RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 A0A1B0GX51 115 aa12.97□□□□□ -0.33
HOXD4-201ENST00000306324 C4orf48Q5BLP8 95 aa12.97□□□□□ -0.33
HOXD4-201ENST00000306324 NAA38Q9BRA0 125 aaKnown RBP12.95□□□□□ -0.34
HOXD4-201ENST00000306324 OCIAD2Q56VL3 154 aa12.93□□□□□ -0.34
HOXD4-201ENST00000306324 SPAG11AQ6PDA7 123 aa12.93□□□□□ -0.34
HOXD4-201ENST00000306324 DNAL4O96015 105 aa12.92□□□□□ -0.34
HOXD4-201ENST00000306324 PPDPFLQ8WWR9 84 aa12.92□□□□□ -0.34
HOXD4-201ENST00000306324 HMCN2Q8NDA2 5059 aa12.92□□□□□ -0.34
HOXD4-201ENST00000306324 F8WEM9 126 aa12.91□□□□□ -0.34
HOXD4-201ENST00000306324 SNHG12Q9BXW3 62 aa12.91□□□□□ -0.34
HOXD4-201ENST00000306324 PCP4L1A6NKN8 68 aa12.87□□□□□ -0.35
HOXD4-201ENST00000306324 GHRHP01286 108 aa12.87□□□□□ -0.35
HOXD4-201ENST00000306324 LST1O00453 97 aa12.86□□□□□ -0.35
HOXD4-201ENST00000306324 SPINK1P00995 79 aa12.86□□□□□ -0.35
HOXD4-201ENST00000306324 ORMDL1Q9P0S3 153 aa12.85□□□□□ -0.35
HOXD4-201ENST00000306324 H3BUT2 72 aa12.85□□□□□ -0.35
HOXD4-201ENST00000306324 FABP2P12104 132 aa12.85□□□□□ -0.35
HOXD4-201ENST00000306324 TRACP01848 142 aa12.84□□□□□ -0.35
HOXD4-201ENST00000306324 HRCT1Q6UXD1 115 aa12.84□□□□□ -0.35
HOXD4-201ENST00000306324 A0A0G2JQZ4 141 aa12.83□□□□□ -0.36
HOXD4-201ENST00000306324 TAX1BP3O14907 124 aa12.82□□□□□ -0.36
HOXD4-201ENST00000306324 LYRM7Q5U5X0 104 aa12.81□□□□□ -0.36
HOXD4-201ENST00000306324 C9orf118A6NHY6 69 aa12.8□□□□□ -0.36
HOXD4-201ENST00000306324 TCL1BO95988 128 aa12.8□□□□□ -0.36
HOXD4-201ENST00000306324 NDUFV3P56181 108 aaKnown RBP12.8□□□□□ -0.36
HOXD4-201ENST00000306324 RETNLBQ9BQ08 111 aa12.8□□□□□ -0.36
HOXD4-201ENST00000306324 ATXN8Q156A1 80 aa12.79□□□□□ -0.36
HOXD4-201ENST00000306324 IGLV8-61A0A075B6I0 122 aa12.78□□□□□ -0.36
HOXD4-201ENST00000306324 PRR4Q16378 134 aa12.78□□□□□ -0.36
HOXD4-201ENST00000306324 H3BQ85 93 aa12.78□□□□□ -0.36
HOXD4-201ENST00000306324 Q6JHZ5 121 aa12.78□□□□□ -0.36
HOXD4-201ENST00000306324 TMEM256-PLSCR3K7ERE1 68 aa12.77□□□□□ -0.37
HOXD4-201ENST00000306324 RPS29P62273 56 aaKnown RBP12.77□□□□□ -0.37
HOXD4-201ENST00000306324 CD164Q04900 197 aa12.76□□□□□ -0.37
HOXD4-201ENST00000306324 IGFL1Q6UW32 110 aa12.75□□□□□ -0.37
HOXD4-201ENST00000306324 H3BMG7 143 aa12.74□□□□□ -0.37
HOXD4-201ENST00000306324 COL5A1-AS1Q5SY13 56 aa12.74□□□□□ -0.37
HOXD4-201ENST00000306324 TRBV20-1A0A075B6N2 111 aa12.72□□□□□ -0.37
HOXD4-201ENST00000306324 A0A1W2PPM0 123 aa12.72□□□□□ -0.37
HOXD4-201ENST00000306324 A0A1B0GV72 72 aa12.71□□□□□ -0.38
HOXD4-201ENST00000306324 LIMD2Q9BT23 127 aa12.71□□□□□ -0.38
HOXD4-201ENST00000306324 BAALC-AS2P0C853 105 aa12.7□□□□□ -0.38
HOXD4-201ENST00000306324 UBE2V1Q13404 147 aa12.69□□□□□ -0.38
HOXD4-201ENST00000306324 ANKRD29Q8N6D5 301 aa12.65□□□□□ -0.38
HOXD4-201ENST00000306324 LPAP08519 4548 aa12.65□□□□□ -0.38
HOXD4-201ENST00000306324 LRP2P98164 4655 aa12.64□□□□□ -0.39
HOXD4-201ENST00000306324 C9JAW5 83 aa12.64□□□□□ -0.39
HOXD4-201ENST00000306324 IGLV7-46A0A075B6I9 117 aa12.62□□□□□ -0.39
HOXD4-201ENST00000306324 TRBV7-7A0A0K0K1E9 115 aa12.61□□□□□ -0.39
HOXD4-201ENST00000306324 FP248Q71RG6 208 aaPredicted RBP12.6□□□□□ -0.39
HOXD4-201ENST00000306324 SPCS1Q9Y6A9 102 aa12.6□□□□□ -0.39
HOXD4-201ENST00000306324 Q5XG85 94 aa12.59□□□□□ -0.39
HOXD4-201ENST00000306324 TEN1Q86WV5 123 aa12.59□□□□□ -0.39
HOXD4-201ENST00000306324 RBM3P98179 157 aaKnown RBP12.57□□□□□ -0.4
HOXD4-201ENST00000306324 Q6Q795 121 aa12.56□□□□□ -0.4
HOXD4-201ENST00000306324 MTURNQ8N3F0 131 aa12.55□□□□□ -0.4
HOXD4-201ENST00000306324 A0A1W2PNM2 257 aa12.53□□□□□ -0.4
HOXD4-201ENST00000306324 DSCR8Q96T75 97 aa12.53□□□□□ -0.4
HOXD4-201ENST00000306324 TRBV7-4A0A0J9YYF1 115 aa12.52□□□□□ -0.41
HOXD4-201ENST00000306324 UBR4Q5T4S7 5183 aa12.52□□□□□ -0.41
HOXD4-201ENST00000306324 JMJD7-PLA2G4BH0Y9G9 81 aa12.51□□□□□ -0.41
HOXD4-201ENST00000306324 CCKP06307 115 aa12.51□□□□□ -0.41
HOXD4-201ENST00000306324 C1orf195Q5TG92 126 aa12.51□□□□□ -0.41
HOXD4-201ENST00000306324 A0A087WSZ3 146 aa12.5□□□□□ -0.41
HOXD4-201ENST00000306324 H3BT86 120 aa12.5□□□□□ -0.41
HOXD4-201ENST00000306324 TPRXLQ17RH7 258 aa12.49□□□□□ -0.41
HOXD4-201ENST00000306324 VPS25Q9BRG1 176 aa12.49□□□□□ -0.41
HOXD4-201ENST00000306324 SS18L2Q9UHA2 77 aa12.48□□□□□ -0.41
HOXD4-201ENST00000306324 K7EP34 96 aa12.47□□□□□ -0.41
HOXD4-201ENST00000306324 ASB16-AS1Q495Z4 193 aa12.47□□□□□ -0.41
HOXD4-201ENST00000306324 CDIP1Q9H305 208 aa12.45□□□□□ -0.42
HOXD4-201ENST00000306324 KRTAP13-3Q3SY46 172 aa12.43□□□□□ -0.42
HOXD4-201ENST00000306324 C14orf132Q9NPU4 83 aa12.43□□□□□ -0.42
HOXD4-201ENST00000306324 GTF2H5Q6ZYL4 71 aa12.41□□□□□ -0.42
HOXD4-201ENST00000306324 OBSCN-AS1Q96MR7 158 aa12.41□□□□□ -0.42
HOXD4-201ENST00000306324 Q6ZQT0 140 aa12.4□□□□□ -0.43
HOXD4-201ENST00000306324 LOC110117498A0A087WWA1 95 aa12.39□□□□□ -0.43
HOXD4-201ENST00000306324 SMCPP49901 116 aaPredicted RBP12.38□□□□□ -0.43
HOXD4-201ENST00000306324 PDE6GP18545 87 aa12.37□□□□□ -0.43
HOXD4-201ENST00000306324 PRO0461Q9UI25 63 aa12.35□□□□□ -0.43
HOXD4-201ENST00000306324 C9orf92A6NGG3 77 aa12.34□□□□□ -0.43
HOXD4-201ENST00000306324 Q96NJ1 140 aa12.32□□□□□ -0.44
HOXD4-201ENST00000306324 C21orf62-AS1Q17RA5 79 aa12.29□□□□□ -0.44
HOXD4-201ENST00000306324 A0A1B0GW54 56 aa12.26□□□□□ -0.45
HOXD4-201ENST00000306324 F8W1H4 67 aa12.26□□□□□ -0.45
HOXD4-201ENST00000306324 DEFB116Q30KQ4 102 aa12.26□□□□□ -0.45
HOXD4-201ENST00000306324 SIGMAR1Q99720 223 aa12.26□□□□□ -0.45
HOXD4-201ENST00000306324 XP32Q5T750 250 aa12.25□□□□□ -0.45
HOXD4-201ENST00000306324 LINC00472Q9H8W2 130 aa12.25□□□□□ -0.45
HOXD4-201ENST00000306324 RNF213Q63HN8 5207 aa12.24□□□□□ -0.45
HOXD4-201ENST00000306324 IGKV4-1P06312 121 aa12.24□□□□□ -0.45
HOXD4-201ENST00000306324 A0A1B0GV90 55 aa12.22□□□□□ -0.45
HOXD4-201ENST00000306324 MUC17Q685J3 4493 aa12.17□□□□□ -0.46
HOXD4-201ENST00000306324 ETDBQ3ZM63 59 aa12.16□□□□□ -0.46
HOXD4-201ENST00000306324 NREPQ16612 68 aa12.14□□□□□ -0.47
HOXD4-201ENST00000306324 J3KT08 172 aa12.12□□□□□ -0.47
HOXD4-201ENST00000306324 SEC61BP60468 96 aaKnown RBP12.1□□□□□ -0.47
HOXD4-201ENST00000306324 DSCR10P59022 87 aa12.09□□□□□ -0.47
HOXD4-201ENST00000306324 IGHV6-1A0A0B4J1U7 121 aa12.08□□□□□ -0.48
HOXD4-201ENST00000306324 MUC2Q02817 5179 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms