RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 MAP1AP78559 2803 aaPredicted RBP6.49□□□□□ -1.37
CHD3-201ENST00000330494 DSPP15924 2871 aaKnown RBP6.49□□□□□ -1.37
CHD3-201ENST00000330494 SPRR4Q96PI1 79 aa6.49□□□□□ -1.37
CHD3-201ENST00000330494 MAST4O15021 2626 aa6.49□□□□□ -1.37
CHD3-201ENST00000330494 FRYLO94915 3013 aa6.49□□□□□ -1.37
CHD3-201ENST00000330494 M0R2T5 61 aa6.48□□□□□ -1.37
CHD3-201ENST00000330494 BOD1L1Q8NFC6 3051 aa6.47□□□□□ -1.37
CHD3-201ENST00000330494 CNBPP62633 177 aaKnown RBP6.47□□□□□ -1.37
CHD3-201ENST00000330494 Q5XG85 94 aa6.47□□□□□ -1.37
CHD3-201ENST00000330494 A0A1W2PNM2 257 aa6.47□□□□□ -1.37
CHD3-201ENST00000330494 Q1T7F1 81 aa6.47□□□□□ -1.37
CHD3-201ENST00000330494 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.47□□□□□ -1.37
CHD3-201ENST00000330494 CFAP47Q6ZTR5 3102 aa6.47□□□□□ -1.37
CHD3-201ENST00000330494 TEX15Q9BXT5 2789 aa6.45□□□□□ -1.38
CHD3-201ENST00000330494 Q8N1X5 172 aa6.45□□□□□ -1.38
CHD3-201ENST00000330494 A0A0D9SG42 100 aa6.44□□□□□ -1.38
CHD3-201ENST00000330494 FAM229BQ4G0N7 80 aa6.44□□□□□ -1.38
CHD3-201ENST00000330494 KALRNO60229 2985 aa6.43□□□□□ -1.38
CHD3-201ENST00000330494 PRAC1Q96KF2 57 aa6.43□□□□□ -1.38
CHD3-201ENST00000330494 IGLV5-37A0A075B6J1 123 aa6.42□□□□□ -1.38
CHD3-201ENST00000330494 FAM104AQ969W3 186 aa6.42□□□□□ -1.38
CHD3-201ENST00000330494 ZNF292O60281 2723 aa6.42□□□□□ -1.38
CHD3-201ENST00000330494 SPANXA2-OT1Q8N9U9 137 aa6.41□□□□□ -1.38
CHD3-201ENST00000330494 WDFY3Q8IZQ1 3526 aa6.4□□□□□ -1.38
CHD3-201ENST00000330494 TEP1Q99973 2627 aaKnown RBP6.4□□□□□ -1.38
CHD3-201ENST00000330494 PRR26Q8N8Z3 221 aa6.4□□□□□ -1.38
CHD3-201ENST00000330494 LRBAP50851 2863 aa6.4□□□□□ -1.39
CHD3-201ENST00000330494 LUZP6Q538Z0 58 aa6.38□□□□□ -1.39
CHD3-201ENST00000330494 CYSTM1Q9H1C7 97 aa6.38□□□□□ -1.39
CHD3-201ENST00000330494 IGLV5-48A0A075B6I7 105 aa6.38□□□□□ -1.39
CHD3-201ENST00000330494 Q8NDZ9 215 aa6.37□□□□□ -1.39
CHD3-201ENST00000330494 FP248Q71RG6 208 aaPredicted RBP6.37□□□□□ -1.39
CHD3-201ENST00000330494 Q75L30 129 aa6.36□□□□□ -1.39
CHD3-201ENST00000330494 OCR1Q9BZK8 76 aa6.35□□□□□ -1.39
CHD3-201ENST00000330494 DMXL2Q8TDJ6 3036 aa6.32□□□□□ -1.4
CHD3-201ENST00000330494 CSAG1Q6PB30 78 aa6.31□□□□□ -1.4
CHD3-201ENST00000330494 ADGRG4Q8IZF6 3080 aa6.31□□□□□ -1.4
CHD3-201ENST00000330494 KRTAP1-5Q9BYS1 174 aa6.3□□□□□ -1.4
CHD3-201ENST00000330494 IGLV7-46A0A075B6I9 117 aa6.29□□□□□ -1.4
CHD3-201ENST00000330494 ASPMQ8IZT6 3477 aa6.29□□□□□ -1.4
CHD3-201ENST00000330494 GCN1Q92616 2671 aaKnown RBP6.28□□□□□ -1.4
CHD3-201ENST00000330494 ATMQ13315 3056 aa6.28□□□□□ -1.4
CHD3-201ENST00000330494 NBEAQ8NFP9 2946 aa6.28□□□□□ -1.4
CHD3-201ENST00000330494 Q5VV11 94 aa6.28□□□□□ -1.4
CHD3-201ENST00000330494 NBEAL2Q6ZNJ1 2754 aa6.27□□□□□ -1.4
CHD3-201ENST00000330494 Q8N9P0 234 aaPredicted RBP6.27□□□□□ -1.41
CHD3-201ENST00000330494 Q6ZSA8 131 aa6.27□□□□□ -1.41
CHD3-201ENST00000330494 OXTP01178 125 aa6.26□□□□□ -1.41
CHD3-201ENST00000330494 TNRC18O15417 2968 aaPredicted RBP6.25□□□□□ -1.41
CHD3-201ENST00000330494 COL12A1Q99715 3063 aa6.25□□□□□ -1.41
CHD3-201ENST00000330494 IGSF10Q6WRI0 2623 aa6.24□□□□□ -1.41
CHD3-201ENST00000330494 PLAC8Q9NZF1 115 aa6.24□□□□□ -1.41
CHD3-201ENST00000330494 LINC01558Q9Y6Z2 57 aa6.23□□□□□ -1.41
CHD3-201ENST00000330494 SPINK7P58062 85 aa6.23□□□□□ -1.41
CHD3-201ENST00000330494 CRYBG3Q68DQ2 2970 aa6.23□□□□□ -1.41
CHD3-201ENST00000330494 KRTAP10-2P60368 255 aa6.22□□□□□ -1.41
CHD3-201ENST00000330494 LOC400499M0QZD8 3231 aa6.22□□□□□ -1.41
CHD3-201ENST00000330494 A0A1B0GU33 70 aa6.22□□□□□ -1.41
CHD3-201ENST00000330494 DMXL1Q9Y485 3027 aa6.21□□□□□ -1.41
CHD3-201ENST00000330494 CAMK2N1Q7Z7J9 78 aa6.21□□□□□ -1.41
CHD3-201ENST00000330494 TACC2O95359 2948 aa6.21□□□□□ -1.41
CHD3-201ENST00000330494 A0A0A0MQY5 61 aa6.21□□□□□ -1.42
CHD3-201ENST00000330494 UNC79Q9P2D8 2635 aa6.21□□□□□ -1.42
CHD3-201ENST00000330494 HRES1P13985 223 aa6.2□□□□□ -1.42
CHD3-201ENST00000330494 KRTAP10-1P60331 282 aa6.19□□□□□ -1.42
CHD3-201ENST00000330494 SETXQ7Z333 2677 aaKnown RBP6.19□□□□□ -1.42
CHD3-201ENST00000330494 COL6A5A8TX70 2615 aa6.19□□□□□ -1.42
CHD3-201ENST00000330494 BAHCC1Q9P281 2608 aa6.19□□□□□ -1.42
CHD3-201ENST00000330494 NBEAL1Q6ZS30 2694 aa6.18□□□□□ -1.42
CHD3-201ENST00000330494 ITPR2Q14571 2701 aa6.18□□□□□ -1.42
CHD3-201ENST00000330494 KRTAP26-1Q6PEX3 210 aa6.17□□□□□ -1.42
CHD3-201ENST00000330494 MMP24-AS1A0A0U1RRL7 71 aa6.16□□□□□ -1.42
CHD3-201ENST00000330494 Q5VSD8 79 aa6.16□□□□□ -1.42
CHD3-201ENST00000330494 SPRR1AP35321 89 aa6.16□□□□□ -1.42
CHD3-201ENST00000330494 PANO1I0J062 215 aa6.15□□□□□ -1.42
CHD3-201ENST00000330494 DMAC1Q96GE9 116 aa6.15□□□□□ -1.42
CHD3-201ENST00000330494 STAB1Q9NY15 2570 aa6.15□□□□□ -1.42
CHD3-201ENST00000330494 ASH1LQ9NR48 2969 aaKnown RBP6.14□□□□□ -1.43
CHD3-201ENST00000330494 NOTCH1P46531 2555 aa6.14□□□□□ -1.43
CHD3-201ENST00000330494 FLG2Q5D862 2391 aaPredicted RBP6.14□□□□□ -1.43
CHD3-201ENST00000330494 UTP20O75691 2785 aaKnown RBP6.13□□□□□ -1.43
CHD3-201ENST00000330494 DCHS1Q96JQ0 3298 aa6.13□□□□□ -1.43
CHD3-201ENST00000330494 ZCCHC13Q8WW36 166 aaKnown RBP6.13□□□□□ -1.43
CHD3-201ENST00000330494 LINC00483Q53H64 154 aa6.13□□□□□ -1.43
CHD3-201ENST00000330494 ZZEF1O43149 2961 aa6.12□□□□□ -1.43
CHD3-201ENST00000330494 UBR5O95071 2799 aaPredicted RBP6.11□□□□□ -1.43
CHD3-201ENST00000330494 Q5W150 140 aa6.09□□□□□ -1.43
CHD3-201ENST00000330494 S4R3F8 94 aa6.09□□□□□ -1.43
CHD3-201ENST00000330494 LCE6AA0A183 80 aa6.09□□□□□ -1.43
CHD3-201ENST00000330494 LINC00472Q9H8W2 130 aa6.09□□□□□ -1.43
CHD3-201ENST00000330494 ITPR1Q14643 2758 aa6.08□□□□□ -1.44
CHD3-201ENST00000330494 LAMA5O15230 3695 aa6.06□□□□□ -1.44
CHD3-201ENST00000330494 ZFHX4Q86UP3 3567 aa6.06□□□□□ -1.44
CHD3-201ENST00000330494 DMDP11532 3685 aa6.05□□□□□ -1.44
CHD3-201ENST00000330494 KRTAP16-1A8MUX0 517 aa6.04□□□□□ -1.44
CHD3-201ENST00000330494 SPRR1BP22528 89 aa6.03□□□□□ -1.44
CHD3-201ENST00000330494 A0A087X002 238 aa6.02□□□□□ -1.45
CHD3-201ENST00000330494 APCP25054 2843 aa6.02□□□□□ -1.45
CHD3-201ENST00000330494 ROMO1P60602 79 aa6.02□□□□□ -1.45
CHD3-201ENST00000330494 FLNCQ14315 2725 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms