RNA–Protein interactions for RNA: ENST00000460573.5

C9orf3-209, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-209ENST00000460573 UBR4Q5T4S7 5183 aa13.17□□□□□ -0.3
C9orf3-209ENST00000460573 TEX49A0A1B0GTD5 131 aa13.17□□□□□ -0.3
C9orf3-209ENST00000460573 SNCGO76070 127 aa13.17□□□□□ -0.3
C9orf3-209ENST00000460573 IGLV5-48A0A075B6I7 105 aa13.15□□□□□ -0.3
C9orf3-209ENST00000460573 DEFB105AQ8NG35 78 aa13.14□□□□□ -0.31
C9orf3-209ENST00000460573 LAMTOR3Q9UHA4 124 aa13.14□□□□□ -0.31
C9orf3-209ENST00000460573 IGLV9-49A0A0B4J1Y8 123 aa13.13□□□□□ -0.31
C9orf3-209ENST00000460573 ATXN8Q156A1 80 aa13.13□□□□□ -0.31
C9orf3-209ENST00000460573 SSBP3-AS1Q7Z2R9 100 aa13.13□□□□□ -0.31
C9orf3-209ENST00000460573 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.12□□□□□ -0.31
C9orf3-209ENST00000460573 A0A1B0GX51 115 aa13.11□□□□□ -0.31
C9orf3-209ENST00000460573 TCL1BO95988 128 aa13.11□□□□□ -0.31
C9orf3-209ENST00000460573 LINC01547P58512 204 aaPredicted RBP13.11□□□□□ -0.31
C9orf3-209ENST00000460573 LINC00304Q8N9R0 145 aa13.11□□□□□ -0.31
C9orf3-209ENST00000460573 Q6ZQY7 126 aa13.1□□□□□ -0.31
C9orf3-209ENST00000460573 MOBPQ13875 183 aa13.09□□□□□ -0.31
C9orf3-209ENST00000460573 LST1O00453 97 aa13.08□□□□□ -0.32
C9orf3-209ENST00000460573 SPAG11AQ6PDA7 123 aa13.08□□□□□ -0.32
C9orf3-209ENST00000460573 H3BMG7 143 aa13.07□□□□□ -0.32
C9orf3-209ENST00000460573 OCIAD2Q56VL3 154 aa13.07□□□□□ -0.32
C9orf3-209ENST00000460573 C9orf153Q5TBE3 101 aa13.07□□□□□ -0.32
C9orf3-209ENST00000460573 Q8N377 158 aa13.07□□□□□ -0.32
C9orf3-209ENST00000460573 Q8NBF4 154 aa13.07□□□□□ -0.32
C9orf3-209ENST00000460573 TRACP01848 142 aa13.06□□□□□ -0.32
C9orf3-209ENST00000460573 PPDPFLQ8WWR9 84 aa13.06□□□□□ -0.32
C9orf3-209ENST00000460573 F8W1H4 67 aa13.05□□□□□ -0.32
C9orf3-209ENST00000460573 C4orf48Q5BLP8 95 aa13.05□□□□□ -0.32
C9orf3-209ENST00000460573 FAM218AQ96MZ4 157 aa13.05□□□□□ -0.32
C9orf3-209ENST00000460573 SMIM29Q86T20 159 aa13.04□□□□□ -0.32
C9orf3-209ENST00000460573 GHRHP01286 108 aa13.03□□□□□ -0.32
C9orf3-209ENST00000460573 CLEC2BQ92478 149 aa13.03□□□□□ -0.32
C9orf3-209ENST00000460573 F8WEM9 126 aa12.98□□□□□ -0.33
C9orf3-209ENST00000460573 SPINK1P00995 79 aa12.98□□□□□ -0.33
C9orf3-209ENST00000460573 LRP2P98164 4655 aa12.97□□□□□ -0.33
C9orf3-209ENST00000460573 DNAL4O96015 105 aa12.96□□□□□ -0.33
C9orf3-209ENST00000460573 PRO0461Q9UI25 63 aa12.96□□□□□ -0.33
C9orf3-209ENST00000460573 C9JAW5 83 aa12.95□□□□□ -0.34
C9orf3-209ENST00000460573 H3BQ85 93 aa12.94□□□□□ -0.34
C9orf3-209ENST00000460573 H3BT86 120 aa12.94□□□□□ -0.34
C9orf3-209ENST00000460573 RPS29P62273 56 aaKnown RBP12.94□□□□□ -0.34
C9orf3-209ENST00000460573 PRR4Q16378 134 aa12.91□□□□□ -0.34
C9orf3-209ENST00000460573 IGLV8-61A0A075B6I0 122 aa12.9□□□□□ -0.34
C9orf3-209ENST00000460573 ANKRD29Q8N6D5 301 aa12.9□□□□□ -0.34
C9orf3-209ENST00000460573 ORMDL1Q9P0S3 153 aa12.9□□□□□ -0.34
C9orf3-209ENST00000460573 CD164Q04900 197 aa12.89□□□□□ -0.35
C9orf3-209ENST00000460573 Q6JHZ5 121 aa12.89□□□□□ -0.35
C9orf3-209ENST00000460573 BAALC-AS2P0C853 105 aa12.86□□□□□ -0.35
C9orf3-209ENST00000460573 SMCPP49901 116 aaPredicted RBP12.86□□□□□ -0.35
C9orf3-209ENST00000460573 NDUFV3P56181 108 aaKnown RBP12.86□□□□□ -0.35
C9orf3-209ENST00000460573 TMEM256-PLSCR3K7ERE1 68 aa12.85□□□□□ -0.35
C9orf3-209ENST00000460573 MTURNQ8N3F0 131 aa12.83□□□□□ -0.36
C9orf3-209ENST00000460573 HRCT1Q6UXD1 115 aa12.82□□□□□ -0.36
C9orf3-209ENST00000460573 LIMD2Q9BT23 127 aa12.82□□□□□ -0.36
C9orf3-209ENST00000460573 TEN1Q86WV5 123 aa12.81□□□□□ -0.36
C9orf3-209ENST00000460573 RNF213Q63HN8 5207 aa12.8□□□□□ -0.36
C9orf3-209ENST00000460573 ETDBQ3ZM63 59 aa12.79□□□□□ -0.36
C9orf3-209ENST00000460573 IGFL1Q6UW32 110 aa12.79□□□□□ -0.36
C9orf3-209ENST00000460573 RETNLBQ9BQ08 111 aa12.78□□□□□ -0.36
C9orf3-209ENST00000460573 A0A0G2JQZ4 141 aa12.77□□□□□ -0.37
C9orf3-209ENST00000460573 Q5XG85 94 aa12.75□□□□□ -0.37
C9orf3-209ENST00000460573 FP248Q71RG6 208 aaPredicted RBP12.75□□□□□ -0.37
C9orf3-209ENST00000460573 JMJD7-PLA2G4BH0Y9G9 81 aa12.7□□□□□ -0.38
C9orf3-209ENST00000460573 J3QR89 54 aa12.7□□□□□ -0.38
C9orf3-209ENST00000460573 IGLV7-46A0A075B6I9 117 aa12.69□□□□□ -0.38
C9orf3-209ENST00000460573 Q6Q795 121 aa12.69□□□□□ -0.38
C9orf3-209ENST00000460573 LPAP08519 4548 aa12.69□□□□□ -0.38
C9orf3-209ENST00000460573 TRBV7-7A0A0K0K1E9 115 aa12.68□□□□□ -0.38
C9orf3-209ENST00000460573 K7ERU9 68 aa12.67□□□□□ -0.38
C9orf3-209ENST00000460573 OBSCN-AS1Q96MR7 158 aa12.67□□□□□ -0.38
C9orf3-209ENST00000460573 RBM3P98179 157 aaKnown RBP12.63□□□□□ -0.39
C9orf3-209ENST00000460573 C21orf62-AS1Q17RA5 79 aa12.62□□□□□ -0.39
C9orf3-209ENST00000460573 TPRXLQ17RH7 258 aa12.62□□□□□ -0.39
C9orf3-209ENST00000460573 ASB16-AS1Q495Z4 193 aa12.61□□□□□ -0.39
C9orf3-209ENST00000460573 A0A1B0GV72 72 aa12.59□□□□□ -0.39
C9orf3-209ENST00000460573 PDE6GP18545 87 aa12.59□□□□□ -0.39
C9orf3-209ENST00000460573 DSCR8Q96T75 97 aa12.59□□□□□ -0.39
C9orf3-209ENST00000460573 SS18L2Q9UHA2 77 aa12.59□□□□□ -0.39
C9orf3-209ENST00000460573 TRBV7-4A0A0J9YYF1 115 aa12.58□□□□□ -0.4
C9orf3-209ENST00000460573 A0A1W2PNM2 257 aa12.57□□□□□ -0.4
C9orf3-209ENST00000460573 C1orf195Q5TG92 126 aa12.57□□□□□ -0.4
C9orf3-209ENST00000460573 A0A0U1RQV1 116 aa12.55□□□□□ -0.4
C9orf3-209ENST00000460573 LOC110117498A0A087WWA1 95 aa12.53□□□□□ -0.4
C9orf3-209ENST00000460573 CCKP06307 115 aa12.53□□□□□ -0.4
C9orf3-209ENST00000460573 A0A087WSZ3 146 aa12.52□□□□□ -0.41
C9orf3-209ENST00000460573 CDIP1Q9H305 208 aa12.52□□□□□ -0.41
C9orf3-209ENST00000460573 FAM240AA0A1B0GVK7 77 aa12.51□□□□□ -0.41
C9orf3-209ENST00000460573 ACYP1P07311 99 aa12.51□□□□□ -0.41
C9orf3-209ENST00000460573 KRTAP13-3Q3SY46 172 aa12.51□□□□□ -0.41
C9orf3-209ENST00000460573 C14orf132Q9NPU4 83 aa12.51□□□□□ -0.41
C9orf3-209ENST00000460573 VPS25Q9BRG1 176 aa12.46□□□□□ -0.41
C9orf3-209ENST00000460573 Q6ZQT0 140 aa12.45□□□□□ -0.42
C9orf3-209ENST00000460573 A0A1B0GW54 56 aa12.42□□□□□ -0.42
C9orf3-209ENST00000460573 Q96NJ1 140 aa12.36□□□□□ -0.43
C9orf3-209ENST00000460573 C9orf92A6NGG3 77 aa12.33□□□□□ -0.44
C9orf3-209ENST00000460573 XP32Q5T750 250 aa12.31□□□□□ -0.44
C9orf3-209ENST00000460573 LINC00472Q9H8W2 130 aa12.31□□□□□ -0.44
C9orf3-209ENST00000460573 MUC2Q02817 5179 aa12.28□□□□□ -0.44
C9orf3-209ENST00000460573 IGKV4-1P06312 121 aa12.27□□□□□ -0.45
C9orf3-209ENST00000460573 SIGMAR1Q99720 223 aa12.26□□□□□ -0.45
C9orf3-209ENST00000460573 UBL5Q9BZL1 73 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms