RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 HTN3P15516 51 aa5.01□□□□□ -1.61
TDP1-201ENST00000335725 FAM229AH3BQW9 127 aa5□□□□□ -1.61
TDP1-201ENST00000335725 ASPMQ8IZT6 3477 aa5□□□□□ -1.61
TDP1-201ENST00000335725 KMT2BQ9UMN6 2715 aaPredicted RBP5□□□□□ -1.61
TDP1-201ENST00000335725 ANAPC11Q9NYG5 84 aa4.99□□□□□ -1.61
TDP1-201ENST00000335725 RIF1Q5UIP0 2472 aaKnown RBP4.99□□□□□ -1.61
TDP1-201ENST00000335725 ATMQ13315 3056 aa4.99□□□□□ -1.61
TDP1-201ENST00000335725 Q6ZSA8 131 aa4.99□□□□□ -1.61
TDP1-201ENST00000335725 KRTAP7-1Q8IUC3 87 aa4.99□□□□□ -1.61
TDP1-201ENST00000335725 A0A096LNI7 61 aa4.98□□□□□ -1.61
TDP1-201ENST00000335725 SPART-AS1P0CW21 52 aa4.98□□□□□ -1.61
TDP1-201ENST00000335725 IGKV2-30P06310 120 aa4.98□□□□□ -1.61
TDP1-201ENST00000335725 A0A1B0GU33 70 aa4.97□□□□□ -1.61
TDP1-201ENST00000335725 SPTBN4Q9H254 2564 aa4.96□□□□□ -1.62
TDP1-201ENST00000335725 ABCA2Q9BZC7 2435 aa4.96□□□□□ -1.62
TDP1-201ENST00000335725 NBDYA0A0U1RRE5 68 aa4.95□□□□□ -1.62
TDP1-201ENST00000335725 ASH1LQ9NR48 2969 aaKnown RBP4.95□□□□□ -1.62
TDP1-201ENST00000335725 DCHS2Q6V1P9 2916 aa4.95□□□□□ -1.62
TDP1-201ENST00000335725 LRBAP50851 2863 aa4.94□□□□□ -1.62
TDP1-201ENST00000335725 DEFB4AO15263 64 aa4.94□□□□□ -1.62
TDP1-201ENST00000335725 OTOGQ6ZRI0 2925 aa4.93□□□□□ -1.62
TDP1-201ENST00000335725 CIRBP-AS1Q8TBR5 109 aa4.93□□□□□ -1.62
TDP1-201ENST00000335725 H3BNG1 76 aa4.93□□□□□ -1.62
TDP1-201ENST00000335725 LINC01556Q5JQF7 62 aa4.93□□□□□ -1.62
TDP1-201ENST00000335725 IGKV2D-30A0A075B6S6 120 aa4.92□□□□□ -1.62
TDP1-201ENST00000335725 RELNP78509 3460 aa4.92□□□□□ -1.62
TDP1-201ENST00000335725 H1FX-AS1Q4G0G2 97 aa4.92□□□□□ -1.62
TDP1-201ENST00000335725 PIEZO1Q92508 2521 aa4.91□□□□□ -1.62
TDP1-201ENST00000335725 NCOR2Q9Y618 2525 aa4.91□□□□□ -1.62
TDP1-201ENST00000335725 CSPG4Q6UVK1 2322 aa4.91□□□□□ -1.62
TDP1-201ENST00000335725 ZFHX2Q9C0A1 2572 aaPredicted RBP4.9□□□□□ -1.62
TDP1-201ENST00000335725 SPINK1P00995 79 aa4.9□□□□□ -1.62
TDP1-201ENST00000335725 LAMA5O15230 3695 aa4.9□□□□□ -1.63
TDP1-201ENST00000335725 TLN1Q9Y490 2541 aaKnown RBP4.9□□□□□ -1.63
TDP1-201ENST00000335725 EYSQ5T1H1 3165 aa4.89□□□□□ -1.63
TDP1-201ENST00000335725 DEFB135Q30KP9 77 aa4.89□□□□□ -1.63
TDP1-201ENST00000335725 TPRXLQ17RH7 258 aa4.88□□□□□ -1.63
TDP1-201ENST00000335725 NBASA2RRP1 2371 aa4.87□□□□□ -1.63
TDP1-201ENST00000335725 TENM2Q9NT68 2774 aa4.87□□□□□ -1.63
TDP1-201ENST00000335725 CELSR1Q9NYQ6 3014 aa4.86□□□□□ -1.63
TDP1-201ENST00000335725 SVEP1Q4LDE5 3571 aa4.86□□□□□ -1.63
TDP1-201ENST00000335725 FLG2Q5D862 2391 aaPredicted RBP4.86□□□□□ -1.63
TDP1-201ENST00000335725 CAMK2N1Q7Z7J9 78 aa4.85□□□□□ -1.63
TDP1-201ENST00000335725 TLN2Q9Y4G6 2542 aa4.84□□□□□ -1.63
TDP1-201ENST00000335725 ZNF292O60281 2723 aa4.84□□□□□ -1.63
TDP1-201ENST00000335725 CELSR2Q9HCU4 2923 aa4.84□□□□□ -1.63
TDP1-201ENST00000335725 SPINK6Q6UWN8 80 aa4.83□□□□□ -1.64
TDP1-201ENST00000335725 FN1P02751 2386 aaKnown RBP4.83□□□□□ -1.64
TDP1-201ENST00000335725 HRNRQ86YZ3 2850 aaPredicted RBP4.83□□□□□ -1.64
TDP1-201ENST00000335725 C14orf177Q52M58 125 aa4.82□□□□□ -1.64
TDP1-201ENST00000335725 F8P00451 2351 aa4.82□□□□□ -1.64
TDP1-201ENST00000335725 APCP25054 2843 aa4.82□□□□□ -1.64
TDP1-201ENST00000335725 NF1P21359 2839 aa4.81□□□□□ -1.64
TDP1-201ENST00000335725 RPL37P61927 97 aaKnown RBP4.8□□□□□ -1.64
TDP1-201ENST00000335725 COX6B2Q6YFQ2 88 aa4.8□□□□□ -1.64
TDP1-201ENST00000335725 CACNA1AO00555 2505 aa4.8□□□□□ -1.64
TDP1-201ENST00000335725 ATRXP46100 2492 aa4.8□□□□□ -1.64
TDP1-201ENST00000335725 JMJD1CQ15652 2540 aa4.79□□□□□ -1.64
TDP1-201ENST00000335725 AKAP9Q99996 3911 aa4.79□□□□□ -1.64
TDP1-201ENST00000335725 TYMSOSQ8TAI1 123 aa4.77□□□□□ -1.65
TDP1-201ENST00000335725 CRYBG3Q68DQ2 2970 aa4.77□□□□□ -1.65
TDP1-201ENST00000335725 NBPF19A0A087WUL8 3843 aa4.75□□□□□ -1.65
TDP1-201ENST00000335725 KRTAP13-1Q8IUC0 172 aa4.75□□□□□ -1.65
TDP1-201ENST00000335725 C10orf95Q9H7T3 257 aa4.75□□□□□ -1.65
TDP1-201ENST00000335725 TEX15Q9BXT5 2789 aa4.74□□□□□ -1.65
TDP1-201ENST00000335725 PTPN13Q12923 2485 aa4.74□□□□□ -1.65
TDP1-201ENST00000335725 SONP18583 2426 aaKnown RBP4.74□□□□□ -1.65
TDP1-201ENST00000335725 ZNF462Q96JM2 2506 aa4.73□□□□□ -1.65
TDP1-201ENST00000335725 KRTAP24-1Q3LI83 254 aa4.73□□□□□ -1.65
TDP1-201ENST00000335725 WWC2-AS2Q96NR7 200 aa4.73□□□□□ -1.65
TDP1-201ENST00000335725 MAPK1IP1LQ8NDC0 245 aa4.72□□□□□ -1.65
TDP1-201ENST00000335725 SETXQ7Z333 2677 aaKnown RBP4.72□□□□□ -1.65
TDP1-201ENST00000335725 ZFYVE26Q68DK2 2539 aa4.71□□□□□ -1.65
TDP1-201ENST00000335725 Q8N1X5 172 aa4.71□□□□□ -1.65
TDP1-201ENST00000335725 J3QKU1 62 aa4.71□□□□□ -1.66
TDP1-201ENST00000335725 USP9XQ93008 2570 aaPredicted RBP4.7□□□□□ -1.66
TDP1-201ENST00000335725 ACACBO00763 2458 aa4.7□□□□□ -1.66
TDP1-201ENST00000335725 UBR5O95071 2799 aaPredicted RBP4.69□□□□□ -1.66
TDP1-201ENST00000335725 ANKRD11Q6UB99 2663 aaPredicted RBP4.69□□□□□ -1.66
TDP1-201ENST00000335725 CEP295Q9C0D2 2601 aa4.69□□□□□ -1.66
TDP1-201ENST00000335725 NBEAL2Q6ZNJ1 2754 aa4.68□□□□□ -1.66
TDP1-201ENST00000335725 UTP20O75691 2785 aaKnown RBP4.68□□□□□ -1.66
TDP1-201ENST00000335725 MYO9AB2RTY4 2548 aa4.67□□□□□ -1.66
TDP1-201ENST00000335725 MUC3AQ02505 3323 aa4.67□□□□□ -1.66
TDP1-201ENST00000335725 NAV2Q8IVL1 2488 aa4.66□□□□□ -1.66
TDP1-201ENST00000335725 PKD1L2Q7Z442 2459 aa4.65□□□□□ -1.66
TDP1-201ENST00000335725 HIVEP3Q5T1R4 2406 aa4.65□□□□□ -1.67
TDP1-201ENST00000335725 GCN1Q92616 2671 aaKnown RBP4.64□□□□□ -1.67
TDP1-201ENST00000335725 HIVEP2P31629 2446 aa4.63□□□□□ -1.67
TDP1-201ENST00000335725 FAM208BQ5VWN6 2430 aa4.63□□□□□ -1.67
TDP1-201ENST00000335725 CSMD2Q7Z408 3487 aa4.62□□□□□ -1.67
TDP1-201ENST00000335725 CHD8Q9HCK8 2581 aa4.62□□□□□ -1.67
TDP1-201ENST00000335725 PLAC4Q8WY50 150 aa4.62□□□□□ -1.67
TDP1-201ENST00000335725 MTORP42345 2549 aa4.61□□□□□ -1.67
TDP1-201ENST00000335725 BSNQ9UPA5 3926 aa4.6□□□□□ -1.67
TDP1-201ENST00000335725 USP24Q9UPU5 2620 aa4.6□□□□□ -1.67
TDP1-201ENST00000335725 APLNQ9ULZ1 77 aa4.6□□□□□ -1.67
TDP1-201ENST00000335725 A0A0D9SG42 100 aa4.57□□□□□ -1.68
TDP1-201ENST00000335725 UNC79Q9P2D8 2635 aa4.55□□□□□ -1.68
TDP1-201ENST00000335725 S4R3F8 94 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms