RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 UNC80Q8N2C7 3258 aa7.82□□□□□ -1.16
CCDC88C-204ENST00000389857 EPG5Q9HCE0 2579 aa7.81□□□□□ -1.16
CCDC88C-204ENST00000389857 SPINK7P58062 85 aa7.81□□□□□ -1.16
CCDC88C-204ENST00000389857 USP24Q9UPU5 2620 aa7.81□□□□□ -1.16
CCDC88C-204ENST00000389857 TRIOO75962 3097 aa7.78□□□□□ -1.16
CCDC88C-204ENST00000389857 LINC00472Q9H8W2 130 aa7.78□□□□□ -1.16
CCDC88C-204ENST00000389857 SPRR1BP22528 89 aa7.78□□□□□ -1.16
CCDC88C-204ENST00000389857 ROMO1P60602 79 aa7.77□□□□□ -1.17
CCDC88C-204ENST00000389857 Q5VV11 94 aa7.77□□□□□ -1.17
CCDC88C-204ENST00000389857 PRAC1Q96KF2 57 aa7.76□□□□□ -1.17
CCDC88C-204ENST00000389857 RPL37P61927 97 aaKnown RBP7.75□□□□□ -1.17
CCDC88C-204ENST00000389857 Q5XG85 94 aa7.75□□□□□ -1.17
CCDC88C-204ENST00000389857 Q5VSD8 79 aa7.73□□□□□ -1.17
CCDC88C-204ENST00000389857 H3BS24 57 aa7.71□□□□□ -1.17
CCDC88C-204ENST00000389857 H1FX-AS1Q4G0G2 97 aa7.71□□□□□ -1.18
CCDC88C-204ENST00000389857 M0QZ58 72 aa7.7□□□□□ -1.18
CCDC88C-204ENST00000389857 FP248Q71RG6 208 aaPredicted RBP7.7□□□□□ -1.18
CCDC88C-204ENST00000389857 PLAC4Q8WY50 150 aa7.7□□□□□ -1.18
CCDC88C-204ENST00000389857 Q8NDZ9 215 aa7.69□□□□□ -1.18
CCDC88C-204ENST00000389857 FLNBO75369 2602 aaKnown RBP7.68□□□□□ -1.18
CCDC88C-204ENST00000389857 CDH23Q9H251 3354 aa7.67□□□□□ -1.18
CCDC88C-204ENST00000389857 KRTAP26-1Q6PEX3 210 aa7.67□□□□□ -1.18
CCDC88C-204ENST00000389857 ZNF292O60281 2723 aa7.65□□□□□ -1.19
CCDC88C-204ENST00000389857 PRUNE2Q8WUY3 3088 aa7.64□□□□□ -1.19
CCDC88C-204ENST00000389857 OXTP01178 125 aa7.63□□□□□ -1.19
CCDC88C-204ENST00000389857 ADM2Q7Z4H4 148 aa7.62□□□□□ -1.19
CCDC88C-204ENST00000389857 CYSTM1Q9H1C7 97 aa7.61□□□□□ -1.19
CCDC88C-204ENST00000389857 ASB16-AS1Q495Z4 193 aa7.6□□□□□ -1.19
CCDC88C-204ENST00000389857 LCE6AA0A183 80 aa7.59□□□□□ -1.19
CCDC88C-204ENST00000389857 KRTAP10-1P60331 282 aa7.59□□□□□ -1.19
CCDC88C-204ENST00000389857 Q6ZR54 194 aa7.59□□□□□ -1.19
CCDC88C-204ENST00000389857 LAMA1P25391 3075 aa7.57□□□□□ -1.2
CCDC88C-204ENST00000389857 KRTAP1-5Q9BYS1 174 aa7.56□□□□□ -1.2
CCDC88C-204ENST00000389857 CFAP54Q96N23 3096 aa7.56□□□□□ -1.2
CCDC88C-204ENST00000389857 MGAM2Q2M2H8 2515 aa7.56□□□□□ -1.2
CCDC88C-204ENST00000389857 HECTD1Q9ULT8 2610 aa7.56□□□□□ -1.2
CCDC88C-204ENST00000389857 SZT2Q5T011 3432 aa7.55□□□□□ -1.2
CCDC88C-204ENST00000389857 VPS13AQ96RL7 3174 aa7.53□□□□□ -1.2
CCDC88C-204ENST00000389857 KRTAP10-2P60368 255 aa7.53□□□□□ -1.2
CCDC88C-204ENST00000389857 SPATA8Q6RVD6 105 aa7.51□□□□□ -1.21
CCDC88C-204ENST00000389857 PANO1I0J062 215 aa7.49□□□□□ -1.21
CCDC88C-204ENST00000389857 MGAQ8IWI9 3026 aa7.49□□□□□ -1.21
CCDC88C-204ENST00000389857 DSPP15924 2871 aaKnown RBP7.49□□□□□ -1.21
CCDC88C-204ENST00000389857 VCANP13611 3396 aa7.48□□□□□ -1.21
CCDC88C-204ENST00000389857 WDFY4Q6ZS81 3184 aa7.48□□□□□ -1.21
CCDC88C-204ENST00000389857 FLNAP21333 2647 aaKnown RBP7.48□□□□□ -1.21
CCDC88C-204ENST00000389857 NBEAQ8NFP9 2946 aa7.47□□□□□ -1.21
CCDC88C-204ENST00000389857 REV3LO60673 3130 aa7.46□□□□□ -1.21
CCDC88C-204ENST00000389857 DNAH14Q0VDD8 3507 aa7.46□□□□□ -1.22
CCDC88C-204ENST00000389857 XIRP2A4UGR9 3374 aa7.46□□□□□ -1.22
CCDC88C-204ENST00000389857 HELZ2Q9BYK8 2649 aaKnown RBP7.45□□□□□ -1.22
CCDC88C-204ENST00000389857 ITPR3Q14573 2671 aa7.45□□□□□ -1.22
CCDC88C-204ENST00000389857 KRTAP4-16G5E9R7 235 aaPredicted RBP7.43□□□□□ -1.22
CCDC88C-204ENST00000389857 MAST4O15021 2626 aa7.43□□□□□ -1.22
CCDC88C-204ENST00000389857 KRTAP29-1A8MX34 341 aaPredicted RBP7.42□□□□□ -1.22
CCDC88C-204ENST00000389857 CFAP46Q8IYW2 2715 aa7.42□□□□□ -1.22
CCDC88C-204ENST00000389857 RPS29P62273 56 aaKnown RBP7.42□□□□□ -1.22
CCDC88C-204ENST00000389857 ATRQ13535 2644 aa7.39□□□□□ -1.23
CCDC88C-204ENST00000389857 A0A087X002 238 aa7.39□□□□□ -1.23
CCDC88C-204ENST00000389857 CENPEQ02224 2701 aa7.38□□□□□ -1.23
CCDC88C-204ENST00000389857 AKAP13Q12802 2813 aa7.38□□□□□ -1.23
CCDC88C-204ENST00000389857 KRTAP16-1A8MUX0 517 aa7.38□□□□□ -1.23
CCDC88C-204ENST00000389857 C20orf166-AS1Q96NR2 134 aa7.37□□□□□ -1.23
CCDC88C-204ENST00000389857 A8MUU9 505 aa7.37□□□□□ -1.23
CCDC88C-204ENST00000389857 EYSQ5T1H1 3165 aa7.36□□□□□ -1.23
CCDC88C-204ENST00000389857 KRTAP25-1Q3LHN0 102 aa7.34□□□□□ -1.24
CCDC88C-204ENST00000389857 TNRC18O15417 2968 aaPredicted RBP7.33□□□□□ -1.24
CCDC88C-204ENST00000389857 FRYLO94915 3013 aa7.32□□□□□ -1.24
CCDC88C-204ENST00000389857 FRYQ5TBA9 3013 aa7.32□□□□□ -1.24
CCDC88C-204ENST00000389857 COL6A3P12111 3177 aa7.31□□□□□ -1.24
CCDC88C-204ENST00000389857 NOTCH2NLQ7Z3S9 236 aa7.28□□□□□ -1.24
CCDC88C-204ENST00000389857 SPTBN5Q9NRC6 3674 aaKnown RBP7.25□□□□□ -1.25
CCDC88C-204ENST00000389857 A8MU10 97 aa7.24□□□□□ -1.25
CCDC88C-204ENST00000389857 SPEGQ15772 3267 aa7.24□□□□□ -1.25
CCDC88C-204ENST00000389857 ADGRG4Q8IZF6 3080 aa7.23□□□□□ -1.25
CCDC88C-204ENST00000389857 FREM2Q5SZK8 3169 aa7.23□□□□□ -1.25
CCDC88C-204ENST00000389857 A6NN06 94 aa7.23□□□□□ -1.25
CCDC88C-204ENST00000389857 STAB1Q9NY15 2570 aa7.22□□□□□ -1.25
CCDC88C-204ENST00000389857 CELSR3Q9NYQ7 3312 aa7.22□□□□□ -1.25
CCDC88C-204ENST00000389857 TNP1P09430 55 aa7.21□□□□□ -1.26
CCDC88C-204ENST00000389857 DMBT1Q9UGM3 2413 aaPredicted RBP7.18□□□□□ -1.26
CCDC88C-204ENST00000389857 BOD1L1Q8NFC6 3051 aa7.18□□□□□ -1.26
CCDC88C-204ENST00000389857 MAP1AP78559 2803 aaPredicted RBP7.18□□□□□ -1.26
CCDC88C-204ENST00000389857 MUC3AQ02505 3323 aa7.17□□□□□ -1.26
CCDC88C-204ENST00000389857 TEX15Q9BXT5 2789 aa7.16□□□□□ -1.26
CCDC88C-204ENST00000389857 KRTAP11-1Q8IUC1 163 aa7.16□□□□□ -1.26
CCDC88C-204ENST00000389857 CHD6Q8TD26 2715 aa7.16□□□□□ -1.26
CCDC88C-204ENST00000389857 Q6ZRN7 208 aaPredicted RBP7.16□□□□□ -1.26
CCDC88C-204ENST00000389857 NBEAL1Q6ZS30 2694 aa7.16□□□□□ -1.26
CCDC88C-204ENST00000389857 FLNCQ14315 2725 aa7.13□□□□□ -1.27
CCDC88C-204ENST00000389857 KRTAP13-2Q52LG2 175 aa7.12□□□□□ -1.27
CCDC88C-204ENST00000389857 TEP1Q99973 2627 aaKnown RBP7.11□□□□□ -1.27
CCDC88C-204ENST00000389857 NDUFAF8A1L188 74 aa7.11□□□□□ -1.27
CCDC88C-204ENST00000389857 C10orf95Q9H7T3 257 aa7.1□□□□□ -1.27
CCDC88C-204ENST00000389857 IGSF10Q6WRI0 2623 aa7.1□□□□□ -1.27
CCDC88C-204ENST00000389857 ATMQ13315 3056 aa7.09□□□□□ -1.27
CCDC88C-204ENST00000389857 KRTAP13-1Q8IUC0 172 aa7.09□□□□□ -1.27
CCDC88C-204ENST00000389857 TACC2O95359 2948 aa7.09□□□□□ -1.28
CCDC88C-204ENST00000389857 DMXL2Q8TDJ6 3036 aa7.08□□□□□ -1.28
CCDC88C-204ENST00000389857 KALRNO60229 2985 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms