RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 KRTAP26-1Q6PEX3 210 aa8.98□□□□□ -0.97
CHD4-201ENST00000357008 S4R3F8 94 aa8.96□□□□□ -0.97
CHD4-201ENST00000357008 AKAP13Q12802 2813 aa8.94□□□□□ -0.98
CHD4-201ENST00000357008 CEP350Q5VT06 3117 aa8.94□□□□□ -0.98
CHD4-201ENST00000357008 HELZ2Q9BYK8 2649 aaKnown RBP8.89□□□□□ -0.99
CHD4-201ENST00000357008 Q6ZR54 194 aa8.89□□□□□ -0.99
CHD4-201ENST00000357008 KRTAP1-5Q9BYS1 174 aa8.88□□□□□ -0.99
CHD4-201ENST00000357008 STAB1Q9NY15 2570 aa8.88□□□□□ -0.99
CHD4-201ENST00000357008 RPL37P61927 97 aaKnown RBP8.87□□□□□ -0.99
CHD4-201ENST00000357008 CHD6Q8TD26 2715 aa8.87□□□□□ -0.99
CHD4-201ENST00000357008 KRTAP29-1A8MX34 341 aaPredicted RBP8.87□□□□□ -0.99
CHD4-201ENST00000357008 KRTAP4-16G5E9R7 235 aaPredicted RBP8.86□□□□□ -0.99
CHD4-201ENST00000357008 A0A0A0MQY5 61 aa8.86□□□□□ -0.99
CHD4-201ENST00000357008 CENPEQ02224 2701 aa8.86□□□□□ -0.99
CHD4-201ENST00000357008 ASB16-AS1Q495Z4 193 aa8.85□□□□□ -0.99
CHD4-201ENST00000357008 ROMO1P60602 79 aa8.85□□□□□ -0.99
CHD4-201ENST00000357008 CFAP46Q8IYW2 2715 aa8.85□□□□□ -0.99
CHD4-201ENST00000357008 R4GN34 69 aa8.83□□□□□ -1
CHD4-201ENST00000357008 NBEAL1Q6ZS30 2694 aa8.83□□□□□ -1
CHD4-201ENST00000357008 FLG2Q5D862 2391 aaPredicted RBP8.82□□□□□ -1
CHD4-201ENST00000357008 CHD7Q9P2D1 2997 aa8.82□□□□□ -1
CHD4-201ENST00000357008 H1FX-AS1Q4G0G2 97 aa8.82□□□□□ -1
CHD4-201ENST00000357008 C5orf42Q9H799 3197 aa8.76□□□□□ -1.01
CHD4-201ENST00000357008 M0R2T5 61 aa8.75□□□□□ -1.01
CHD4-201ENST00000357008 UNC79Q9P2D8 2635 aa8.75□□□□□ -1.01
CHD4-201ENST00000357008 GCN1Q92616 2671 aaKnown RBP8.73□□□□□ -1.01
CHD4-201ENST00000357008 SPATA8Q6RVD6 105 aa8.71□□□□□ -1.01
CHD4-201ENST00000357008 CFAP54Q96N23 3096 aa8.71□□□□□ -1.02
CHD4-201ENST00000357008 TEX15Q9BXT5 2789 aa8.69□□□□□ -1.02
CHD4-201ENST00000357008 KRTAP10-1P60331 282 aa8.69□□□□□ -1.02
CHD4-201ENST00000357008 NOTCH1P46531 2555 aa8.68□□□□□ -1.02
CHD4-201ENST00000357008 SEC61BP60468 96 aaKnown RBP8.68□□□□□ -1.02
CHD4-201ENST00000357008 PANO1I0J062 215 aa8.67□□□□□ -1.02
CHD4-201ENST00000357008 DMBT1Q9UGM3 2413 aaPredicted RBP8.67□□□□□ -1.02
CHD4-201ENST00000357008 A0A0C4DFX4 3053 aa8.67□□□□□ -1.02
CHD4-201ENST00000357008 M0QZ58 72 aa8.65□□□□□ -1.02
CHD4-201ENST00000357008 CHD9Q3L8U1 2897 aa8.65□□□□□ -1.02
CHD4-201ENST00000357008 LCE6AA0A183 80 aa8.65□□□□□ -1.02
CHD4-201ENST00000357008 KRTAP10-2P60368 255 aa8.65□□□□□ -1.02
CHD4-201ENST00000357008 TEP1Q99973 2627 aaKnown RBP8.63□□□□□ -1.03
CHD4-201ENST00000357008 A6NN06 94 aa8.63□□□□□ -1.03
CHD4-201ENST00000357008 A0A087X002 238 aa8.62□□□□□ -1.03
CHD4-201ENST00000357008 NOTCH2NLQ7Z3S9 236 aa8.62□□□□□ -1.03
CHD4-201ENST00000357008 MGAQ8IWI9 3026 aa8.6□□□□□ -1.03
CHD4-201ENST00000357008 PCNTO95613 3336 aa8.59□□□□□ -1.03
CHD4-201ENST00000357008 Q5VSD8 79 aa8.58□□□□□ -1.04
CHD4-201ENST00000357008 ADM2Q7Z4H4 148 aa8.58□□□□□ -1.04
CHD4-201ENST00000357008 UTRNP46939 3433 aa8.56□□□□□ -1.04
CHD4-201ENST00000357008 NBEAL2Q6ZNJ1 2754 aa8.55□□□□□ -1.04
CHD4-201ENST00000357008 COL6A5A8TX70 2615 aa8.54□□□□□ -1.04
CHD4-201ENST00000357008 KRTAP25-1Q3LHN0 102 aa8.53□□□□□ -1.04
CHD4-201ENST00000357008 KRTAP11-1Q8IUC1 163 aa8.51□□□□□ -1.05
CHD4-201ENST00000357008 ZNF292O60281 2723 aa8.5□□□□□ -1.05
CHD4-201ENST00000357008 KRTAP7-1Q8IUC3 87 aa8.48□□□□□ -1.05
CHD4-201ENST00000357008 STAB2Q8WWQ8 2551 aa8.48□□□□□ -1.05
CHD4-201ENST00000357008 RPS29P62273 56 aaKnown RBP8.47□□□□□ -1.05
CHD4-201ENST00000357008 KRTAP16-1A8MUX0 517 aa8.45□□□□□ -1.06
CHD4-201ENST00000357008 TRANK1O15050 2925 aa8.45□□□□□ -1.06
CHD4-201ENST00000357008 A8MU10 97 aa8.44□□□□□ -1.06
CHD4-201ENST00000357008 SETXQ7Z333 2677 aaKnown RBP8.43□□□□□ -1.06
CHD4-201ENST00000357008 HTTP42858 3142 aa8.42□□□□□ -1.06
CHD4-201ENST00000357008 RANBP2P49792 3224 aaKnown RBP8.41□□□□□ -1.06
CHD4-201ENST00000357008 PLAC4Q8WY50 150 aa8.41□□□□□ -1.06
CHD4-201ENST00000357008 Q6ZRN7 208 aaPredicted RBP8.4□□□□□ -1.06
CHD4-201ENST00000357008 KRTAP13-1Q8IUC0 172 aa8.4□□□□□ -1.07
CHD4-201ENST00000357008 UBR5O95071 2799 aaPredicted RBP8.39□□□□□ -1.07
CHD4-201ENST00000357008 MAP1AP78559 2803 aaPredicted RBP8.38□□□□□ -1.07
CHD4-201ENST00000357008 LAMA2P24043 3122 aaKnown RBP8.37□□□□□ -1.07
CHD4-201ENST00000357008 WDFY4Q6ZS81 3184 aa8.35□□□□□ -1.07
CHD4-201ENST00000357008 KRTAP13-2Q52LG2 175 aa8.34□□□□□ -1.08
CHD4-201ENST00000357008 FRYQ5TBA9 3013 aa8.31□□□□□ -1.08
CHD4-201ENST00000357008 A8MUU9 505 aa8.31□□□□□ -1.08
CHD4-201ENST00000357008 NSD1Q96L73 2696 aaPredicted RBP8.31□□□□□ -1.08
CHD4-201ENST00000357008 DSPP15924 2871 aaKnown RBP8.28□□□□□ -1.08
CHD4-201ENST00000357008 TRIOO75962 3097 aa8.28□□□□□ -1.08
CHD4-201ENST00000357008 BAHCC1Q9P281 2608 aa8.28□□□□□ -1.08
CHD4-201ENST00000357008 NDUFAF8A1L188 74 aa8.27□□□□□ -1.09
CHD4-201ENST00000357008 MKI67P46013 3256 aaKnown RBP8.26□□□□□ -1.09
CHD4-201ENST00000357008 IGSF10Q6WRI0 2623 aa8.25□□□□□ -1.09
CHD4-201ENST00000357008 LAMA3Q16787 3333 aa8.22□□□□□ -1.09
CHD4-201ENST00000357008 C20orf166-AS1Q96NR2 134 aa8.19□□□□□ -1.1
CHD4-201ENST00000357008 ITPR2Q14571 2701 aa8.18□□□□□ -1.1
CHD4-201ENST00000357008 ITPR1Q14643 2758 aa8.17□□□□□ -1.1
CHD4-201ENST00000357008 VPS13AQ96RL7 3174 aa8.17□□□□□ -1.1
CHD4-201ENST00000357008 FREM2Q5SZK8 3169 aa8.16□□□□□ -1.1
CHD4-201ENST00000357008 KALRNO60229 2985 aa8.15□□□□□ -1.1
CHD4-201ENST00000357008 PRUNE2Q8WUY3 3088 aa8.15□□□□□ -1.11
CHD4-201ENST00000357008 APCP25054 2843 aa8.11□□□□□ -1.11
CHD4-201ENST00000357008 TNP1P09430 55 aa8.08□□□□□ -1.12
CHD4-201ENST00000357008 BRCA2P51587 3418 aa8.04□□□□□ -1.12
CHD4-201ENST00000357008 XIRP2A4UGR9 3374 aa8.03□□□□□ -1.12
CHD4-201ENST00000357008 UTP20O75691 2785 aaKnown RBP8.03□□□□□ -1.12
CHD4-201ENST00000357008 ASH1LQ9NR48 2969 aaKnown RBP8.03□□□□□ -1.12
CHD4-201ENST00000357008 TACC2O95359 2948 aa8.02□□□□□ -1.13
CHD4-201ENST00000357008 KMT2BQ9UMN6 2715 aaPredicted RBP8.02□□□□□ -1.13
CHD4-201ENST00000357008 NBEAQ8NFP9 2946 aa8□□□□□ -1.13
CHD4-201ENST00000357008 DMXL2Q8TDJ6 3036 aa8□□□□□ -1.13
CHD4-201ENST00000357008 UNC80Q8N2C7 3258 aa8□□□□□ -1.13
CHD4-201ENST00000357008 C10orf95Q9H7T3 257 aa7.98□□□□□ -1.13
CHD4-201ENST00000357008 FLNCQ14315 2725 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms