RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 Q5XG85 94 aa8.47□□□□□ -1.05
CCDC88A-204ENST00000413716 RPL37P61927 97 aaKnown RBP8.45□□□□□ -1.06
CCDC88A-204ENST00000413716 ZCCHC13Q8WW36 166 aaKnown RBP8.44□□□□□ -1.06
CCDC88A-204ENST00000413716 KRTAP24-1Q3LI83 254 aa8.43□□□□□ -1.06
CCDC88A-204ENST00000413716 GCN1Q92616 2671 aaKnown RBP8.43□□□□□ -1.06
CCDC88A-204ENST00000413716 LINC00612Q8N6U2 182 aa8.42□□□□□ -1.06
CCDC88A-204ENST00000413716 STAB2Q8WWQ8 2551 aa8.42□□□□□ -1.06
CCDC88A-204ENST00000413716 ASB16-AS1Q495Z4 193 aa8.41□□□□□ -1.06
CCDC88A-204ENST00000413716 GIG44P09565 113 aaPredicted RBP8.4□□□□□ -1.06
CCDC88A-204ENST00000413716 KMT2BQ9UMN6 2715 aaPredicted RBP8.39□□□□□ -1.07
CCDC88A-204ENST00000413716 UNC79Q9P2D8 2635 aa8.39□□□□□ -1.07
CCDC88A-204ENST00000413716 CFAP54Q96N23 3096 aa8.39□□□□□ -1.07
CCDC88A-204ENST00000413716 FP248Q71RG6 208 aaPredicted RBP8.37□□□□□ -1.07
CCDC88A-204ENST00000413716 KRTAP10-11P60412 298 aa8.37□□□□□ -1.07
CCDC88A-204ENST00000413716 NOTCH1P46531 2555 aa8.36□□□□□ -1.07
CCDC88A-204ENST00000413716 LAMA2P24043 3122 aaKnown RBP8.35□□□□□ -1.07
CCDC88A-204ENST00000413716 M0QZ58 72 aa8.35□□□□□ -1.07
CCDC88A-204ENST00000413716 K7EIL1 84 aa8.34□□□□□ -1.07
CCDC88A-204ENST00000413716 ITPR2Q14571 2701 aa8.33□□□□□ -1.08
CCDC88A-204ENST00000413716 A0A0C4DFX4 3053 aa8.33□□□□□ -1.08
CCDC88A-204ENST00000413716 Q5W150 140 aa8.32□□□□□ -1.08
CCDC88A-204ENST00000413716 TEP1Q99973 2627 aaKnown RBP8.31□□□□□ -1.08
CCDC88A-204ENST00000413716 MMP24-AS1A0A0U1RRL7 71 aa8.29□□□□□ -1.08
CCDC88A-204ENST00000413716 KLK9Q2XQG4 91 aa8.29□□□□□ -1.08
CCDC88A-204ENST00000413716 C20orf166-AS1Q96NR2 134 aa8.27□□□□□ -1.08
CCDC88A-204ENST00000413716 SEC61BP60468 96 aaKnown RBP8.25□□□□□ -1.09
CCDC88A-204ENST00000413716 BAHCC1Q9P281 2608 aa8.23□□□□□ -1.09
CCDC88A-204ENST00000413716 XIRP2A4UGR9 3374 aa8.23□□□□□ -1.09
CCDC88A-204ENST00000413716 CASC10Q5T4H9 136 aa8.23□□□□□ -1.09
CCDC88A-204ENST00000413716 C10orf142B7Z368 130 aa8.2□□□□□ -1.1
CCDC88A-204ENST00000413716 ADM2Q7Z4H4 148 aa8.2□□□□□ -1.1
CCDC88A-204ENST00000413716 SETXQ7Z333 2677 aaKnown RBP8.18□□□□□ -1.1
CCDC88A-204ENST00000413716 Q8NDZ9 215 aa8.17□□□□□ -1.1
CCDC88A-204ENST00000413716 ZNF292O60281 2723 aa8.16□□□□□ -1.1
CCDC88A-204ENST00000413716 APCP25054 2843 aa8.16□□□□□ -1.1
CCDC88A-204ENST00000413716 CYSTM1Q9H1C7 97 aa8.15□□□□□ -1.1
CCDC88A-204ENST00000413716 SPATA8Q6RVD6 105 aa8.14□□□□□ -1.11
CCDC88A-204ENST00000413716 NDUFAF8A1L188 74 aa8.13□□□□□ -1.11
CCDC88A-204ENST00000413716 KRTAP25-1Q3LHN0 102 aa8.13□□□□□ -1.11
CCDC88A-204ENST00000413716 TRANK1O15050 2925 aa8.11□□□□□ -1.11
CCDC88A-204ENST00000413716 LINC00472Q9H8W2 130 aa8.11□□□□□ -1.11
CCDC88A-204ENST00000413716 PANO1I0J062 215 aa8.07□□□□□ -1.12
CCDC88A-204ENST00000413716 A0A096LNT2 108 aa8.06□□□□□ -1.12
CCDC88A-204ENST00000413716 PLAC8Q9NZF1 115 aa8.06□□□□□ -1.12
CCDC88A-204ENST00000413716 MGAQ8IWI9 3026 aa8.06□□□□□ -1.12
CCDC88A-204ENST00000413716 VPS13AQ96RL7 3174 aa8.05□□□□□ -1.12
CCDC88A-204ENST00000413716 NSD1Q96L73 2696 aaPredicted RBP8.02□□□□□ -1.12
CCDC88A-204ENST00000413716 Q6ZR54 194 aa8.02□□□□□ -1.13
CCDC88A-204ENST00000413716 DSPP15924 2871 aaKnown RBP8.02□□□□□ -1.13
CCDC88A-204ENST00000413716 MKI67P46013 3256 aaKnown RBP8□□□□□ -1.13
CCDC88A-204ENST00000413716 UTP20O75691 2785 aaKnown RBP7.99□□□□□ -1.13
CCDC88A-204ENST00000413716 TRIOO75962 3097 aa7.99□□□□□ -1.13
CCDC88A-204ENST00000413716 KRTAP10-3P60369 221 aa7.98□□□□□ -1.13
CCDC88A-204ENST00000413716 C10orf95Q9H7T3 257 aa7.97□□□□□ -1.13
CCDC88A-204ENST00000413716 FRYLO94915 3013 aa7.97□□□□□ -1.13
CCDC88A-204ENST00000413716 OXTP01178 125 aa7.97□□□□□ -1.13
CCDC88A-204ENST00000413716 SPRR1AP35321 89 aa7.96□□□□□ -1.14
CCDC88A-204ENST00000413716 KRTAP26-1Q6PEX3 210 aa7.96□□□□□ -1.14
CCDC88A-204ENST00000413716 NBEAL2Q6ZNJ1 2754 aa7.96□□□□□ -1.14
CCDC88A-204ENST00000413716 Q5VSD8 79 aa7.95□□□□□ -1.14
CCDC88A-204ENST00000413716 A6NN06 94 aa7.94□□□□□ -1.14
CCDC88A-204ENST00000413716 CHD7Q9P2D1 2997 aa7.94□□□□□ -1.14
CCDC88A-204ENST00000413716 SPRR1BP22528 89 aa7.92□□□□□ -1.14
CCDC88A-204ENST00000413716 FRYQ5TBA9 3013 aa7.91□□□□□ -1.14
CCDC88A-204ENST00000413716 LRBAP50851 2863 aa7.89□□□□□ -1.15
CCDC88A-204ENST00000413716 PRUNE2Q8WUY3 3088 aa7.89□□□□□ -1.15
CCDC88A-204ENST00000413716 A8MUU9 505 aa7.88□□□□□ -1.15
CCDC88A-204ENST00000413716 IGSF10Q6WRI0 2623 aa7.87□□□□□ -1.15
CCDC88A-204ENST00000413716 BRCA2P51587 3418 aa7.84□□□□□ -1.15
CCDC88A-204ENST00000413716 TNP1P09430 55 aa7.83□□□□□ -1.16
CCDC88A-204ENST00000413716 USP34Q70CQ2 3546 aa7.83□□□□□ -1.16
CCDC88A-204ENST00000413716 CELSR3Q9NYQ7 3312 aa7.82□□□□□ -1.16
CCDC88A-204ENST00000413716 DNAH14Q0VDD8 3507 aa7.81□□□□□ -1.16
CCDC88A-204ENST00000413716 WDFY4Q6ZS81 3184 aa7.81□□□□□ -1.16
CCDC88A-204ENST00000413716 RANBP2P49792 3224 aaKnown RBP7.8□□□□□ -1.16
CCDC88A-204ENST00000413716 A8MU10 97 aa7.8□□□□□ -1.16
CCDC88A-204ENST00000413716 LAMA3Q16787 3333 aa7.79□□□□□ -1.16
CCDC88A-204ENST00000413716 ITPR1Q14643 2758 aa7.79□□□□□ -1.16
CCDC88A-204ENST00000413716 KALRNO60229 2985 aa7.78□□□□□ -1.16
CCDC88A-204ENST00000413716 CRYBG3Q68DQ2 2970 aa7.74□□□□□ -1.17
CCDC88A-204ENST00000413716 UBR5O95071 2799 aaPredicted RBP7.73□□□□□ -1.17
CCDC88A-204ENST00000413716 PP632Q6XCG6 107 aa7.73□□□□□ -1.17
CCDC88A-204ENST00000413716 FREM2Q5SZK8 3169 aa7.71□□□□□ -1.17
CCDC88A-204ENST00000413716 A0A087X002 238 aa7.71□□□□□ -1.17
CCDC88A-204ENST00000413716 TACC2O95359 2948 aa7.71□□□□□ -1.18
CCDC88A-204ENST00000413716 KRTAP29-1A8MX34 341 aaPredicted RBP7.7□□□□□ -1.18
CCDC88A-204ENST00000413716 REV3LO60673 3130 aa7.69□□□□□ -1.18
CCDC88A-204ENST00000413716 CHD9Q3L8U1 2897 aa7.69□□□□□ -1.18
CCDC88A-204ENST00000413716 LAMA1P25391 3075 aa7.67□□□□□ -1.18
CCDC88A-204ENST00000413716 FLNCQ14315 2725 aa7.67□□□□□ -1.18
CCDC88A-204ENST00000413716 ASH1LQ9NR48 2969 aaKnown RBP7.67□□□□□ -1.18
CCDC88A-204ENST00000413716 CDH23Q9H251 3354 aa7.67□□□□□ -1.18
CCDC88A-204ENST00000413716 HTTP42858 3142 aa7.65□□□□□ -1.18
CCDC88A-204ENST00000413716 P0C880 135 aa7.63□□□□□ -1.19
CCDC88A-204ENST00000413716 KRTAP11-1Q8IUC1 163 aa7.62□□□□□ -1.19
CCDC88A-204ENST00000413716 RPS29P62273 56 aaKnown RBP7.62□□□□□ -1.19
CCDC88A-204ENST00000413716 KRTAP10-1P60331 282 aa7.6□□□□□ -1.19
CCDC88A-204ENST00000413716 COL6A3P12111 3177 aa7.6□□□□□ -1.19
CCDC88A-204ENST00000413716 HIVEP1P15822 2718 aa7.58□□□□□ -1.2
CCDC88A-204ENST00000413716 NOTCH2NLQ7Z3S9 236 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms