RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 C1orf195Q5TG92 126 aa7.55□□□□□ -1.2
PTPRF-205ENST00000414879 ATMQ13315 3056 aa7.55□□□□□ -1.2
PTPRF-205ENST00000414879 BOD1L1Q8NFC6 3051 aa7.53□□□□□ -1.2
PTPRF-205ENST00000414879 SPRR1BP22528 89 aa7.52□□□□□ -1.21
PTPRF-205ENST00000414879 TEP1Q99973 2627 aaKnown RBP7.51□□□□□ -1.21
PTPRF-205ENST00000414879 DSCR10P59022 87 aa7.51□□□□□ -1.21
PTPRF-205ENST00000414879 PSPHP1O15172 72 aa7.5□□□□□ -1.21
PTPRF-205ENST00000414879 SPENQ96T58 3664 aaKnown RBP7.5□□□□□ -1.21
PTPRF-205ENST00000414879 SMR3BP02814 79 aaPredicted RBP7.5□□□□□ -1.21
PTPRF-205ENST00000414879 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.5□□□□□ -1.21
PTPRF-205ENST00000414879 KRTAP21-3Q3LHN1 58 aa7.49□□□□□ -1.21
PTPRF-205ENST00000414879 KRTAP26-1Q6PEX3 210 aa7.49□□□□□ -1.21
PTPRF-205ENST00000414879 ITPR1Q14643 2758 aa7.49□□□□□ -1.21
PTPRF-205ENST00000414879 CHD6Q8TD26 2715 aa7.49□□□□□ -1.21
PTPRF-205ENST00000414879 HRNRQ86YZ3 2850 aaPredicted RBP7.48□□□□□ -1.21
PTPRF-205ENST00000414879 PMAIP1Q13794 54 aa7.48□□□□□ -1.21
PTPRF-205ENST00000414879 IGLV8-61A0A075B6I0 122 aa7.48□□□□□ -1.21
PTPRF-205ENST00000414879 ASPMQ8IZT6 3477 aa7.48□□□□□ -1.21
PTPRF-205ENST00000414879 SPANXA2-OT1Q8N9U9 137 aa7.47□□□□□ -1.21
PTPRF-205ENST00000414879 DCHS1Q96JQ0 3298 aa7.47□□□□□ -1.21
PTPRF-205ENST00000414879 CFAP47Q6ZTR5 3102 aa7.47□□□□□ -1.21
PTPRF-205ENST00000414879 UBR5O95071 2799 aaPredicted RBP7.47□□□□□ -1.21
PTPRF-205ENST00000414879 CYP4F30PQ9H0H9 118 aa7.46□□□□□ -1.22
PTPRF-205ENST00000414879 LCE6AA0A183 80 aa7.45□□□□□ -1.22
PTPRF-205ENST00000414879 LAMA5O15230 3695 aa7.44□□□□□ -1.22
PTPRF-205ENST00000414879 ANAPC11Q9NYG5 84 aa7.44□□□□□ -1.22
PTPRF-205ENST00000414879 COA5Q86WW8 74 aa7.43□□□□□ -1.22
PTPRF-205ENST00000414879 COL6A5A8TX70 2615 aa7.42□□□□□ -1.22
PTPRF-205ENST00000414879 RBM12B-AS1Q9P1G2 102 aa7.41□□□□□ -1.22
PTPRF-205ENST00000414879 ADGRG4Q8IZF6 3080 aa7.41□□□□□ -1.22
PTPRF-205ENST00000414879 PRO0628Q9UI54 55 aa7.4□□□□□ -1.22
PTPRF-205ENST00000414879 STAB1Q9NY15 2570 aa7.39□□□□□ -1.23
PTPRF-205ENST00000414879 KRTAP1-5Q9BYS1 174 aa7.39□□□□□ -1.23
PTPRF-205ENST00000414879 GCN1Q92616 2671 aaKnown RBP7.39□□□□□ -1.23
PTPRF-205ENST00000414879 Q6ZR54 194 aa7.38□□□□□ -1.23
PTPRF-205ENST00000414879 A0A0G2JQZ4 141 aa7.38□□□□□ -1.23
PTPRF-205ENST00000414879 TEX15Q9BXT5 2789 aa7.38□□□□□ -1.23
PTPRF-205ENST00000414879 LRBAP50851 2863 aa7.37□□□□□ -1.23
PTPRF-205ENST00000414879 H7BZZ5 65 aa7.36□□□□□ -1.23
PTPRF-205ENST00000414879 COX6B2Q6YFQ2 88 aa7.36□□□□□ -1.23
PTPRF-205ENST00000414879 C9orf92A6NGG3 77 aa7.36□□□□□ -1.23
PTPRF-205ENST00000414879 A8MUN3 132 aa7.36□□□□□ -1.23
PTPRF-205ENST00000414879 KMT2BQ9UMN6 2715 aaPredicted RBP7.36□□□□□ -1.23
PTPRF-205ENST00000414879 OCR1Q9BZK8 76 aa7.35□□□□□ -1.23
PTPRF-205ENST00000414879 UQCR11O14957 56 aa7.35□□□□□ -1.23
PTPRF-205ENST00000414879 Q8NDZ9 215 aa7.35□□□□□ -1.23
PTPRF-205ENST00000414879 PRR26Q8N8Z3 221 aa7.32□□□□□ -1.24
PTPRF-205ENST00000414879 IGLV7-46A0A075B6I9 117 aa7.32□□□□□ -1.24
PTPRF-205ENST00000414879 LINC00483Q53H64 154 aa7.32□□□□□ -1.24
PTPRF-205ENST00000414879 KALRNO60229 2985 aa7.31□□□□□ -1.24
PTPRF-205ENST00000414879 LINC00472Q9H8W2 130 aa7.29□□□□□ -1.24
PTPRF-205ENST00000414879 ZZEF1O43149 2961 aa7.27□□□□□ -1.24
PTPRF-205ENST00000414879 MMP24-AS1A0A0U1RRL7 71 aa7.27□□□□□ -1.25
PTPRF-205ENST00000414879 KRTAP4-16G5E9R7 235 aaPredicted RBP7.27□□□□□ -1.25
PTPRF-205ENST00000414879 FLNCQ14315 2725 aa7.26□□□□□ -1.25
PTPRF-205ENST00000414879 NBEAQ8NFP9 2946 aa7.26□□□□□ -1.25
PTPRF-205ENST00000414879 Q6ZSA8 131 aa7.25□□□□□ -1.25
PTPRF-205ENST00000414879 KRTAP10-1P60331 282 aa7.25□□□□□ -1.25
PTPRF-205ENST00000414879 NOTCH1P46531 2555 aa7.24□□□□□ -1.25
PTPRF-205ENST00000414879 ITPR2Q14571 2701 aa7.24□□□□□ -1.25
PTPRF-205ENST00000414879 SMG1Q96Q15 3661 aaKnown RBP7.23□□□□□ -1.25
PTPRF-205ENST00000414879 UTP20O75691 2785 aaKnown RBP7.23□□□□□ -1.25
PTPRF-205ENST00000414879 C4orf26Q17RF5 130 aa7.23□□□□□ -1.25
PTPRF-205ENST00000414879 ZCCHC13Q8WW36 166 aaKnown RBP7.23□□□□□ -1.25
PTPRF-205ENST00000414879 RELNP78509 3460 aa7.22□□□□□ -1.25
PTPRF-205ENST00000414879 NSD1Q96L73 2696 aaPredicted RBP7.22□□□□□ -1.25
PTPRF-205ENST00000414879 FP248Q71RG6 208 aaPredicted RBP7.22□□□□□ -1.25
PTPRF-205ENST00000414879 KRTAP10-2P60368 255 aa7.21□□□□□ -1.26
PTPRF-205ENST00000414879 MIR22HGQ0VDD5 57 aa7.2□□□□□ -1.26
PTPRF-205ENST00000414879 Q6ZRN7 208 aaPredicted RBP7.2□□□□□ -1.26
PTPRF-205ENST00000414879 FBN2P35556 2912 aa7.19□□□□□ -1.26
PTPRF-205ENST00000414879 DCHS2Q6V1P9 2916 aa7.19□□□□□ -1.26
PTPRF-205ENST00000414879 Q5VSD8 79 aa7.19□□□□□ -1.26
PTPRF-205ENST00000414879 APCP25054 2843 aa7.19□□□□□ -1.26
PTPRF-205ENST00000414879 RPS29P62273 56 aaKnown RBP7.18□□□□□ -1.26
PTPRF-205ENST00000414879 COL12A1Q99715 3063 aa7.17□□□□□ -1.26
PTPRF-205ENST00000414879 SEC61BP60468 96 aaKnown RBP7.16□□□□□ -1.26
PTPRF-205ENST00000414879 ASB16-AS1Q495Z4 193 aa7.15□□□□□ -1.26
PTPRF-205ENST00000414879 HRES1P13985 223 aa7.14□□□□□ -1.27
PTPRF-205ENST00000414879 Q8N1X5 172 aa7.13□□□□□ -1.27
PTPRF-205ENST00000414879 Q1T7F1 81 aa7.12□□□□□ -1.27
PTPRF-205ENST00000414879 PDZD2O15018 2839 aa7.12□□□□□ -1.27
PTPRF-205ENST00000414879 OXTP01178 125 aa7.12□□□□□ -1.27
PTPRF-205ENST00000414879 NBEAL1Q6ZS30 2694 aa7.11□□□□□ -1.27
PTPRF-205ENST00000414879 ANK3Q12955 4377 aaKnown RBP7.11□□□□□ -1.27
PTPRF-205ENST00000414879 TACC2O95359 2948 aa7.1□□□□□ -1.27
PTPRF-205ENST00000414879 MAP1AP78559 2803 aaPredicted RBP7.09□□□□□ -1.27
PTPRF-205ENST00000414879 HIVEP1P15822 2718 aa7.09□□□□□ -1.27
PTPRF-205ENST00000414879 Q5W150 140 aa7.09□□□□□ -1.27
PTPRF-205ENST00000414879 PANO1I0J062 215 aa7.08□□□□□ -1.28
PTPRF-205ENST00000414879 Q5XG85 94 aa7.07□□□□□ -1.28
PTPRF-205ENST00000414879 CSAG1Q6PB30 78 aa7.06□□□□□ -1.28
PTPRF-205ENST00000414879 CDC42SE1Q9NRR8 79 aa7.06□□□□□ -1.28
PTPRF-205ENST00000414879 TENM4Q6N022 2769 aa7.05□□□□□ -1.28
PTPRF-205ENST00000414879 CRIPTQ9P021 101 aa7.05□□□□□ -1.28
PTPRF-205ENST00000414879 SPINK7P58062 85 aa7.04□□□□□ -1.28
PTPRF-205ENST00000414879 CELSR2Q9HCU4 2923 aa7.03□□□□□ -1.28
PTPRF-205ENST00000414879 LINC01558Q9Y6Z2 57 aa7.03□□□□□ -1.28
PTPRF-205ENST00000414879 KRTAP13-1Q8IUC0 172 aa7.02□□□□□ -1.29
PTPRF-205ENST00000414879 Q8N9P0 234 aaPredicted RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms