSR3-208ENST00000496050 HECTD4Q9Y4D8 3996 aa0.43□□□□□ -2.34
SSR3-208ENST00000496050 SCN11AQ9UI33 1791 aa0.43□□□□□ -2.34
SSR3-208ENST00000496050 MYO5CQ9NQX4 1742 aa0.43□□□□□ -2.34
SSR3-208ENST00000496050 IQGAP3Q86VI3 1631 aa0.42□□□□□ -2.34
SSR3-208ENST00000496050 SRRM2Q9UQ35 2752 aaKnown RBP0.42□□□□□ -2.34
SSR3-208ENST00000496050 POLR1AO95602 1720 aaPredicted RBP0.42□□□□□ -2.34
SSR3-208ENST00000496050 FMN2Q9NZ56 1722 aa0.42□□□□□ -2.34
SSR3-208ENST00000496050 SPINK1P00995 79 aa0.42□□□□□ -2.34
SSR3-208ENST00000496050 TRIOO75962 3097 aa0.42□□□□□ -2.34
SSR3-208ENST00000496050 ATMQ13315 3056 aa0.42□□□□□ -2.34
SSR3-208ENST00000496050 ARFGEF2Q9Y6D5 1785 aa0.42□□□□□ -2.34
SSR3-208ENST00000496050 DOT1LQ8TEK3 1739 aa0.41□□□□□ -2.34
SSR3-208ENST00000496050 AKAP6Q13023 2319 aa0.41□□□□□ -2.34
SSR3-208ENST00000496050 SPINK4O60575 86 aa0.41□□□□□ -2.34
SSR3-208ENST00000496050 DEFB105AQ8NG35 78 aa0.41□□□□□ -2.34
SSR3-208ENST00000496050 APLNQ9ULZ1 77 aa0.41□□□□□ -2.34
SSR3-208ENST00000496050 MYCBP2O75592 4640 aa0.41□□□□□ -2.34
SSR3-208ENST00000496050 ZZEF1O43149 2961 aa0.41□□□□□ -2.34
SSR3-208ENST00000496050 PKDREJQ9NTG1 2253 aa0.4□□□□□ -2.34
SSR3-208ENST00000496050 ASXL1Q8IXJ9 1541 aa0.4□□□□□ -2.35
SSR3-208ENST00000496050 A0A087WWC5 75 aa0.4□□□□□ -2.35
SSR3-208ENST00000496050 H3BVH4 76 aa0.4□□□□□ -2.35
SSR3-208ENST00000496050 NDUFA4O00483 81 aa0.4□□□□□ -2.35
SSR3-208ENST00000496050 DEFB109BQ30KR1 87 aa0.4□□□□□ -2.35
SSR3-208ENST00000496050 H1FX-AS1Q4G0G2 97 aa0.4□□□□□ -2.35
SSR3-208ENST00000496050 CDKN2A-AS1Q9UH64 79 aa0.4□□□□□ -2.35
SSR3-208ENST00000496050 ADAMTS12P58397 1594 aa0.4□□□□□ -2.35
SSR3-208ENST00000496050 DIP2AQ14689 1571 aa0.4□□□□□ -2.35
SSR3-208ENST00000496050 ADGRG4Q8IZF6 3080 aa0.39□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms