RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 LINC00472Q9H8W2 130 aa4.8□□□□□ -1.64
NEDD9-204ENST00000448183 SPRR1BP22528 89 aa4.79□□□□□ -1.64
NEDD9-204ENST00000448183 CFAP46Q8IYW2 2715 aa4.79□□□□□ -1.64
NEDD9-204ENST00000448183 ZCCHC13Q8WW36 166 aaKnown RBP4.78□□□□□ -1.64
NEDD9-204ENST00000448183 NOTCH1P46531 2555 aa4.78□□□□□ -1.64
NEDD9-204ENST00000448183 Q6ZSA8 131 aa4.78□□□□□ -1.64
NEDD9-204ENST00000448183 DMAC1Q96GE9 116 aa4.78□□□□□ -1.64
NEDD9-204ENST00000448183 CAMK2N1Q7Z7J9 78 aa4.77□□□□□ -1.65
NEDD9-204ENST00000448183 SPINK7P58062 85 aa4.77□□□□□ -1.65
NEDD9-204ENST00000448183 Q5W150 140 aa4.77□□□□□ -1.65
NEDD9-204ENST00000448183 H3BS24 57 aa4.76□□□□□ -1.65
NEDD9-204ENST00000448183 PLAC8Q9NZF1 115 aa4.76□□□□□ -1.65
NEDD9-204ENST00000448183 CFAP54Q96N23 3096 aa4.76□□□□□ -1.65
NEDD9-204ENST00000448183 UNC79Q9P2D8 2635 aa4.75□□□□□ -1.65
NEDD9-204ENST00000448183 CSAG1Q6PB30 78 aa4.75□□□□□ -1.65
NEDD9-204ENST00000448183 TEP1Q99973 2627 aaKnown RBP4.74□□□□□ -1.65
NEDD9-204ENST00000448183 LINC00483Q53H64 154 aa4.73□□□□□ -1.65
NEDD9-204ENST00000448183 A0A0A0MQY5 61 aa4.73□□□□□ -1.65
NEDD9-204ENST00000448183 LAMA2P24043 3122 aaKnown RBP4.73□□□□□ -1.65
NEDD9-204ENST00000448183 DMBT1Q9UGM3 2413 aaPredicted RBP4.72□□□□□ -1.65
NEDD9-204ENST00000448183 TEX15Q9BXT5 2789 aa4.72□□□□□ -1.65
NEDD9-204ENST00000448183 GCN1Q92616 2671 aaKnown RBP4.71□□□□□ -1.66
NEDD9-204ENST00000448183 FREM2Q5SZK8 3169 aa4.71□□□□□ -1.66
NEDD9-204ENST00000448183 KRTAP26-1Q6PEX3 210 aa4.7□□□□□ -1.66
NEDD9-204ENST00000448183 C5orf42Q9H799 3197 aa4.69□□□□□ -1.66
NEDD9-204ENST00000448183 S4R3F8 94 aa4.69□□□□□ -1.66
NEDD9-204ENST00000448183 STAB2Q8WWQ8 2551 aa4.68□□□□□ -1.66
NEDD9-204ENST00000448183 COL6A5A8TX70 2615 aa4.67□□□□□ -1.66
NEDD9-204ENST00000448183 RPL37P61927 97 aaKnown RBP4.67□□□□□ -1.66
NEDD9-204ENST00000448183 SETXQ7Z333 2677 aaKnown RBP4.66□□□□□ -1.66
NEDD9-204ENST00000448183 CHD9Q3L8U1 2897 aa4.66□□□□□ -1.66
NEDD9-204ENST00000448183 CHD7Q9P2D1 2997 aa4.66□□□□□ -1.66
NEDD9-204ENST00000448183 USP34Q70CQ2 3546 aa4.66□□□□□ -1.66
NEDD9-204ENST00000448183 KRTAP1-5Q9BYS1 174 aa4.66□□□□□ -1.66
NEDD9-204ENST00000448183 Q6ZR54 194 aa4.65□□□□□ -1.66
NEDD9-204ENST00000448183 KRTAP29-1A8MX34 341 aaPredicted RBP4.65□□□□□ -1.67
NEDD9-204ENST00000448183 R4GN34 69 aa4.65□□□□□ -1.67
NEDD9-204ENST00000448183 ROMO1P60602 79 aa4.64□□□□□ -1.67
NEDD9-204ENST00000448183 KRTAP4-16G5E9R7 235 aaPredicted RBP4.64□□□□□ -1.67
NEDD9-204ENST00000448183 ASB16-AS1Q495Z4 193 aa4.64□□□□□ -1.67
NEDD9-204ENST00000448183 TRANK1O15050 2925 aa4.63□□□□□ -1.67
NEDD9-204ENST00000448183 H1FX-AS1Q4G0G2 97 aa4.62□□□□□ -1.67
NEDD9-204ENST00000448183 M0R2T5 61 aa4.61□□□□□ -1.67
NEDD9-204ENST00000448183 NBEAL2Q6ZNJ1 2754 aa4.6□□□□□ -1.67
NEDD9-204ENST00000448183 MGAQ8IWI9 3026 aa4.59□□□□□ -1.67
NEDD9-204ENST00000448183 ZNF292O60281 2723 aa4.59□□□□□ -1.68
NEDD9-204ENST00000448183 RANBP2P49792 3224 aaKnown RBP4.57□□□□□ -1.68
NEDD9-204ENST00000448183 UBR5O95071 2799 aaPredicted RBP4.57□□□□□ -1.68
NEDD9-204ENST00000448183 SPATA8Q6RVD6 105 aa4.57□□□□□ -1.68
NEDD9-204ENST00000448183 MAP1AP78559 2803 aaPredicted RBP4.57□□□□□ -1.68
NEDD9-204ENST00000448183 NBEAQ8NFP9 2946 aa4.56□□□□□ -1.68
NEDD9-204ENST00000448183 HTTP42858 3142 aa4.56□□□□□ -1.68
NEDD9-204ENST00000448183 MKI67P46013 3256 aaKnown RBP4.56□□□□□ -1.68
NEDD9-204ENST00000448183 BAHCC1Q9P281 2608 aa4.56□□□□□ -1.68
NEDD9-204ENST00000448183 SEC61BP60468 96 aaKnown RBP4.56□□□□□ -1.68
NEDD9-204ENST00000448183 XIRP2A4UGR9 3374 aa4.56□□□□□ -1.68
NEDD9-204ENST00000448183 VPS13AQ96RL7 3174 aa4.56□□□□□ -1.68
NEDD9-204ENST00000448183 KRTAP10-1P60331 282 aa4.55□□□□□ -1.68
NEDD9-204ENST00000448183 M0QZ58 72 aa4.55□□□□□ -1.68
NEDD9-204ENST00000448183 PANO1I0J062 215 aa4.54□□□□□ -1.68
NEDD9-204ENST00000448183 BRCA2P51587 3418 aa4.54□□□□□ -1.68
NEDD9-204ENST00000448183 LAMA3Q16787 3333 aa4.54□□□□□ -1.68
NEDD9-204ENST00000448183 KRTAP10-2P60368 255 aa4.53□□□□□ -1.68
NEDD9-204ENST00000448183 A0A087X002 238 aa4.52□□□□□ -1.69
NEDD9-204ENST00000448183 LCE6AA0A183 80 aa4.52□□□□□ -1.69
NEDD9-204ENST00000448183 A6NN06 94 aa4.52□□□□□ -1.69
NEDD9-204ENST00000448183 NOTCH2NLQ7Z3S9 236 aa4.52□□□□□ -1.69
NEDD9-204ENST00000448183 NSD1Q96L73 2696 aaPredicted RBP4.51□□□□□ -1.69
NEDD9-204ENST00000448183 TRIOO75962 3097 aa4.5□□□□□ -1.69
NEDD9-204ENST00000448183 A8MU10 97 aa4.5□□□□□ -1.69
NEDD9-204ENST00000448183 UNC80Q8N2C7 3258 aa4.5□□□□□ -1.69
NEDD9-204ENST00000448183 Q5VSD8 79 aa4.49□□□□□ -1.69
NEDD9-204ENST00000448183 ADM2Q7Z4H4 148 aa4.49□□□□□ -1.69
NEDD9-204ENST00000448183 KRTAP16-1A8MUX0 517 aa4.49□□□□□ -1.69
NEDD9-204ENST00000448183 KRTAP21-3Q3LHN1 58 aa4.49□□□□□ -1.69
NEDD9-204ENST00000448183 CELSR3Q9NYQ7 3312 aa4.48□□□□□ -1.69
NEDD9-204ENST00000448183 KRTAP25-1Q3LHN0 102 aa4.47□□□□□ -1.69
NEDD9-204ENST00000448183 DNAH14Q0VDD8 3507 aa4.47□□□□□ -1.69
NEDD9-204ENST00000448183 CDH23Q9H251 3354 aa4.47□□□□□ -1.69
NEDD9-204ENST00000448183 TNRC18O15417 2968 aaPredicted RBP4.47□□□□□ -1.69
NEDD9-204ENST00000448183 WDFY4Q6ZS81 3184 aa4.46□□□□□ -1.7
NEDD9-204ENST00000448183 KRTAP11-1Q8IUC1 163 aa4.45□□□□□ -1.7
NEDD9-204ENST00000448183 DSPP15924 2871 aaKnown RBP4.44□□□□□ -1.7
NEDD9-204ENST00000448183 KRTAP7-1Q8IUC3 87 aa4.43□□□□□ -1.7
NEDD9-204ENST00000448183 FRYQ5TBA9 3013 aa4.43□□□□□ -1.7
NEDD9-204ENST00000448183 RPS29P62273 56 aaKnown RBP4.42□□□□□ -1.7
NEDD9-204ENST00000448183 IGSF10Q6WRI0 2623 aa4.41□□□□□ -1.7
NEDD9-204ENST00000448183 PLAC4Q8WY50 150 aa4.41□□□□□ -1.7
NEDD9-204ENST00000448183 ITPR1Q14643 2758 aa4.41□□□□□ -1.7
NEDD9-204ENST00000448183 Q6ZRN7 208 aaPredicted RBP4.4□□□□□ -1.71
NEDD9-204ENST00000448183 ITPR2Q14571 2701 aa4.39□□□□□ -1.71
NEDD9-204ENST00000448183 KRTAP13-1Q8IUC0 172 aa4.39□□□□□ -1.71
NEDD9-204ENST00000448183 PRUNE2Q8WUY3 3088 aa4.39□□□□□ -1.71
NEDD9-204ENST00000448183 REV3LO60673 3130 aa4.38□□□□□ -1.71
NEDD9-204ENST00000448183 KALRNO60229 2985 aa4.38□□□□□ -1.71
NEDD9-204ENST00000448183 VCANP13611 3396 aa4.37□□□□□ -1.71
NEDD9-204ENST00000448183 KRTAP13-2Q52LG2 175 aa4.36□□□□□ -1.71
NEDD9-204ENST00000448183 A8MUU9 505 aa4.36□□□□□ -1.71
NEDD9-204ENST00000448183 NDUFAF8A1L188 74 aa4.36□□□□□ -1.71
NEDD9-204ENST00000448183 APCP25054 2843 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms