RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 PHF5AQ7RTV0 110 aaKnown RBP12.04□□□□□ -0.48
CCM2-216ENST00000488727 KRTAP4-16G5E9R7 235 aaPredicted RBP12.03□□□□□ -0.48
CCM2-216ENST00000488727 HIST1H4AP62805 103 aaKnown RBP12.03□□□□□ -0.48
CCM2-216ENST00000488727 IGKV3D-7A0A0C4DH55 119 aa12.03□□□□□ -0.48
CCM2-216ENST00000488727 UBL5Q9BZL1 73 aa12.03□□□□□ -0.48
CCM2-216ENST00000488727 DHRS4-AS1Q9P1J3 65 aa12.01□□□□□ -0.49
CCM2-216ENST00000488727 B5MCH6 92 aa12□□□□□ -0.49
CCM2-216ENST00000488727 Q5VSD8 79 aa12□□□□□ -0.49
CCM2-216ENST00000488727 Q6ZRX8 168 aa12□□□□□ -0.49
CCM2-216ENST00000488727 MRPL55Q7Z7F7 128 aaKnown RBP12□□□□□ -0.49
CCM2-216ENST00000488727 KRTAP11-1Q8IUC1 163 aa11.98□□□□□ -0.49
CCM2-216ENST00000488727 KRTAP4-5Q9BYR2 181 aa11.98□□□□□ -0.49
CCM2-216ENST00000488727 RPL37AP8A6NKH3 93 aa11.97□□□□□ -0.49
CCM2-216ENST00000488727 FAM229AH3BQW9 127 aa11.97□□□□□ -0.49
CCM2-216ENST00000488727 ETDCA0A1B0GVM5 59 aa11.97□□□□□ -0.49
CCM2-216ENST00000488727 CCDC179H3BU77 68 aa11.97□□□□□ -0.49
CCM2-216ENST00000488727 VPS13BQ7Z7G8 4022 aa11.96□□□□□ -0.49
CCM2-216ENST00000488727 KRTAP10-4P60372 401 aaPredicted RBP11.96□□□□□ -0.49
CCM2-216ENST00000488727 ATOX1O00244 68 aa11.94□□□□□ -0.5
CCM2-216ENST00000488727 LINC01547P58512 204 aaPredicted RBP11.94□□□□□ -0.5
CCM2-216ENST00000488727 RPL37AP61513 92 aaKnown RBP11.94□□□□□ -0.5
CCM2-216ENST00000488727 Q9BRP9 147 aa11.94□□□□□ -0.5
CCM2-216ENST00000488727 Q8N377 158 aa11.93□□□□□ -0.5
CCM2-216ENST00000488727 PLA2G1BP04054 148 aaKnown RBP11.92□□□□□ -0.5
CCM2-216ENST00000488727 Q6ZVQ6 151 aa11.92□□□□□ -0.5
CCM2-216ENST00000488727 SRRM2Q9UQ35 2752 aaKnown RBP11.92□□□□□ -0.5
CCM2-216ENST00000488727 UBE2BP63146 152 aa11.91□□□□□ -0.5
CCM2-216ENST00000488727 PSORS1C2Q9UIG4 136 aa11.91□□□□□ -0.5
CCM2-216ENST00000488727 IGLV5-48A0A075B6I7 105 aa11.9□□□□□ -0.5
CCM2-216ENST00000488727 REG3GQ6UW15 175 aa11.9□□□□□ -0.5
CCM2-216ENST00000488727 A0A087WVE0 104 aa11.89□□□□□ -0.51
CCM2-216ENST00000488727 CXCL6P80162 114 aa11.87□□□□□ -0.51
CCM2-216ENST00000488727 UQCRQO14949 82 aa11.86□□□□□ -0.51
CCM2-216ENST00000488727 C3orf22Q8N5N4 141 aa11.86□□□□□ -0.51
CCM2-216ENST00000488727 DEFB105AQ8NG35 78 aa11.86□□□□□ -0.51
CCM2-216ENST00000488727 ABCA13Q86UQ4 5058 aa11.85□□□□□ -0.51
CCM2-216ENST00000488727 C1orf137Q5JT78 98 aa11.85□□□□□ -0.51
CCM2-216ENST00000488727 COX7CP15954 63 aa11.84□□□□□ -0.51
CCM2-216ENST00000488727 FAM19A1Q7Z5A9 133 aa11.84□□□□□ -0.51
CCM2-216ENST00000488727 A0A1B0GW54 56 aa11.82□□□□□ -0.52
CCM2-216ENST00000488727 ST20-AS1Q8NBB2 130 aa11.82□□□□□ -0.52
CCM2-216ENST00000488727 ERC2-IT1O76042 136 aa11.81□□□□□ -0.52
CCM2-216ENST00000488727 SERP2Q8N6R1 65 aa11.79□□□□□ -0.52
CCM2-216ENST00000488727 IGLV7-43P04211 117 aa11.78□□□□□ -0.52
CCM2-216ENST00000488727 BCE1O60756 84 aa11.77□□□□□ -0.52
CCM2-216ENST00000488727 C9orf153Q5TBE3 101 aa11.77□□□□□ -0.53
CCM2-216ENST00000488727 PCLOQ9Y6V0 5065 aa11.77□□□□□ -0.53
CCM2-216ENST00000488727 PKHD1L1Q86WI1 4243 aa11.74□□□□□ -0.53
CCM2-216ENST00000488727 H0Y9J4 135 aa11.74□□□□□ -0.53
CCM2-216ENST00000488727 CRYGAP11844 174 aa11.74□□□□□ -0.53
CCM2-216ENST00000488727 SMIM29Q86T20 159 aa11.74□□□□□ -0.53
CCM2-216ENST00000488727 Q8NBF4 154 aa11.73□□□□□ -0.53
CCM2-216ENST00000488727 FLG2Q5D862 2391 aaPredicted RBP11.73□□□□□ -0.53
CCM2-216ENST00000488727 A0A1W2PNM2 257 aa11.72□□□□□ -0.53
CCM2-216ENST00000488727 PRLHP81277 87 aa11.72□□□□□ -0.53
CCM2-216ENST00000488727 NREPQ16612 68 aa11.72□□□□□ -0.53
CCM2-216ENST00000488727 SS18L2Q9UHA2 77 aa11.72□□□□□ -0.53
CCM2-216ENST00000488727 SPINK6Q6UWN8 80 aa11.71□□□□□ -0.54
CCM2-216ENST00000488727 KRTAP13-1Q8IUC0 172 aa11.71□□□□□ -0.54
CCM2-216ENST00000488727 SPRR4Q96PI1 79 aa11.71□□□□□ -0.54
CCM2-216ENST00000488727 ZNF861PO60384 105 aa11.7□□□□□ -0.54
CCM2-216ENST00000488727 IGLV8-61A0A075B6I0 122 aa11.68□□□□□ -0.54
CCM2-216ENST00000488727 F8WEM9 126 aa11.68□□□□□ -0.54
CCM2-216ENST00000488727 UBE2AP49459 152 aa11.68□□□□□ -0.54
CCM2-216ENST00000488727 MYCBP2O75592 4640 aa11.67□□□□□ -0.54
CCM2-216ENST00000488727 SMIM20Q8N5G0 67 aa11.66□□□□□ -0.54
CCM2-216ENST00000488727 SPRR1BP22528 89 aa11.66□□□□□ -0.54
CCM2-216ENST00000488727 HIGD2AQ9BW72 106 aa11.66□□□□□ -0.54
CCM2-216ENST00000488727 BPY2O14599 106 aa11.64□□□□□ -0.55
CCM2-216ENST00000488727 TRAV7A0A075B6U4 112 aa11.63□□□□□ -0.55
CCM2-216ENST00000488727 IGKV4-1P06312 121 aa11.63□□□□□ -0.55
CCM2-216ENST00000488727 LRP1Q07954 4544 aaKnown RBP11.62□□□□□ -0.55
CCM2-216ENST00000488727 IGFL1Q6UW32 110 aa11.6□□□□□ -0.55
CCM2-216ENST00000488727 FAT3Q8TDW7 4589 aa11.57□□□□□ -0.56
CCM2-216ENST00000488727 KRTAP1-4P0C5Y4 121 aa11.56□□□□□ -0.56
CCM2-216ENST00000488727 Q8N9L7 120 aa11.55□□□□□ -0.56
CCM2-216ENST00000488727 CYSTM1Q9H1C7 97 aa11.55□□□□□ -0.56
CCM2-216ENST00000488727 KRTAP29-1A8MX34 341 aaPredicted RBP11.52□□□□□ -0.56
CCM2-216ENST00000488727 OXTP01178 125 aa11.52□□□□□ -0.57
CCM2-216ENST00000488727 TMEM258P61165 79 aa11.51□□□□□ -0.57
CCM2-216ENST00000488727 DSCR10P59022 87 aa11.49□□□□□ -0.57
CCM2-216ENST00000488727 ANAPC11Q9NYG5 84 aa11.49□□□□□ -0.57
CCM2-216ENST00000488727 A0A0G2JQZ4 141 aa11.48□□□□□ -0.57
CCM2-216ENST00000488727 C20orf197Q8N268 126 aa11.48□□□□□ -0.57
CCM2-216ENST00000488727 MT1HL1P0DM35 61 aa11.46□□□□□ -0.57
CCM2-216ENST00000488727 KLKP1Q107X0 134 aa11.46□□□□□ -0.58
CCM2-216ENST00000488727 PRR26Q8N8Z3 221 aa11.46□□□□□ -0.58
CCM2-216ENST00000488727 A0A087WSZ3 146 aa11.44□□□□□ -0.58
CCM2-216ENST00000488727 A0A087X002 238 aa11.43□□□□□ -0.58
CCM2-216ENST00000488727 OCR1Q9BZK8 76 aa11.43□□□□□ -0.58
CCM2-216ENST00000488727 ZNF706Q9Y5V0 76 aaPredicted RBP11.43□□□□□ -0.58
CCM2-216ENST00000488727 LINC00483Q53H64 154 aa11.43□□□□□ -0.58
CCM2-216ENST00000488727 KRTAP10-8P60410 259 aa11.42□□□□□ -0.58
CCM2-216ENST00000488727 J3QL48 77 aa11.41□□□□□ -0.58
CCM2-216ENST00000488727 TNXBP22105 4242 aa11.41□□□□□ -0.58
CCM2-216ENST00000488727 K7EQZ3 153 aa11.4□□□□□ -0.58
CCM2-216ENST00000488727 DMBT1Q9UGM3 2413 aaPredicted RBP11.4□□□□□ -0.58
CCM2-216ENST00000488727 FAM229BQ4G0N7 80 aa11.39□□□□□ -0.59
CCM2-216ENST00000488727 KRTAP13-2Q52LG2 175 aa11.38□□□□□ -0.59
CCM2-216ENST00000488727 H7BZZ5 65 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 220.9 ms