RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 LYRM7Q5U5X0 104 aa4.88□□□□□ -1.63
SF3A1-208ENST00000485618 LINC00304Q8N9R0 145 aa4.88□□□□□ -1.63
SF3A1-208ENST00000485618 SNHG12Q9BXW3 62 aa4.88□□□□□ -1.63
SF3A1-208ENST00000485618 IGLV5-48A0A075B6I7 105 aa4.87□□□□□ -1.63
SF3A1-208ENST00000485618 K7ERJ3 54 aa4.87□□□□□ -1.63
SF3A1-208ENST00000485618 Q6ZQY7 126 aa4.87□□□□□ -1.63
SF3A1-208ENST00000485618 Q8NBF4 154 aa4.87□□□□□ -1.63
SF3A1-208ENST00000485618 TRIAP1O43715 76 aa4.86□□□□□ -1.63
SF3A1-208ENST00000485618 SPINK1P00995 79 aa4.86□□□□□ -1.63
SF3A1-208ENST00000485618 MOBPQ13875 183 aa4.86□□□□□ -1.63
SF3A1-208ENST00000485618 BATFQ16520 125 aa4.86□□□□□ -1.63
SF3A1-208ENST00000485618 KRTAP13-2Q52LG2 175 aa4.86□□□□□ -1.63
SF3A1-208ENST00000485618 TSPAN13O95857 204 aa4.85□□□□□ -1.63
SF3A1-208ENST00000485618 TNXBP22105 4242 aa4.84□□□□□ -1.63
SF3A1-208ENST00000485618 Q8N377 158 aa4.84□□□□□ -1.63
SF3A1-208ENST00000485618 C3orf22Q8N5N4 141 aa4.84□□□□□ -1.63
SF3A1-208ENST00000485618 TMEM256-PLSCR3K7ERE1 68 aa4.83□□□□□ -1.64
SF3A1-208ENST00000485618 LCE2DQ5TA82 110 aaPredicted RBP4.83□□□□□ -1.64
SF3A1-208ENST00000485618 Q6JHZ5 121 aa4.83□□□□□ -1.64
SF3A1-208ENST00000485618 ORMDL1Q9P0S3 153 aa4.83□□□□□ -1.64
SF3A1-208ENST00000485618 MUC2Q02817 5179 aa4.83□□□□□ -1.64
SF3A1-208ENST00000485618 TRACP01848 142 aa4.82□□□□□ -1.64
SF3A1-208ENST00000485618 FABP2P12104 132 aa4.82□□□□□ -1.64
SF3A1-208ENST00000485618 RPS29P62273 56 aaKnown RBP4.82□□□□□ -1.64
SF3A1-208ENST00000485618 CD164Q04900 197 aa4.82□□□□□ -1.64
SF3A1-208ENST00000485618 ATXN8Q156A1 80 aa4.82□□□□□ -1.64
SF3A1-208ENST00000485618 TRBV20-1A0A075B6N2 111 aa4.81□□□□□ -1.64
SF3A1-208ENST00000485618 LINC01547P58512 204 aaPredicted RBP4.81□□□□□ -1.64
SF3A1-208ENST00000485618 CLEC2BQ92478 149 aa4.81□□□□□ -1.64
SF3A1-208ENST00000485618 LIMD2Q9BT23 127 aa4.81□□□□□ -1.64
SF3A1-208ENST00000485618 COL5A1-AS1Q5SY13 56 aa4.8□□□□□ -1.64
SF3A1-208ENST00000485618 SMIM29Q86T20 159 aa4.8□□□□□ -1.64
SF3A1-208ENST00000485618 FAM218AQ96MZ4 157 aa4.8□□□□□ -1.64
SF3A1-208ENST00000485618 LST1O00453 97 aa4.79□□□□□ -1.64
SF3A1-208ENST00000485618 NDUFV3P56181 108 aaKnown RBP4.79□□□□□ -1.64
SF3A1-208ENST00000485618 PRR4Q16378 134 aa4.79□□□□□ -1.64
SF3A1-208ENST00000485618 IGLV8-61A0A075B6I0 122 aa4.78□□□□□ -1.64
SF3A1-208ENST00000485618 C9orf118A6NHY6 69 aa4.78□□□□□ -1.64
SF3A1-208ENST00000485618 H3BMG7 143 aa4.78□□□□□ -1.64
SF3A1-208ENST00000485618 H3BUT2 72 aa4.78□□□□□ -1.64
SF3A1-208ENST00000485618 TCL1BO95988 128 aa4.78□□□□□ -1.64
SF3A1-208ENST00000485618 UBE2V1Q13404 147 aa4.78□□□□□ -1.64
SF3A1-208ENST00000485618 FP248Q71RG6 208 aaPredicted RBP4.77□□□□□ -1.65
SF3A1-208ENST00000485618 PCP4L1A6NKN8 68 aa4.76□□□□□ -1.65
SF3A1-208ENST00000485618 BAALC-AS2P0C853 105 aa4.76□□□□□ -1.65
SF3A1-208ENST00000485618 HRCT1Q6UXD1 115 aa4.76□□□□□ -1.65
SF3A1-208ENST00000485618 ANKRD29Q8N6D5 301 aa4.76□□□□□ -1.65
SF3A1-208ENST00000485618 A0A1W2PPM0 123 aa4.75□□□□□ -1.65
SF3A1-208ENST00000485618 NAA38Q9BRA0 125 aaKnown RBP4.75□□□□□ -1.65
SF3A1-208ENST00000485618 JMJD7-PLA2G4BH0Y9G9 81 aa4.74□□□□□ -1.65
SF3A1-208ENST00000485618 TAX1BP3O14907 124 aa4.74□□□□□ -1.65
SF3A1-208ENST00000485618 RBM3P98179 157 aaKnown RBP4.74□□□□□ -1.65
SF3A1-208ENST00000485618 C21orf62-AS1Q17RA5 79 aa4.74□□□□□ -1.65
SF3A1-208ENST00000485618 Q5XG85 94 aa4.74□□□□□ -1.65
SF3A1-208ENST00000485618 IGFL1Q6UW32 110 aa4.74□□□□□ -1.65
SF3A1-208ENST00000485618 TEN1Q86WV5 123 aa4.74□□□□□ -1.65
SF3A1-208ENST00000485618 DSCR8Q96T75 97 aa4.74□□□□□ -1.65
SF3A1-208ENST00000485618 SS18L2Q9UHA2 77 aa4.74□□□□□ -1.65
SF3A1-208ENST00000485618 IGLV7-46A0A075B6I9 117 aa4.73□□□□□ -1.65
SF3A1-208ENST00000485618 KRTAP3-3Q9BYR6 98 aa4.73□□□□□ -1.65
SF3A1-208ENST00000485618 KRTAP3-2Q9BYR7 98 aa4.73□□□□□ -1.65
SF3A1-208ENST00000485618 TRBV7-7A0A0K0K1E9 115 aa4.72□□□□□ -1.65
SF3A1-208ENST00000485618 C9JAW5 83 aa4.72□□□□□ -1.65
SF3A1-208ENST00000485618 PDE6GP18545 87 aa4.72□□□□□ -1.65
SF3A1-208ENST00000485618 Q6Q795 121 aa4.71□□□□□ -1.66
SF3A1-208ENST00000485618 SPCS1Q9Y6A9 102 aa4.71□□□□□ -1.66
SF3A1-208ENST00000485618 TRBV7-4A0A0J9YYF1 115 aa4.7□□□□□ -1.66
SF3A1-208ENST00000485618 H3BT86 120 aa4.7□□□□□ -1.66
SF3A1-208ENST00000485618 GTF2H5Q6ZYL4 71 aa4.7□□□□□ -1.66
SF3A1-208ENST00000485618 RETNLBQ9BQ08 111 aa4.7□□□□□ -1.66
SF3A1-208ENST00000485618 FSIP2Q5CZC0 6907 aa4.7□□□□□ -1.66
SF3A1-208ENST00000485618 A0A1B0GW54 56 aa4.69□□□□□ -1.66
SF3A1-208ENST00000485618 CCKP06307 115 aa4.69□□□□□ -1.66
SF3A1-208ENST00000485618 ASB16-AS1Q495Z4 193 aa4.69□□□□□ -1.66
SF3A1-208ENST00000485618 LPAP08519 4548 aa4.69□□□□□ -1.66
SF3A1-208ENST00000485618 TPRXLQ17RH7 258 aa4.68□□□□□ -1.66
SF3A1-208ENST00000485618 CDIP1Q9H305 208 aa4.68□□□□□ -1.66
SF3A1-208ENST00000485618 A0A0G2JQZ4 141 aa4.67□□□□□ -1.66
SF3A1-208ENST00000485618 A0A1B0GV72 72 aa4.67□□□□□ -1.66
SF3A1-208ENST00000485618 VPS25Q9BRG1 176 aa4.67□□□□□ -1.66
SF3A1-208ENST00000485618 A0A087WSZ3 146 aa4.66□□□□□ -1.66
SF3A1-208ENST00000485618 C1orf195Q5TG92 126 aa4.66□□□□□ -1.66
SF3A1-208ENST00000485618 LOC110117498A0A087WWA1 95 aa4.65□□□□□ -1.67
SF3A1-208ENST00000485618 A0A0U1RQV1 116 aa4.65□□□□□ -1.67
SF3A1-208ENST00000485618 K7EP34 96 aa4.65□□□□□ -1.67
SF3A1-208ENST00000485618 A0A1W2PNM2 257 aa4.64□□□□□ -1.67
SF3A1-208ENST00000485618 F8W1H4 67 aa4.63□□□□□ -1.67
SF3A1-208ENST00000485618 OBSCN-AS1Q96MR7 158 aa4.63□□□□□ -1.67
SF3A1-208ENST00000485618 Q6ZQT0 140 aa4.62□□□□□ -1.67
SF3A1-208ENST00000485618 J3KT08 172 aa4.61□□□□□ -1.67
SF3A1-208ENST00000485618 KRTAP13-3Q3SY46 172 aa4.61□□□□□ -1.67
SF3A1-208ENST00000485618 C14orf132Q9NPU4 83 aa4.61□□□□□ -1.67
SF3A1-208ENST00000485618 IGKV4-1P06312 121 aa4.59□□□□□ -1.67
SF3A1-208ENST00000485618 SEC61BP60468 96 aaKnown RBP4.59□□□□□ -1.67
SF3A1-208ENST00000485618 NREPQ16612 68 aa4.59□□□□□ -1.67
SF3A1-208ENST00000485618 MTURNQ8N3F0 131 aa4.59□□□□□ -1.67
SF3A1-208ENST00000485618 CRCT1Q9UGL9 99 aa4.59□□□□□ -1.67
SF3A1-208ENST00000485618 NDUFB1O75438 58 aa4.58□□□□□ -1.68
SF3A1-208ENST00000485618 SIGMAR1Q99720 223 aa4.58□□□□□ -1.68
SF3A1-208ENST00000485618 C9orf92A6NGG3 77 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms