RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 CR1P17927 2039 aa10.21□□□□□ -0.78
USP42-201ENST00000306177 LINC00336Q6ZUF6 198 aa10.2□□□□□ -0.78
USP42-201ENST00000306177 LINC01600Q96MT4 127 aa10.2□□□□□ -0.78
USP42-201ENST00000306177 SMR3BP02814 79 aaPredicted RBP10.2□□□□□ -0.78
USP42-201ENST00000306177 CYP4F30PQ9H0H9 118 aa10.2□□□□□ -0.78
USP42-201ENST00000306177 A8MUN3 132 aa10.2□□□□□ -0.78
USP42-201ENST00000306177 IGLV5-48A0A075B6I7 105 aa10.19□□□□□ -0.78
USP42-201ENST00000306177 WIPF1O43516 503 aa10.17□□□□□ -0.78
USP42-201ENST00000306177 CHD6Q8TD26 2715 aa10.17□□□□□ -0.78
USP42-201ENST00000306177 C9orf92A6NGG3 77 aa10.17□□□□□ -0.78
USP42-201ENST00000306177 DMXL2Q8TDJ6 3036 aa10.16□□□□□ -0.78
USP42-201ENST00000306177 H7BZZ5 65 aa10.16□□□□□ -0.78
USP42-201ENST00000306177 FAM104AQ969W3 186 aa10.16□□□□□ -0.78
USP42-201ENST00000306177 COL12A1Q99715 3063 aa10.16□□□□□ -0.78
USP42-201ENST00000306177 TEX15Q9BXT5 2789 aa10.15□□□□□ -0.78
USP42-201ENST00000306177 UQCR11O14957 56 aa10.15□□□□□ -0.79
USP42-201ENST00000306177 ADGRG4Q8IZF6 3080 aa10.11□□□□□ -0.79
USP42-201ENST00000306177 CRIPTQ9P021 101 aa10.11□□□□□ -0.79
USP42-201ENST00000306177 STAB1Q9NY15 2570 aa10.11□□□□□ -0.79
USP42-201ENST00000306177 IGSF10Q6WRI0 2623 aa10.1□□□□□ -0.79
USP42-201ENST00000306177 UNC79Q9P2D8 2635 aa10.09□□□□□ -0.79
USP42-201ENST00000306177 DMXL1Q9Y485 3027 aa10.08□□□□□ -0.8
USP42-201ENST00000306177 CD164Q04900 197 aa10.08□□□□□ -0.8
USP42-201ENST00000306177 COL6A5A8TX70 2615 aa10.08□□□□□ -0.8
USP42-201ENST00000306177 COX6B2Q6YFQ2 88 aa10.08□□□□□ -0.8
USP42-201ENST00000306177 SETXQ7Z333 2677 aaKnown RBP10.06□□□□□ -0.8
USP42-201ENST00000306177 ZZEF1O43149 2961 aa10.06□□□□□ -0.8
USP42-201ENST00000306177 TNP2Q05952 138 aa10.05□□□□□ -0.8
USP42-201ENST00000306177 SPANXA2-OT1Q8N9U9 137 aa10.05□□□□□ -0.8
USP42-201ENST00000306177 MIR22HGQ0VDD5 57 aa10.03□□□□□ -0.8
USP42-201ENST00000306177 KALRNO60229 2985 aa10.03□□□□□ -0.8
USP42-201ENST00000306177 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.01□□□□□ -0.81
USP42-201ENST00000306177 TNRC18O15417 2968 aaPredicted RBP10□□□□□ -0.81
USP42-201ENST00000306177 NOTCH1P46531 2555 aa10□□□□□ -0.81
USP42-201ENST00000306177 GCN1Q92616 2671 aaKnown RBP9.99□□□□□ -0.81
USP42-201ENST00000306177 OCR1Q9BZK8 76 aa9.98□□□□□ -0.81
USP42-201ENST00000306177 LCA10Q71F78 164 aa9.97□□□□□ -0.81
USP42-201ENST00000306177 RELNP78509 3460 aa9.97□□□□□ -0.81
USP42-201ENST00000306177 TACC2O95359 2948 aa9.96□□□□□ -0.81
USP42-201ENST00000306177 RBM12B-AS1Q9P1G2 102 aa9.96□□□□□ -0.82
USP42-201ENST00000306177 KTN1-AS1Q86SY8 53 aa9.94□□□□□ -0.82
USP42-201ENST00000306177 Q8N1X5 172 aa9.93□□□□□ -0.82
USP42-201ENST00000306177 Q8NDZ9 215 aa9.91□□□□□ -0.82
USP42-201ENST00000306177 SPRR1AP35321 89 aa9.91□□□□□ -0.82
USP42-201ENST00000306177 PLAC8Q9NZF1 115 aa9.89□□□□□ -0.83
USP42-201ENST00000306177 UBR5O95071 2799 aaPredicted RBP9.89□□□□□ -0.83
USP42-201ENST00000306177 FAM229BQ4G0N7 80 aa9.89□□□□□ -0.83
USP42-201ENST00000306177 PRR26Q8N8Z3 221 aa9.86□□□□□ -0.83
USP42-201ENST00000306177 LUZP6Q538Z0 58 aa9.86□□□□□ -0.83
USP42-201ENST00000306177 NBEAL1Q6ZS30 2694 aa9.85□□□□□ -0.83
USP42-201ENST00000306177 SMG1Q96Q15 3661 aaKnown RBP9.85□□□□□ -0.83
USP42-201ENST00000306177 BAHCC1Q9P281 2608 aa9.84□□□□□ -0.83
USP42-201ENST00000306177 LRBAP50851 2863 aa9.83□□□□□ -0.84
USP42-201ENST00000306177 LINC01554Q52M75 96 aa9.82□□□□□ -0.84
USP42-201ENST00000306177 FLG2Q5D862 2391 aaPredicted RBP9.82□□□□□ -0.84
USP42-201ENST00000306177 CDC42SE1Q9NRR8 79 aa9.81□□□□□ -0.84
USP42-201ENST00000306177 IGLV7-46A0A075B6I9 117 aa9.81□□□□□ -0.84
USP42-201ENST00000306177 FLNCQ14315 2725 aa9.8□□□□□ -0.84
USP42-201ENST00000306177 NBEAL2Q6ZNJ1 2754 aa9.8□□□□□ -0.84
USP42-201ENST00000306177 KRTAP1-5Q9BYS1 174 aa9.8□□□□□ -0.84
USP42-201ENST00000306177 MMP24-AS1A0A0U1RRL7 71 aa9.8□□□□□ -0.84
USP42-201ENST00000306177 SPRR1BP22528 89 aa9.79□□□□□ -0.84
USP42-201ENST00000306177 ASH1LQ9NR48 2969 aaKnown RBP9.78□□□□□ -0.84
USP42-201ENST00000306177 HRES1P13985 223 aa9.77□□□□□ -0.85
USP42-201ENST00000306177 Q1T7F1 81 aa9.77□□□□□ -0.85
USP42-201ENST00000306177 Q6ZSA8 131 aa9.77□□□□□ -0.85
USP42-201ENST00000306177 KRTAP26-1Q6PEX3 210 aa9.77□□□□□ -0.85
USP42-201ENST00000306177 A0A0D9SG42 100 aa9.76□□□□□ -0.85
USP42-201ENST00000306177 SVEP1Q4LDE5 3571 aa9.75□□□□□ -0.85
USP42-201ENST00000306177 Q5XG85 94 aa9.75□□□□□ -0.85
USP42-201ENST00000306177 ITPR1Q14643 2758 aa9.72□□□□□ -0.85
USP42-201ENST00000306177 LINC00472Q9H8W2 130 aa9.71□□□□□ -0.85
USP42-201ENST00000306177 CUBNO60494 3623 aa9.71□□□□□ -0.86
USP42-201ENST00000306177 CSMD1Q96PZ7 3565 aa9.71□□□□□ -0.86
USP42-201ENST00000306177 ZCCHC13Q8WW36 166 aaKnown RBP9.7□□□□□ -0.86
USP42-201ENST00000306177 ITPR2Q14571 2701 aa9.67□□□□□ -0.86
USP42-201ENST00000306177 Q8N9P0 234 aaPredicted RBP9.66□□□□□ -0.86
USP42-201ENST00000306177 CYSTM1Q9H1C7 97 aa9.65□□□□□ -0.86
USP42-201ENST00000306177 NSD1Q96L73 2696 aaPredicted RBP9.65□□□□□ -0.86
USP42-201ENST00000306177 A0A1B0GU33 70 aa9.63□□□□□ -0.87
USP42-201ENST00000306177 FP248Q71RG6 208 aaPredicted RBP9.62□□□□□ -0.87
USP42-201ENST00000306177 Q75L30 129 aa9.62□□□□□ -0.87
USP42-201ENST00000306177 Q5W150 140 aa9.61□□□□□ -0.87
USP42-201ENST00000306177 LINC01558Q9Y6Z2 57 aa9.59□□□□□ -0.87
USP42-201ENST00000306177 SPENQ96T58 3664 aaKnown RBP9.58□□□□□ -0.88
USP42-201ENST00000306177 KRTAP10-1P60331 282 aa9.56□□□□□ -0.88
USP42-201ENST00000306177 H3BS24 57 aa9.55□□□□□ -0.88
USP42-201ENST00000306177 LINC00483Q53H64 154 aa9.55□□□□□ -0.88
USP42-201ENST00000306177 KRTAP10-2P60368 255 aa9.54□□□□□ -0.88
USP42-201ENST00000306177 STAB2Q8WWQ8 2551 aa9.54□□□□□ -0.88
USP42-201ENST00000306177 LCE6AA0A183 80 aa9.53□□□□□ -0.88
USP42-201ENST00000306177 KRTAP4-16G5E9R7 235 aaPredicted RBP9.53□□□□□ -0.88
USP42-201ENST00000306177 CSAG1Q6PB30 78 aa9.52□□□□□ -0.89
USP42-201ENST00000306177 A0A0A0MQY5 61 aa9.52□□□□□ -0.89
USP42-201ENST00000306177 SPINK7P58062 85 aa9.51□□□□□ -0.89
USP42-201ENST00000306177 OXTP01178 125 aa9.51□□□□□ -0.89
USP42-201ENST00000306177 S4R3F8 94 aa9.51□□□□□ -0.89
USP42-201ENST00000306177 UTP20O75691 2785 aaKnown RBP9.5□□□□□ -0.89
USP42-201ENST00000306177 PANO1I0J062 215 aa9.49□□□□□ -0.89
USP42-201ENST00000306177 Q5VSD8 79 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 204 ms