RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 ANAPC11Q9NYG5 84 aa8.25□□□□□ -1.09
C9orf3-221ENST00000489562 TMEM256-PLSCR3K7ERE1 68 aa8.24□□□□□ -1.09
C9orf3-221ENST00000489562 ABCA13Q86UQ4 5058 aa8.24□□□□□ -1.09
C9orf3-221ENST00000489562 A0A087X002 238 aa8.23□□□□□ -1.09
C9orf3-221ENST00000489562 F8WEM9 126 aa8.22□□□□□ -1.09
C9orf3-221ENST00000489562 GTF2H5Q6ZYL4 71 aa8.22□□□□□ -1.09
C9orf3-221ENST00000489562 PRR26Q8N8Z3 221 aa8.22□□□□□ -1.09
C9orf3-221ENST00000489562 KRTAP29-1A8MX34 341 aaPredicted RBP8.21□□□□□ -1.1
C9orf3-221ENST00000489562 H3BMG7 143 aa8.21□□□□□ -1.1
C9orf3-221ENST00000489562 K7EP34 96 aa8.21□□□□□ -1.1
C9orf3-221ENST00000489562 SMIM29Q86T20 159 aa8.21□□□□□ -1.1
C9orf3-221ENST00000489562 IGLV9-49A0A0B4J1Y8 123 aa8.2□□□□□ -1.1
C9orf3-221ENST00000489562 C9JAW5 83 aa8.2□□□□□ -1.1
C9orf3-221ENST00000489562 BAALC-AS2P0C853 105 aa8.2□□□□□ -1.1
C9orf3-221ENST00000489562 UBE2V1Q13404 147 aa8.2□□□□□ -1.1
C9orf3-221ENST00000489562 KRTAP13-2Q52LG2 175 aa8.2□□□□□ -1.1
C9orf3-221ENST00000489562 C3orf22Q8N5N4 141 aa8.2□□□□□ -1.1
C9orf3-221ENST00000489562 Q8NBF4 154 aa8.2□□□□□ -1.1
C9orf3-221ENST00000489562 TYMSOSQ8TAI1 123 aa8.2□□□□□ -1.1
C9orf3-221ENST00000489562 NDUFV3P56181 108 aaKnown RBP8.19□□□□□ -1.1
C9orf3-221ENST00000489562 C9orf153Q5TBE3 101 aa8.19□□□□□ -1.1
C9orf3-221ENST00000489562 SSBP3-AS1Q7Z2R9 100 aa8.19□□□□□ -1.1
C9orf3-221ENST00000489562 H3BT86 120 aa8.18□□□□□ -1.1
C9orf3-221ENST00000489562 KRTAP10-8P60410 259 aa8.18□□□□□ -1.1
C9orf3-221ENST00000489562 MOBPQ13875 183 aa8.18□□□□□ -1.1
C9orf3-221ENST00000489562 IGLV8-61A0A075B6I0 122 aa8.16□□□□□ -1.1
C9orf3-221ENST00000489562 Q6JHZ5 121 aa8.15□□□□□ -1.1
C9orf3-221ENST00000489562 ANKRD29Q8N6D5 301 aa8.15□□□□□ -1.1
C9orf3-221ENST00000489562 MT1HL1P0DM35 61 aa8.14□□□□□ -1.11
C9orf3-221ENST00000489562 JMJD7-PLA2G4BH0Y9G9 81 aa8.12□□□□□ -1.11
C9orf3-221ENST00000489562 J3QL48 77 aa8.12□□□□□ -1.11
C9orf3-221ENST00000489562 SPAG11AQ6PDA7 123 aa8.11□□□□□ -1.11
C9orf3-221ENST00000489562 MTURNQ8N3F0 131 aa8.11□□□□□ -1.11
C9orf3-221ENST00000489562 LINC00304Q8N9R0 145 aa8.11□□□□□ -1.11
C9orf3-221ENST00000489562 A0A1B0GV90 55 aa8.1□□□□□ -1.11
C9orf3-221ENST00000489562 RBM3P98179 157 aaKnown RBP8.1□□□□□ -1.11
C9orf3-221ENST00000489562 C4orf48Q5BLP8 95 aa8.1□□□□□ -1.11
C9orf3-221ENST00000489562 PRO0461Q9UI25 63 aa8.1□□□□□ -1.11
C9orf3-221ENST00000489562 LRP1Q07954 4544 aaKnown RBP8.09□□□□□ -1.11
C9orf3-221ENST00000489562 F8W1H4 67 aa8.09□□□□□ -1.11
C9orf3-221ENST00000489562 CD164Q04900 197 aa8.09□□□□□ -1.11
C9orf3-221ENST00000489562 IGFL1Q6UW32 110 aa8.09□□□□□ -1.11
C9orf3-221ENST00000489562 MYCBP2O75592 4640 aa8.09□□□□□ -1.11
C9orf3-221ENST00000489562 FAT3Q8TDW7 4589 aa8.08□□□□□ -1.12
C9orf3-221ENST00000489562 SMCPP49901 116 aaPredicted RBP8.07□□□□□ -1.12
C9orf3-221ENST00000489562 OBSCN-AS1Q96MR7 158 aa8.07□□□□□ -1.12
C9orf3-221ENST00000489562 DSCR8Q96T75 97 aa8.07□□□□□ -1.12
C9orf3-221ENST00000489562 DMBT1Q9UGM3 2413 aaPredicted RBP8.07□□□□□ -1.12
C9orf3-221ENST00000489562 TRBV7-4A0A0J9YYF1 115 aa8.06□□□□□ -1.12
C9orf3-221ENST00000489562 SPINK1P00995 79 aa8.06□□□□□ -1.12
C9orf3-221ENST00000489562 C21orf62-AS1Q17RA5 79 aa8.06□□□□□ -1.12
C9orf3-221ENST00000489562 A0A1B0GV72 72 aa8.05□□□□□ -1.12
C9orf3-221ENST00000489562 PDE6GP18545 87 aa8.05□□□□□ -1.12
C9orf3-221ENST00000489562 RPS29P62273 56 aaKnown RBP8.05□□□□□ -1.12
C9orf3-221ENST00000489562 Q6Q795 121 aa8.04□□□□□ -1.12
C9orf3-221ENST00000489562 LOC110117498A0A087WWA1 95 aa8.03□□□□□ -1.12
C9orf3-221ENST00000489562 TEN1Q86WV5 123 aa8.03□□□□□ -1.12
C9orf3-221ENST00000489562 A0A0G2JQZ4 141 aa8.02□□□□□ -1.13
C9orf3-221ENST00000489562 CCKP06307 115 aa8.01□□□□□ -1.13
C9orf3-221ENST00000489562 LIMD2Q9BT23 127 aa8.01□□□□□ -1.13
C9orf3-221ENST00000489562 C14orf132Q9NPU4 83 aa8.01□□□□□ -1.13
C9orf3-221ENST00000489562 TRBV7-7A0A0K0K1E9 115 aa8□□□□□ -1.13
C9orf3-221ENST00000489562 HRCT1Q6UXD1 115 aa8□□□□□ -1.13
C9orf3-221ENST00000489562 A0A1W2PNM2 257 aa7.99□□□□□ -1.13
C9orf3-221ENST00000489562 Q5XG85 94 aa7.99□□□□□ -1.13
C9orf3-221ENST00000489562 Q6ZQT0 140 aa7.99□□□□□ -1.13
C9orf3-221ENST00000489562 TNXBP22105 4242 aa7.99□□□□□ -1.13
C9orf3-221ENST00000489562 A0A1B0GW54 56 aa7.97□□□□□ -1.13
C9orf3-221ENST00000489562 ETDBQ3ZM63 59 aa7.97□□□□□ -1.13
C9orf3-221ENST00000489562 VPS25Q9BRG1 176 aa7.96□□□□□ -1.14
C9orf3-221ENST00000489562 SS18L2Q9UHA2 77 aa7.96□□□□□ -1.14
C9orf3-221ENST00000489562 HERC1Q15751 4861 aa7.95□□□□□ -1.14
C9orf3-221ENST00000489562 A0A087WSZ3 146 aa7.93□□□□□ -1.14
C9orf3-221ENST00000489562 ASB16-AS1Q495Z4 193 aa7.93□□□□□ -1.14
C9orf3-221ENST00000489562 FP248Q71RG6 208 aaPredicted RBP7.87□□□□□ -1.15
C9orf3-221ENST00000489562 C1orf195Q5TG92 126 aa7.86□□□□□ -1.15
C9orf3-221ENST00000489562 RETNLBQ9BQ08 111 aa7.85□□□□□ -1.15
C9orf3-221ENST00000489562 PRR4Q16378 134 aa7.82□□□□□ -1.16
C9orf3-221ENST00000489562 ACYP1P07311 99 aa7.81□□□□□ -1.16
C9orf3-221ENST00000489562 NREPQ16612 68 aa7.81□□□□□ -1.16
C9orf3-221ENST00000489562 LINC00472Q9H8W2 130 aa7.81□□□□□ -1.16
C9orf3-221ENST00000489562 FAM240AA0A1B0GVK7 77 aa7.8□□□□□ -1.16
C9orf3-221ENST00000489562 Q96NJ1 140 aa7.8□□□□□ -1.16
C9orf3-221ENST00000489562 IGLV7-46A0A075B6I9 117 aa7.79□□□□□ -1.16
C9orf3-221ENST00000489562 J3KT08 172 aa7.79□□□□□ -1.16
C9orf3-221ENST00000489562 J3QR89 54 aa7.79□□□□□ -1.16
C9orf3-221ENST00000489562 UBL5Q9BZL1 73 aa7.79□□□□□ -1.16
C9orf3-221ENST00000489562 LINC00846Q9NV44 126 aa7.77□□□□□ -1.17
C9orf3-221ENST00000489562 IGKV4-1P06312 121 aa7.76□□□□□ -1.17
C9orf3-221ENST00000489562 Q6ZVQ6 151 aa7.76□□□□□ -1.17
C9orf3-221ENST00000489562 SIGMAR1Q99720 223 aa7.76□□□□□ -1.17
C9orf3-221ENST00000489562 UBR4Q5T4S7 5183 aa7.75□□□□□ -1.17
C9orf3-221ENST00000489562 TPRXLQ17RH7 258 aa7.73□□□□□ -1.17
C9orf3-221ENST00000489562 DEFB116Q30KQ4 102 aa7.73□□□□□ -1.17
C9orf3-221ENST00000489562 BPY2O14599 106 aa7.72□□□□□ -1.17
C9orf3-221ENST00000489562 NDUFB1O75438 58 aa7.71□□□□□ -1.18
C9orf3-221ENST00000489562 A8MWP4 228 aa7.69□□□□□ -1.18
C9orf3-221ENST00000489562 K7ERU9 68 aa7.69□□□□□ -1.18
C9orf3-221ENST00000489562 KRTAP13-3Q3SY46 172 aa7.69□□□□□ -1.18
C9orf3-221ENST00000489562 A0A1B0GVX0 72 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms