RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 KRTAP1-5Q9BYS1 174 aa10.64□□□□□ -0.71
PHRF1-202ENST00000413872 BAHCC1Q9P281 2608 aa10.63□□□□□ -0.71
PHRF1-202ENST00000413872 OCR1Q9BZK8 76 aa10.62□□□□□ -0.71
PHRF1-202ENST00000413872 MAP1AP78559 2803 aaPredicted RBP10.62□□□□□ -0.71
PHRF1-202ENST00000413872 KRTAP26-1Q6PEX3 210 aa10.61□□□□□ -0.71
PHRF1-202ENST00000413872 CRIPTQ9P021 101 aa10.59□□□□□ -0.71
PHRF1-202ENST00000413872 Q8NDZ9 215 aa10.58□□□□□ -0.72
PHRF1-202ENST00000413872 UNC80Q8N2C7 3258 aa10.54□□□□□ -0.72
PHRF1-202ENST00000413872 ZCCHC13Q8WW36 166 aaKnown RBP10.53□□□□□ -0.72
PHRF1-202ENST00000413872 NOTCH1P46531 2555 aa10.53□□□□□ -0.72
PHRF1-202ENST00000413872 TRIOO75962 3097 aa10.53□□□□□ -0.72
PHRF1-202ENST00000413872 MMP24-AS1A0A0U1RRL7 71 aa10.52□□□□□ -0.72
PHRF1-202ENST00000413872 DSPP15924 2871 aaKnown RBP10.52□□□□□ -0.73
PHRF1-202ENST00000413872 XIRP2A4UGR9 3374 aa10.51□□□□□ -0.73
PHRF1-202ENST00000413872 Q5VSD8 79 aa10.5□□□□□ -0.73
PHRF1-202ENST00000413872 KRTAP10-1P60331 282 aa10.5□□□□□ -0.73
PHRF1-202ENST00000413872 GCN1Q92616 2671 aaKnown RBP10.49□□□□□ -0.73
PHRF1-202ENST00000413872 SPINT4Q6UDR6 99 aa10.48□□□□□ -0.73
PHRF1-202ENST00000413872 LINC01554Q52M75 96 aa10.48□□□□□ -0.73
PHRF1-202ENST00000413872 HRES1P13985 223 aa10.48□□□□□ -0.73
PHRF1-202ENST00000413872 Q6ZR54 194 aa10.47□□□□□ -0.73
PHRF1-202ENST00000413872 LINC00472Q9H8W2 130 aa10.47□□□□□ -0.73
PHRF1-202ENST00000413872 NBEAL1Q6ZS30 2694 aa10.47□□□□□ -0.73
PHRF1-202ENST00000413872 KRTAP10-2P60368 255 aa10.45□□□□□ -0.74
PHRF1-202ENST00000413872 SEC61BP60468 96 aaKnown RBP10.44□□□□□ -0.74
PHRF1-202ENST00000413872 VPS13AQ96RL7 3174 aa10.44□□□□□ -0.74
PHRF1-202ENST00000413872 CDC42SE1Q9NRR8 79 aa10.43□□□□□ -0.74
PHRF1-202ENST00000413872 A0A0D9SG42 100 aa10.41□□□□□ -0.74
PHRF1-202ENST00000413872 M0R2T5 61 aa10.41□□□□□ -0.74
PHRF1-202ENST00000413872 LINC00483Q53H64 154 aa10.41□□□□□ -0.74
PHRF1-202ENST00000413872 CSAG1Q6PB30 78 aa10.4□□□□□ -0.75
PHRF1-202ENST00000413872 NBEAL2Q6ZNJ1 2754 aa10.36□□□□□ -0.75
PHRF1-202ENST00000413872 UBR5O95071 2799 aaPredicted RBP10.36□□□□□ -0.75
PHRF1-202ENST00000413872 FRYQ5TBA9 3013 aa10.35□□□□□ -0.75
PHRF1-202ENST00000413872 FP248Q71RG6 208 aaPredicted RBP10.35□□□□□ -0.75
PHRF1-202ENST00000413872 KRTAP21-3Q3LHN1 58 aa10.34□□□□□ -0.75
PHRF1-202ENST00000413872 Q5W150 140 aa10.33□□□□□ -0.76
PHRF1-202ENST00000413872 A0A1B0GU33 70 aa10.33□□□□□ -0.76
PHRF1-202ENST00000413872 Q1T7F1 81 aa10.33□□□□□ -0.76
PHRF1-202ENST00000413872 Q8N9P0 234 aaPredicted RBP10.33□□□□□ -0.76
PHRF1-202ENST00000413872 SPINK7P58062 85 aa10.32□□□□□ -0.76
PHRF1-202ENST00000413872 S4R3F8 94 aa10.31□□□□□ -0.76
PHRF1-202ENST00000413872 NSD1Q96L73 2696 aaPredicted RBP10.31□□□□□ -0.76
PHRF1-202ENST00000413872 KRTAP4-16G5E9R7 235 aaPredicted RBP10.3□□□□□ -0.76
PHRF1-202ENST00000413872 ITPR2Q14571 2701 aa10.29□□□□□ -0.76
PHRF1-202ENST00000413872 FREM2Q5SZK8 3169 aa10.29□□□□□ -0.76
PHRF1-202ENST00000413872 CAMK2N1Q7Z7J9 78 aa10.29□□□□□ -0.76
PHRF1-202ENST00000413872 OXTP01178 125 aa10.26□□□□□ -0.77
PHRF1-202ENST00000413872 PANO1I0J062 215 aa10.25□□□□□ -0.77
PHRF1-202ENST00000413872 CDH23Q9H251 3354 aa10.24□□□□□ -0.77
PHRF1-202ENST00000413872 KTN1-AS1Q86SY8 53 aa10.22□□□□□ -0.77
PHRF1-202ENST00000413872 LINC01558Q9Y6Z2 57 aa10.21□□□□□ -0.77
PHRF1-202ENST00000413872 CELSR3Q9NYQ7 3312 aa10.21□□□□□ -0.77
PHRF1-202ENST00000413872 CYSTM1Q9H1C7 97 aa10.2□□□□□ -0.78
PHRF1-202ENST00000413872 DMAC1Q96GE9 116 aa10.2□□□□□ -0.78
PHRF1-202ENST00000413872 Q6ZRN7 208 aaPredicted RBP10.2□□□□□ -0.78
PHRF1-202ENST00000413872 Q75L30 129 aa10.19□□□□□ -0.78
PHRF1-202ENST00000413872 KMT2BQ9UMN6 2715 aaPredicted RBP10.17□□□□□ -0.78
PHRF1-202ENST00000413872 FLG2Q5D862 2391 aaPredicted RBP10.17□□□□□ -0.78
PHRF1-202ENST00000413872 LCA10Q71F78 164 aa10.17□□□□□ -0.78
PHRF1-202ENST00000413872 ITPR1Q14643 2758 aa10.15□□□□□ -0.78
PHRF1-202ENST00000413872 FLNCQ14315 2725 aa10.15□□□□□ -0.79
PHRF1-202ENST00000413872 TACC2O95359 2948 aa10.14□□□□□ -0.79
PHRF1-202ENST00000413872 STAB2Q8WWQ8 2551 aa10.13□□□□□ -0.79
PHRF1-202ENST00000413872 RPS29P62273 56 aaKnown RBP10.13□□□□□ -0.79
PHRF1-202ENST00000413872 A0A087X002 238 aa10.11□□□□□ -0.79
PHRF1-202ENST00000413872 R4GN34 69 aa10.1□□□□□ -0.79
PHRF1-202ENST00000413872 ASB16-AS1Q495Z4 193 aa10.1□□□□□ -0.79
PHRF1-202ENST00000413872 KALRNO60229 2985 aa10.1□□□□□ -0.79
PHRF1-202ENST00000413872 ATMQ13315 3056 aa10.07□□□□□ -0.8
PHRF1-202ENST00000413872 DMXL2Q8TDJ6 3036 aa10.07□□□□□ -0.8
PHRF1-202ENST00000413872 NBEAQ8NFP9 2946 aa10.05□□□□□ -0.8
PHRF1-202ENST00000413872 LAMA1P25391 3075 aa10.04□□□□□ -0.8
PHRF1-202ENST00000413872 KRTAP29-1A8MX34 341 aaPredicted RBP10.03□□□□□ -0.8
PHRF1-202ENST00000413872 Q5XG85 94 aa10.02□□□□□ -0.81
PHRF1-202ENST00000413872 HIVEP1P15822 2718 aa10.02□□□□□ -0.81
PHRF1-202ENST00000413872 VCANP13611 3396 aa10.01□□□□□ -0.81
PHRF1-202ENST00000413872 SZT2Q5T011 3432 aa10.01□□□□□ -0.81
PHRF1-202ENST00000413872 FRYLO94915 3013 aa10□□□□□ -0.81
PHRF1-202ENST00000413872 COL12A1Q99715 3063 aa10□□□□□ -0.81
PHRF1-202ENST00000413872 LUZP6Q538Z0 58 aa9.98□□□□□ -0.81
PHRF1-202ENST00000413872 DMBT1Q9UGM3 2413 aaPredicted RBP9.98□□□□□ -0.81
PHRF1-202ENST00000413872 KRTAP11-1Q8IUC1 163 aa9.96□□□□□ -0.82
PHRF1-202ENST00000413872 ADGRG4Q8IZF6 3080 aa9.96□□□□□ -0.82
PHRF1-202ENST00000413872 REV3LO60673 3130 aa9.96□□□□□ -0.82
PHRF1-202ENST00000413872 BOD1L1Q8NFC6 3051 aa9.95□□□□□ -0.82
PHRF1-202ENST00000413872 KRTAP7-1Q8IUC3 87 aa9.93□□□□□ -0.82
PHRF1-202ENST00000413872 ASH1LQ9NR48 2969 aaKnown RBP9.92□□□□□ -0.82
PHRF1-202ENST00000413872 KRTAP13-1Q8IUC0 172 aa9.92□□□□□ -0.82
PHRF1-202ENST00000413872 Q5VV11 94 aa9.9□□□□□ -0.82
PHRF1-202ENST00000413872 RPL37P61927 97 aaKnown RBP9.89□□□□□ -0.83
PHRF1-202ENST00000413872 DNAH14Q0VDD8 3507 aa9.88□□□□□ -0.83
PHRF1-202ENST00000413872 M0QZ58 72 aa9.88□□□□□ -0.83
PHRF1-202ENST00000413872 UTP20O75691 2785 aaKnown RBP9.87□□□□□ -0.83
PHRF1-202ENST00000413872 TENM4Q6N022 2769 aa9.85□□□□□ -0.83
PHRF1-202ENST00000413872 H1FX-AS1Q4G0G2 97 aa9.85□□□□□ -0.83
PHRF1-202ENST00000413872 KRTAP13-2Q52LG2 175 aa9.85□□□□□ -0.83
PHRF1-202ENST00000413872 LRBAP50851 2863 aa9.84□□□□□ -0.83
PHRF1-202ENST00000413872 PRAC1Q96KF2 57 aa9.84□□□□□ -0.83
PHRF1-202ENST00000413872 NIPBLQ6KC79 2804 aaeCLIP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms