RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 ORMDL1Q9P0S3 153 aa11.3□□□□□ -0.6
CHMP4A-201ENST00000347519 BAALC-AS2P0C853 105 aa11.28□□□□□ -0.6
CHMP4A-201ENST00000347519 OCIAD2Q56VL3 154 aa11.28□□□□□ -0.6
CHMP4A-201ENST00000347519 A0A087X002 238 aa11.28□□□□□ -0.6
CHMP4A-201ENST00000347519 GTF2H5Q6ZYL4 71 aa11.27□□□□□ -0.61
CHMP4A-201ENST00000347519 PRO0461Q9UI25 63 aa11.26□□□□□ -0.61
CHMP4A-201ENST00000347519 SMCPP49901 116 aaPredicted RBP11.25□□□□□ -0.61
CHMP4A-201ENST00000347519 KRTAP13-2Q52LG2 175 aa11.25□□□□□ -0.61
CHMP4A-201ENST00000347519 FLG2Q5D862 2391 aaPredicted RBP11.24□□□□□ -0.61
CHMP4A-201ENST00000347519 FAM229BQ4G0N7 80 aa11.24□□□□□ -0.61
CHMP4A-201ENST00000347519 PPDPFLQ8WWR9 84 aa11.24□□□□□ -0.61
CHMP4A-201ENST00000347519 TNXBP22105 4242 aa11.23□□□□□ -0.61
CHMP4A-201ENST00000347519 PRR26Q8N8Z3 221 aa11.23□□□□□ -0.61
CHMP4A-201ENST00000347519 TMEM256-PLSCR3K7ERE1 68 aa11.22□□□□□ -0.61
CHMP4A-201ENST00000347519 MYCBP2O75592 4640 aa11.22□□□□□ -0.61
CHMP4A-201ENST00000347519 IGLV9-49A0A0B4J1Y8 123 aa11.21□□□□□ -0.61
CHMP4A-201ENST00000347519 NDUFV3P56181 108 aaKnown RBP11.21□□□□□ -0.61
CHMP4A-201ENST00000347519 LAMTOR3Q9UHA4 124 aa11.21□□□□□ -0.61
CHMP4A-201ENST00000347519 A0A1B0GV72 72 aa11.19□□□□□ -0.62
CHMP4A-201ENST00000347519 H3BQ85 93 aa11.19□□□□□ -0.62
CHMP4A-201ENST00000347519 H3BT86 120 aa11.19□□□□□ -0.62
CHMP4A-201ENST00000347519 CRYGAP11844 174 aa11.19□□□□□ -0.62
CHMP4A-201ENST00000347519 UBE2V1Q13404 147 aa11.19□□□□□ -0.62
CHMP4A-201ENST00000347519 HERC1Q15751 4861 aa11.19□□□□□ -0.62
CHMP4A-201ENST00000347519 GHRHP01286 108 aa11.18□□□□□ -0.62
CHMP4A-201ENST00000347519 ANKRD29Q8N6D5 301 aa11.18□□□□□ -0.62
CHMP4A-201ENST00000347519 LINC01600Q96MT4 127 aa11.18□□□□□ -0.62
CHMP4A-201ENST00000347519 MOBPQ13875 183 aa11.17□□□□□ -0.62
CHMP4A-201ENST00000347519 A0A0G2JQZ4 141 aa11.16□□□□□ -0.62
CHMP4A-201ENST00000347519 PCP4P48539 62 aa11.16□□□□□ -0.62
CHMP4A-201ENST00000347519 C9orf153Q5TBE3 101 aa11.16□□□□□ -0.62
CHMP4A-201ENST00000347519 DMBT1Q9UGM3 2413 aaPredicted RBP11.15□□□□□ -0.62
CHMP4A-201ENST00000347519 IGLV8-61A0A075B6I0 122 aa11.13□□□□□ -0.63
CHMP4A-201ENST00000347519 F8WEM9 126 aa11.13□□□□□ -0.63
CHMP4A-201ENST00000347519 KRTAP10-8P60410 259 aa11.13□□□□□ -0.63
CHMP4A-201ENST00000347519 F8W1H4 67 aa11.12□□□□□ -0.63
CHMP4A-201ENST00000347519 Q8NBF4 154 aa11.12□□□□□ -0.63
CHMP4A-201ENST00000347519 TYMSOSQ8TAI1 123 aa11.12□□□□□ -0.63
CHMP4A-201ENST00000347519 MT1HL1P0DM35 61 aa11.11□□□□□ -0.63
CHMP4A-201ENST00000347519 IGFL1Q6UW32 110 aa11.09□□□□□ -0.63
CHMP4A-201ENST00000347519 OBSCN-AS1Q96MR7 158 aa11.09□□□□□ -0.63
CHMP4A-201ENST00000347519 OXTP01178 125 aa11.08□□□□□ -0.64
CHMP4A-201ENST00000347519 SSBP3-AS1Q7Z2R9 100 aa11.08□□□□□ -0.64
CHMP4A-201ENST00000347519 C21orf62-AS1Q17RA5 79 aa11.07□□□□□ -0.64
CHMP4A-201ENST00000347519 KRTAP29-1A8MX34 341 aaPredicted RBP11.06□□□□□ -0.64
CHMP4A-201ENST00000347519 RBM3P98179 157 aaKnown RBP11.06□□□□□ -0.64
CHMP4A-201ENST00000347519 TRBV7-4A0A0J9YYF1 115 aa11.04□□□□□ -0.64
CHMP4A-201ENST00000347519 JMJD7-PLA2G4BH0Y9G9 81 aa11.04□□□□□ -0.64
CHMP4A-201ENST00000347519 ETDBQ3ZM63 59 aa11.04□□□□□ -0.64
CHMP4A-201ENST00000347519 J3QL48 77 aa11.03□□□□□ -0.64
CHMP4A-201ENST00000347519 Q6JHZ5 121 aa11.03□□□□□ -0.64
CHMP4A-201ENST00000347519 C14orf132Q9NPU4 83 aa11.03□□□□□ -0.64
CHMP4A-201ENST00000347519 HRCT1Q6UXD1 115 aa11.02□□□□□ -0.65
CHMP4A-201ENST00000347519 TEN1Q86WV5 123 aa11.02□□□□□ -0.65
CHMP4A-201ENST00000347519 A0A1W2PNM2 257 aa11.01□□□□□ -0.65
CHMP4A-201ENST00000347519 DSCR8Q96T75 97 aa11□□□□□ -0.65
CHMP4A-201ENST00000347519 LINC00304Q8N9R0 145 aa10.99□□□□□ -0.65
CHMP4A-201ENST00000347519 LOC110117498A0A087WWA1 95 aa10.98□□□□□ -0.65
CHMP4A-201ENST00000347519 Q6ZQT0 140 aa10.98□□□□□ -0.65
CHMP4A-201ENST00000347519 CCKP06307 115 aa10.95□□□□□ -0.66
CHMP4A-201ENST00000347519 VPS25Q9BRG1 176 aa10.93□□□□□ -0.66
CHMP4A-201ENST00000347519 CD164Q04900 197 aa10.92□□□□□ -0.66
CHMP4A-201ENST00000347519 Q6Q795 121 aa10.92□□□□□ -0.66
CHMP4A-201ENST00000347519 TRBV7-7A0A0K0K1E9 115 aa10.91□□□□□ -0.66
CHMP4A-201ENST00000347519 C4orf48Q5BLP8 95 aa10.91□□□□□ -0.66
CHMP4A-201ENST00000347519 SPAG11AQ6PDA7 123 aa10.9□□□□□ -0.66
CHMP4A-201ENST00000347519 PDE6GP18545 87 aa10.9□□□□□ -0.67
CHMP4A-201ENST00000347519 SPINK1P00995 79 aa10.88□□□□□ -0.67
CHMP4A-201ENST00000347519 A0A087WSZ3 146 aa10.86□□□□□ -0.67
CHMP4A-201ENST00000347519 RPS29P62273 56 aaKnown RBP10.81□□□□□ -0.68
CHMP4A-201ENST00000347519 Q5XG85 94 aa10.8□□□□□ -0.68
CHMP4A-201ENST00000347519 LIMD2Q9BT23 127 aa10.78□□□□□ -0.68
CHMP4A-201ENST00000347519 RETNLBQ9BQ08 111 aa10.77□□□□□ -0.68
CHMP4A-201ENST00000347519 A0A1B0GW54 56 aa10.75□□□□□ -0.69
CHMP4A-201ENST00000347519 ASB16-AS1Q495Z4 193 aa10.75□□□□□ -0.69
CHMP4A-201ENST00000347519 LINC00846Q9NV44 126 aa10.75□□□□□ -0.69
CHMP4A-201ENST00000347519 C1orf195Q5TG92 126 aa10.74□□□□□ -0.69
CHMP4A-201ENST00000347519 Q96NJ1 140 aa10.74□□□□□ -0.69
CHMP4A-201ENST00000347519 SS18L2Q9UHA2 77 aa10.74□□□□□ -0.69
CHMP4A-201ENST00000347519 DEFB116Q30KQ4 102 aa10.7□□□□□ -0.7
CHMP4A-201ENST00000347519 LINC00472Q9H8W2 130 aa10.7□□□□□ -0.7
CHMP4A-201ENST00000347519 Q6ZVQ6 151 aa10.68□□□□□ -0.7
CHMP4A-201ENST00000347519 HMCN2Q8NDA2 5059 aa10.67□□□□□ -0.7
CHMP4A-201ENST00000347519 NREPQ16612 68 aa10.67□□□□□ -0.7
CHMP4A-201ENST00000347519 FAM240AA0A1B0GVK7 77 aa10.66□□□□□ -0.7
CHMP4A-201ENST00000347519 ACYP1P07311 99 aa10.65□□□□□ -0.71
CHMP4A-201ENST00000347519 J3QR89 54 aa10.62□□□□□ -0.71
CHMP4A-201ENST00000347519 IGKV4-1P06312 121 aa10.62□□□□□ -0.71
CHMP4A-201ENST00000347519 UBL5Q9BZL1 73 aa10.61□□□□□ -0.71
CHMP4A-201ENST00000347519 PRR4Q16378 134 aa10.6□□□□□ -0.71
CHMP4A-201ENST00000347519 UBR4Q5T4S7 5183 aa10.6□□□□□ -0.71
CHMP4A-201ENST00000347519 SIGMAR1Q99720 223 aa10.58□□□□□ -0.72
CHMP4A-201ENST00000347519 FP248Q71RG6 208 aaPredicted RBP10.57□□□□□ -0.72
CHMP4A-201ENST00000347519 K7ERU9 68 aa10.56□□□□□ -0.72
CHMP4A-201ENST00000347519 IGLV7-46A0A075B6I9 117 aa10.55□□□□□ -0.72
CHMP4A-201ENST00000347519 DSCR10P59022 87 aa10.55□□□□□ -0.72
CHMP4A-201ENST00000347519 CDIP1Q9H305 208 aa10.55□□□□□ -0.72
CHMP4A-201ENST00000347519 BPY2O14599 106 aa10.54□□□□□ -0.72
CHMP4A-201ENST00000347519 LPAP08519 4548 aa10.53□□□□□ -0.72
CHMP4A-201ENST00000347519 J3KT08 172 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms