RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 CD163L1Q9NR16 1453 aa-0.29□□□□□ -2.46
UPF3B-203ENST00000478840 NBASA2RRP1 2371 aa-0.3□□□□□ -2.46
UPF3B-203ENST00000478840 LYNX1G3V0Z9 82 aa-0.3□□□□□ -2.46
UPF3B-203ENST00000478840 PCLOQ9Y6V0 5065 aa-0.3□□□□□ -2.46
UPF3B-203ENST00000478840 CREBBPQ92793 2442 aa-0.3□□□□□ -2.46
UPF3B-203ENST00000478840 RYR3Q15413 4870 aa-0.31□□□□□ -2.46
UPF3B-203ENST00000478840 THOC2Q8NI27 1593 aaKnown RBP-0.31□□□□□ -2.46
UPF3B-203ENST00000478840 AKAP13Q12802 2813 aa-0.31□□□□□ -2.46
UPF3B-203ENST00000478840 SRRM2Q9UQ35 2752 aaKnown RBP-0.32□□□□□ -2.46
UPF3B-203ENST00000478840 H0YAA0 97 aa-0.32□□□□□ -2.46
UPF3B-203ENST00000478840 NBEAL1Q6ZS30 2694 aa-0.32□□□□□ -2.46
UPF3B-203ENST00000478840 MAP1AP78559 2803 aaPredicted RBP-0.32□□□□□ -2.46
UPF3B-203ENST00000478840 DDX60LQ5H9U9 1706 aaKnown RBP-0.33□□□□□ -2.46
UPF3B-203ENST00000478840 PLCH1Q4KWH8 1693 aa-0.33□□□□□ -2.46
UPF3B-203ENST00000478840 RALGAPBQ86X10 1494 aa-0.33□□□□□ -2.46
UPF3B-203ENST00000478840 HERC2O95714 4834 aa-0.33□□□□□ -2.46
UPF3B-203ENST00000478840 HFM1A2PYH4 1435 aa-0.33□□□□□ -2.46
UPF3B-203ENST00000478840 LRP1BQ9NZR2 4599 aa-0.33□□□□□ -2.46
UPF3B-203ENST00000478840 ABCA8O94911 1581 aa-0.34□□□□□ -2.46
UPF3B-203ENST00000478840 UBL5Q9BZL1 73 aa-0.34□□□□□ -2.46
UPF3B-203ENST00000478840 KCNQ1DNQ9H478 68 aa-0.34□□□□□ -2.46
UPF3B-203ENST00000478840 SETD2Q9BYW2 2564 aaPredicted RBP-0.35□□□□□ -2.46
UPF3B-203ENST00000478840 KRTAP6-2Q3LI66 62 aa-0.35□□□□□ -2.47
UPF3B-203ENST00000478840 DEFA5Q01523 94 aa-0.36□□□□□ -2.47
UPF3B-203ENST00000478840 RICTORQ6R327 1708 aa-0.36□□□□□ -2.47
UPF3B-203ENST00000478840 PDZD2O15018 2839 aa-0.37□□□□□ -2.47
UPF3B-203ENST00000478840 HYDINQ4G0P3 5121 aa-0.37□□□□□ -2.47
UPF3B-203ENST00000478840 USH2AO75445 5202 aa-0.37□□□□□ -2.47
UPF3B-203ENST00000478840 RYR1P21817 5038 aa-0.38□□□□□ -2.47
UPF3B-203ENST00000478840 C9orf92A6NGG3 77 aa-0.38□□□□□ -2.47
UPF3B-203ENST00000478840 SPRR2EP22531 72 aa-0.38□□□□□ -2.47
UPF3B-203ENST00000478840 SPTBN4Q9H254 2564 aa-0.38□□□□□ -2.47
UPF3B-203ENST00000478840 PKHD1P08F94 4074 aa-0.38□□□□□ -2.47
UPF3B-203ENST00000478840 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.38□□□□□ -2.47
UPF3B-203ENST00000478840 LMTK2Q8IWU2 1503 aa-0.38□□□□□ -2.47
UPF3B-203ENST00000478840 KIAA1109Q2LD37 5005 aa-0.39□□□□□ -2.47
UPF3B-203ENST00000478840 UBR4Q5T4S7 5183 aa-0.39□□□□□ -2.47
UPF3B-203ENST00000478840 H3BVH4 76 aa-0.39□□□□□ -2.47
UPF3B-203ENST00000478840 STARD9Q9P2P6 4700 aa-0.4□□□□□ -2.47
UPF3B-203ENST00000478840 IAPPP10997 89 aa-0.4□□□□□ -2.47
UPF3B-203ENST00000478840 SONP18583 2426 aaKnown RBP-0.4□□□□□ -2.47
UPF3B-203ENST00000478840 ITSN1Q15811 1721 aa-0.41□□□□□ -2.47
UPF3B-203ENST00000478840 DEFB130BP0DP73 79 aa-0.41□□□□□ -2.48
UPF3B-203ENST00000478840 DEFB130AP0DP74 79 aa-0.41□□□□□ -2.48
UPF3B-203ENST00000478840 PRRC2CQ9Y520 2896 aaKnown RBP-0.42□□□□□ -2.48
UPF3B-203ENST00000478840 TNRC18O15417 2968 aaPredicted RBP-0.42□□□□□ -2.48
UPF3B-203ENST00000478840 PRLHP81277 87 aa-0.42□□□□□ -2.48
UPF3B-203ENST00000478840 KRTAP19-7Q3SYF9 63 aa-0.42□□□□□ -2.48
UPF3B-203ENST00000478840 ENHOQ6UWT2 76 aa-0.42□□□□□ -2.48
UPF3B-203ENST00000478840 SPG11Q96JI7 2443 aa-0.42□□□□□ -2.48
UPF3B-203ENST00000478840 DSPP15924 2871 aaKnown RBP-0.42□□□□□ -2.48
UPF3B-203ENST00000478840 EPPK1P58107 5090 aaKnown RBP-0.42□□□□□ -2.48
UPF3B-203ENST00000478840 SVEP1Q4LDE5 3571 aa-0.42□□□□□ -2.48
UPF3B-203ENST00000478840 SMCO4Q9NRQ5 59 aa-0.43□□□□□ -2.48
UPF3B-203ENST00000478840 LAMA5O15230 3695 aa-0.43□□□□□ -2.48
UPF3B-203ENST00000478840 KRTAP20-2Q3LI61 65 aa-0.44□□□□□ -2.48
UPF3B-203ENST00000478840 FLGP20930 4061 aaPredicted RBP-0.44□□□□□ -2.48
UPF3B-203ENST00000478840 NF1P21359 2839 aa-0.45□□□□□ -2.48
UPF3B-203ENST00000478840 RNF17Q9BXT8 1623 aaKnown RBP-0.45□□□□□ -2.48
UPF3B-203ENST00000478840 BIRC6Q9NR09 4857 aa-0.45□□□□□ -2.48
UPF3B-203ENST00000478840 PDCD5O14737 125 aa-0.45□□□□□ -2.48
UPF3B-203ENST00000478840 TGP01266 2768 aa-0.45□□□□□ -2.48
UPF3B-203ENST00000478840 EPG5Q9HCE0 2579 aa-0.46□□□□□ -2.48
UPF3B-203ENST00000478840 TJP1Q07157 1748 aa-0.46□□□□□ -2.48
UPF3B-203ENST00000478840 ETDCA0A1B0GVM5 59 aa-0.46□□□□□ -2.48
UPF3B-203ENST00000478840 H3BNG1 76 aa-0.46□□□□□ -2.48
UPF3B-203ENST00000478840 ATXN8Q156A1 80 aa-0.46□□□□□ -2.48
UPF3B-203ENST00000478840 DOPEY1Q5JWR5 2465 aa-0.46□□□□□ -2.48
UPF3B-203ENST00000478840 ZC3H13Q5T200 1668 aaKnown RBP-0.46□□□□□ -2.48
UPF3B-203ENST00000478840 RNF213Q63HN8 5207 aa-0.47□□□□□ -2.48
UPF3B-203ENST00000478840 CRIP1P50238 77 aa-0.47□□□□□ -2.48
UPF3B-203ENST00000478840 RYR2Q92736 4967 aa-0.47□□□□□ -2.48
UPF3B-203ENST00000478840 DUOX2Q9NRD8 1548 aa-0.48□□□□□ -2.49
UPF3B-203ENST00000478840 INO80Q9ULG1 1556 aaPredicted RBP-0.48□□□□□ -2.49
UPF3B-203ENST00000478840 MT4P47944 62 aa-0.48□□□□□ -2.49
UPF3B-203ENST00000478840 DEFB114Q30KQ6 69 aa-0.48□□□□□ -2.49
UPF3B-203ENST00000478840 KIAA0586Q9BVV6 1533 aa-0.48□□□□□ -2.49
UPF3B-203ENST00000478840 MT1AP04731 61 aa-0.49□□□□□ -2.49
UPF3B-203ENST00000478840 LYSTQ99698 3801 aa-0.49□□□□□ -2.49
UPF3B-203ENST00000478840 UGGT2Q9NYU1 1516 aa-0.49□□□□□ -2.49
UPF3B-203ENST00000478840 PKD1P98161 4303 aa-0.5□□□□□ -2.49
UPF3B-203ENST00000478840 MYO5CQ9NQX4 1742 aa-0.5□□□□□ -2.49
UPF3B-203ENST00000478840 DIP2AQ14689 1571 aa-0.51□□□□□ -2.49
UPF3B-203ENST00000478840 MXRA5Q9NR99 2828 aa-0.51□□□□□ -2.49
UPF3B-203ENST00000478840 CDC42BPGQ6DT37 1551 aa-0.52□□□□□ -2.49
UPF3B-203ENST00000478840 KRTAP19-8Q3LI54 63 aa-0.52□□□□□ -2.49
UPF3B-203ENST00000478840 DNHD1Q96M86 4753 aa-0.53□□□□□ -2.49
UPF3B-203ENST00000478840 NBPF19A0A087WUL8 3843 aa-0.53□□□□□ -2.49
UPF3B-203ENST00000478840 HIVEP1P15822 2718 aa-0.53□□□□□ -2.49
UPF3B-203ENST00000478840 PARP4Q9UKK3 1724 aaKnown RBP-0.53□□□□□ -2.49
UPF3B-203ENST00000478840 LRRIQ1Q96JM4 1722 aa-0.54□□□□□ -2.5
UPF3B-203ENST00000478840 NHSQ6T4R5 1651 aa-0.54□□□□□ -2.5
UPF3B-203ENST00000478840 LAMA2P24043 3122 aaKnown RBP-0.54□□□□□ -2.5
UPF3B-203ENST00000478840 FAT3Q8TDW7 4589 aa-0.54□□□□□ -2.5
UPF3B-203ENST00000478840 IQGAP3Q86VI3 1631 aa-0.55□□□□□ -2.5
UPF3B-203ENST00000478840 SPRR2FQ96RM1 72 aa-0.55□□□□□ -2.5
UPF3B-203ENST00000478840 GNG13Q9P2W3 67 aa-0.55□□□□□ -2.5
UPF3B-203ENST00000478840 HILPDAQ9Y5L2 63 aa-0.55□□□□□ -2.5
UPF3B-203ENST00000478840 S4R3F8 94 aa-0.55□□□□□ -2.5
UPF3B-203ENST00000478840 MTORP42345 2549 aa-0.55□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms