RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 UBL5Q9BZL1 73 aa8.19□□□□□ -1.1
HMGB1-202ENST00000339872 SPRR1BP22528 89 aa8.18□□□□□ -1.1
HMGB1-202ENST00000339872 TRBV7-7A0A0K0K1E9 115 aa8.17□□□□□ -1.1
HMGB1-202ENST00000339872 SCGB1A1P11684 91 aa8.17□□□□□ -1.1
HMGB1-202ENST00000339872 Q6JHZ5 121 aa8.17□□□□□ -1.1
HMGB1-202ENST00000339872 SRRM2Q9UQ35 2752 aaKnown RBP8.16□□□□□ -1.1
HMGB1-202ENST00000339872 IGKV3D-7A0A0C4DH55 119 aa8.16□□□□□ -1.1
HMGB1-202ENST00000339872 ZNF861PO60384 105 aa8.16□□□□□ -1.1
HMGB1-202ENST00000339872 PCP4P48539 62 aa8.15□□□□□ -1.1
HMGB1-202ENST00000339872 A0A1W2PNM2 257 aa8.15□□□□□ -1.1
HMGB1-202ENST00000339872 IGLV7-43P04211 117 aa8.14□□□□□ -1.11
HMGB1-202ENST00000339872 Q6Q795 121 aa8.14□□□□□ -1.11
HMGB1-202ENST00000339872 Q6ZVQ6 151 aa8.14□□□□□ -1.11
HMGB1-202ENST00000339872 SPRR4Q96PI1 79 aa8.14□□□□□ -1.11
HMGB1-202ENST00000339872 Q8NBF4 154 aa8.14□□□□□ -1.11
HMGB1-202ENST00000339872 IGLV8-61A0A075B6I0 122 aa8.13□□□□□ -1.11
HMGB1-202ENST00000339872 A0A0G2JQZ4 141 aa8.13□□□□□ -1.11
HMGB1-202ENST00000339872 IGFL1Q6UW32 110 aa8.13□□□□□ -1.11
HMGB1-202ENST00000339872 ZNF706Q9Y5V0 76 aaPredicted RBP8.13□□□□□ -1.11
HMGB1-202ENST00000339872 IMUPQ9GZP8 106 aa8.12□□□□□ -1.11
HMGB1-202ENST00000339872 ATP5EP2Q5VTU8 51 aa8.11□□□□□ -1.11
HMGB1-202ENST00000339872 A0A1B0GVY2 172 aa8.11□□□□□ -1.11
HMGB1-202ENST00000339872 RYR2Q92736 4967 aa8.1□□□□□ -1.11
HMGB1-202ENST00000339872 LINC00483Q53H64 154 aa8.1□□□□□ -1.11
HMGB1-202ENST00000339872 A0A1B0GW54 56 aa8.09□□□□□ -1.11
HMGB1-202ENST00000339872 IGLV9-49A0A0B4J1Y8 123 aa8.08□□□□□ -1.12
HMGB1-202ENST00000339872 PKHD1P08F94 4074 aa8.08□□□□□ -1.12
HMGB1-202ENST00000339872 NREPQ16612 68 aa8.08□□□□□ -1.12
HMGB1-202ENST00000339872 KMT2CQ8NEZ4 4911 aaKnown RBP8.07□□□□□ -1.12
HMGB1-202ENST00000339872 CRYGAP11844 174 aa8.07□□□□□ -1.12
HMGB1-202ENST00000339872 C9orf153Q5TBE3 101 aa8.07□□□□□ -1.12
HMGB1-202ENST00000339872 HIST1H4AP62805 103 aaKnown RBP8.07□□□□□ -1.12
HMGB1-202ENST00000339872 ANAPC11Q9NYG5 84 aa8.07□□□□□ -1.12
HMGB1-202ENST00000339872 A0A087WVE0 104 aa8.05□□□□□ -1.12
HMGB1-202ENST00000339872 FAM236AA0A1B0GUQ0 79 aa8.05□□□□□ -1.12
HMGB1-202ENST00000339872 FAM236BA0A1B0GV22 79 aa8.05□□□□□ -1.12
HMGB1-202ENST00000339872 CXCL6P80162 114 aa8.04□□□□□ -1.12
HMGB1-202ENST00000339872 A0A087WSZ3 146 aa8.03□□□□□ -1.12
HMGB1-202ENST00000339872 MOBPQ13875 183 aa8.02□□□□□ -1.13
HMGB1-202ENST00000339872 LRP1BQ9NZR2 4599 aa8.02□□□□□ -1.13
HMGB1-202ENST00000339872 BPY2O14599 106 aa8.01□□□□□ -1.13
HMGB1-202ENST00000339872 ANAPC13Q9BS18 74 aa8□□□□□ -1.13
HMGB1-202ENST00000339872 RPL37AP61513 92 aaKnown RBP7.99□□□□□ -1.13
HMGB1-202ENST00000339872 Q8N9L7 120 aa7.97□□□□□ -1.13
HMGB1-202ENST00000339872 DYNC1H1Q14204 4646 aaKnown RBP7.97□□□□□ -1.13
HMGB1-202ENST00000339872 SMR3BP02814 79 aaPredicted RBP7.96□□□□□ -1.13
HMGB1-202ENST00000339872 HRCT1Q6UXD1 115 aa7.96□□□□□ -1.13
HMGB1-202ENST00000339872 VPS13BQ7Z7G8 4022 aa7.95□□□□□ -1.14
HMGB1-202ENST00000339872 DEFB116Q30KQ4 102 aa7.94□□□□□ -1.14
HMGB1-202ENST00000339872 IGKV4-1P06312 121 aa7.94□□□□□ -1.14
HMGB1-202ENST00000339872 A0A087X002 238 aa7.92□□□□□ -1.14
HMGB1-202ENST00000339872 ATOX1O00244 68 aa7.92□□□□□ -1.14
HMGB1-202ENST00000339872 DSCR10P59022 87 aa7.91□□□□□ -1.14
HMGB1-202ENST00000339872 KRTAP1-4P0C5Y4 121 aa7.9□□□□□ -1.14
HMGB1-202ENST00000339872 FAM229BQ4G0N7 80 aa7.9□□□□□ -1.14
HMGB1-202ENST00000339872 K7EQZ3 153 aa7.89□□□□□ -1.15
HMGB1-202ENST00000339872 SSBP3-AS1Q7Z2R9 100 aa7.89□□□□□ -1.15
HMGB1-202ENST00000339872 APOBP04114 4563 aaKnown RBP7.89□□□□□ -1.15
HMGB1-202ENST00000339872 KRTAP13-2Q52LG2 175 aa7.89□□□□□ -1.15
HMGB1-202ENST00000339872 LINC00472Q9H8W2 130 aa7.89□□□□□ -1.15
HMGB1-202ENST00000339872 RYR3Q15413 4870 aa7.89□□□□□ -1.15
HMGB1-202ENST00000339872 SPINK6Q6UWN8 80 aa7.88□□□□□ -1.15
HMGB1-202ENST00000339872 SS18L2Q9UHA2 77 aa7.88□□□□□ -1.15
HMGB1-202ENST00000339872 PLA2G1BP04054 148 aaKnown RBP7.86□□□□□ -1.15
HMGB1-202ENST00000339872 CD164Q04900 197 aa7.84□□□□□ -1.15
HMGB1-202ENST00000339872 Q96NJ1 140 aa7.84□□□□□ -1.15
HMGB1-202ENST00000339872 KRTAP10-4P60372 401 aaPredicted RBP7.84□□□□□ -1.15
HMGB1-202ENST00000339872 CCDC179H3BU77 68 aa7.83□□□□□ -1.16
HMGB1-202ENST00000339872 A8MWP4 228 aa7.81□□□□□ -1.16
HMGB1-202ENST00000339872 J3KT08 172 aa7.81□□□□□ -1.16
HMGB1-202ENST00000339872 SERP2Q8N6R1 65 aa7.81□□□□□ -1.16
HMGB1-202ENST00000339872 COX7CP15954 63 aa7.8□□□□□ -1.16
HMGB1-202ENST00000339872 TYMSOSQ8TAI1 123 aa7.8□□□□□ -1.16
HMGB1-202ENST00000339872 PRR15Q8IV56 129 aa7.79□□□□□ -1.16
HMGB1-202ENST00000339872 HCG22E2RYF7 251 aa7.79□□□□□ -1.16
HMGB1-202ENST00000339872 UQCRQO14949 82 aa7.79□□□□□ -1.16
HMGB1-202ENST00000339872 FAT1Q14517 4588 aa7.78□□□□□ -1.16
HMGB1-202ENST00000339872 SMIM20Q8N5G0 67 aa7.77□□□□□ -1.17
HMGB1-202ENST00000339872 PRR26Q8N8Z3 221 aa7.77□□□□□ -1.17
HMGB1-202ENST00000339872 NDUFB1O75438 58 aa7.77□□□□□ -1.17
HMGB1-202ENST00000339872 CDK2AP2O75956 126 aa7.77□□□□□ -1.17
HMGB1-202ENST00000339872 WFDC13Q8IUB5 93 aa7.77□□□□□ -1.17
HMGB1-202ENST00000339872 TRAV7A0A075B6U4 112 aa7.76□□□□□ -1.17
HMGB1-202ENST00000339872 FAM229AH3BQW9 127 aa7.76□□□□□ -1.17
HMGB1-202ENST00000339872 C4orf48Q5BLP8 95 aa7.74□□□□□ -1.17
HMGB1-202ENST00000339872 ASB16-AS1Q495Z4 193 aa7.73□□□□□ -1.17
HMGB1-202ENST00000339872 Q5VSD8 79 aa7.72□□□□□ -1.17
HMGB1-202ENST00000339872 CASC2Q6XLA1 102 aa7.72□□□□□ -1.17
HMGB1-202ENST00000339872 OCR1Q9BZK8 76 aa7.72□□□□□ -1.17
HMGB1-202ENST00000339872 LIMD2Q9BT23 127 aa7.72□□□□□ -1.17
HMGB1-202ENST00000339872 IGHV6-1A0A0B4J1U7 121 aa7.71□□□□□ -1.18
HMGB1-202ENST00000339872 A0A1B0GVX0 72 aa7.71□□□□□ -1.18
HMGB1-202ENST00000339872 Q5XG85 94 aa7.71□□□□□ -1.18
HMGB1-202ENST00000339872 MMP24-AS1A0A0U1RRL7 71 aa7.7□□□□□ -1.18
HMGB1-202ENST00000339872 KRTAP29-1A8MX34 341 aaPredicted RBP7.7□□□□□ -1.18
HMGB1-202ENST00000339872 LINC00304Q8N9R0 145 aa7.7□□□□□ -1.18
HMGB1-202ENST00000339872 SPINK1P00995 79 aa7.69□□□□□ -1.18
HMGB1-202ENST00000339872 HSPG2P98160 4391 aa7.69□□□□□ -1.18
HMGB1-202ENST00000339872 C8orf17Q9NRJ1 99 aa7.68□□□□□ -1.18
HMGB1-202ENST00000339872 C1orf195Q5TG92 126 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms