RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 HELZ2Q9BYK8 2649 aaKnown RBP7.74□□□□□ -1.17
USP40-201ENST00000251722 A0A0D9SG42 100 aa7.74□□□□□ -1.17
USP40-201ENST00000251722 NDUFAF8A1L188 74 aa7.73□□□□□ -1.17
USP40-201ENST00000251722 Q6ZR54 194 aa7.73□□□□□ -1.17
USP40-201ENST00000251722 S4R3F8 94 aa7.71□□□□□ -1.18
USP40-201ENST00000251722 FLNAP21333 2647 aaKnown RBP7.71□□□□□ -1.18
USP40-201ENST00000251722 GOLGB1Q14789 3259 aaKnown RBP7.7□□□□□ -1.18
USP40-201ENST00000251722 ADM2Q7Z4H4 148 aa7.69□□□□□ -1.18
USP40-201ENST00000251722 KRTAP1-5Q9BYS1 174 aa7.69□□□□□ -1.18
USP40-201ENST00000251722 KRTAP10-1P60331 282 aa7.69□□□□□ -1.18
USP40-201ENST00000251722 LINC00472Q9H8W2 130 aa7.69□□□□□ -1.18
USP40-201ENST00000251722 RPS29P62273 56 aaKnown RBP7.67□□□□□ -1.18
USP40-201ENST00000251722 ITPR3Q14573 2671 aa7.66□□□□□ -1.18
USP40-201ENST00000251722 MGAM2Q2M2H8 2515 aa7.65□□□□□ -1.18
USP40-201ENST00000251722 A8MU10 97 aa7.64□□□□□ -1.19
USP40-201ENST00000251722 RPL37P61927 97 aaKnown RBP7.63□□□□□ -1.19
USP40-201ENST00000251722 KRTAP10-2P60368 255 aa7.61□□□□□ -1.19
USP40-201ENST00000251722 Q5W150 140 aa7.61□□□□□ -1.19
USP40-201ENST00000251722 NOTCH2NLQ7Z3S9 236 aa7.58□□□□□ -1.2
USP40-201ENST00000251722 Q8NDZ9 215 aa7.58□□□□□ -1.2
USP40-201ENST00000251722 KRTAP29-1A8MX34 341 aaPredicted RBP7.56□□□□□ -1.2
USP40-201ENST00000251722 H1FX-AS1Q4G0G2 97 aa7.56□□□□□ -1.2
USP40-201ENST00000251722 C20orf166-AS1Q96NR2 134 aa7.55□□□□□ -1.2
USP40-201ENST00000251722 KRTAP4-16G5E9R7 235 aaPredicted RBP7.53□□□□□ -1.2
USP40-201ENST00000251722 ATRQ13535 2644 aa7.51□□□□□ -1.21
USP40-201ENST00000251722 R4GN34 69 aa7.51□□□□□ -1.21
USP40-201ENST00000251722 MAST4O15021 2626 aa7.5□□□□□ -1.21
USP40-201ENST00000251722 USP24Q9UPU5 2620 aa7.49□□□□□ -1.21
USP40-201ENST00000251722 A8MUU9 505 aa7.47□□□□□ -1.21
USP40-201ENST00000251722 DNAH12Q6ZR08 3092 aa7.47□□□□□ -1.21
USP40-201ENST00000251722 Q6ZRN7 208 aaPredicted RBP7.47□□□□□ -1.21
USP40-201ENST00000251722 CFAP46Q8IYW2 2715 aa7.46□□□□□ -1.22
USP40-201ENST00000251722 PANO1I0J062 215 aa7.42□□□□□ -1.22
USP40-201ENST00000251722 PRRC2CQ9Y520 2896 aaKnown RBP7.4□□□□□ -1.23
USP40-201ENST00000251722 PLAC4Q8WY50 150 aa7.37□□□□□ -1.23
USP40-201ENST00000251722 KRTAP11-1Q8IUC1 163 aa7.35□□□□□ -1.23
USP40-201ENST00000251722 ZNF292O60281 2723 aa7.32□□□□□ -1.24
USP40-201ENST00000251722 M0QZ58 72 aa7.32□□□□□ -1.24
USP40-201ENST00000251722 CHD7Q9P2D1 2997 aa7.29□□□□□ -1.24
USP40-201ENST00000251722 UTRNP46939 3433 aa7.28□□□□□ -1.24
USP40-201ENST00000251722 KRTAP13-1Q8IUC0 172 aa7.28□□□□□ -1.24
USP40-201ENST00000251722 UNC79Q9P2D8 2635 aa7.27□□□□□ -1.24
USP40-201ENST00000251722 STAB1Q9NY15 2570 aa7.27□□□□□ -1.25
USP40-201ENST00000251722 CEP350Q5VT06 3117 aa7.26□□□□□ -1.25
USP40-201ENST00000251722 BPTFQ12830 3046 aa7.24□□□□□ -1.25
USP40-201ENST00000251722 KMT2BQ9UMN6 2715 aaPredicted RBP7.24□□□□□ -1.25
USP40-201ENST00000251722 BAHCC1Q9P281 2608 aa7.23□□□□□ -1.25
USP40-201ENST00000251722 CHD9Q3L8U1 2897 aa7.23□□□□□ -1.25
USP40-201ENST00000251722 C5orf42Q9H799 3197 aa7.18□□□□□ -1.26
USP40-201ENST00000251722 KRTAP13-2Q52LG2 175 aa7.18□□□□□ -1.26
USP40-201ENST00000251722 COL6A5A8TX70 2615 aa7.15□□□□□ -1.26
USP40-201ENST00000251722 KRTAP7-1Q8IUC3 87 aa7.14□□□□□ -1.27
USP40-201ENST00000251722 IGSF10Q6WRI0 2623 aa7.14□□□□□ -1.27
USP40-201ENST00000251722 TRANK1O15050 2925 aa7.14□□□□□ -1.27
USP40-201ENST00000251722 TEP1Q99973 2627 aaKnown RBP7.12□□□□□ -1.27
USP40-201ENST00000251722 TEX15Q9BXT5 2789 aa7.11□□□□□ -1.27
USP40-201ENST00000251722 HTTP42858 3142 aa7.09□□□□□ -1.27
USP40-201ENST00000251722 CENPEQ02224 2701 aa7.04□□□□□ -1.28
USP40-201ENST00000251722 NSD1Q96L73 2696 aaPredicted RBP7.03□□□□□ -1.28
USP40-201ENST00000251722 P0C880 135 aa7.03□□□□□ -1.28
USP40-201ENST00000251722 NBEAL1Q6ZS30 2694 aa7.02□□□□□ -1.29
USP40-201ENST00000251722 SETXQ7Z333 2677 aaKnown RBP6.99□□□□□ -1.29
USP40-201ENST00000251722 RANBP2P49792 3224 aaKnown RBP6.98□□□□□ -1.29
USP40-201ENST00000251722 ITPR2Q14571 2701 aa6.97□□□□□ -1.29
USP40-201ENST00000251722 TPRXLQ17RH7 258 aa6.97□□□□□ -1.29
USP40-201ENST00000251722 MGAQ8IWI9 3026 aa6.97□□□□□ -1.29
USP40-201ENST00000251722 PP632Q6XCG6 107 aa6.96□□□□□ -1.29
USP40-201ENST00000251722 AKAP13Q12802 2813 aa6.96□□□□□ -1.3
USP40-201ENST00000251722 CHD6Q8TD26 2715 aa6.95□□□□□ -1.3
USP40-201ENST00000251722 PCNTO95613 3336 aa6.94□□□□□ -1.3
USP40-201ENST00000251722 FLG2Q5D862 2391 aaPredicted RBP6.93□□□□□ -1.3
USP40-201ENST00000251722 NOTCH1P46531 2555 aa6.91□□□□□ -1.3
USP40-201ENST00000251722 KRTAP1-4P0C5Y4 121 aa6.91□□□□□ -1.3
USP40-201ENST00000251722 H0YAA0 97 aa6.9□□□□□ -1.3
USP40-201ENST00000251722 GCN1Q92616 2671 aaKnown RBP6.9□□□□□ -1.31
USP40-201ENST00000251722 MAP1AP78559 2803 aaPredicted RBP6.89□□□□□ -1.31
USP40-201ENST00000251722 TNP1P09430 55 aa6.88□□□□□ -1.31
USP40-201ENST00000251722 XP32Q5T750 250 aa6.88□□□□□ -1.31
USP40-201ENST00000251722 C10orf95Q9H7T3 257 aa6.88□□□□□ -1.31
USP40-201ENST00000251722 LAMA3Q16787 3333 aa6.86□□□□□ -1.31
USP40-201ENST00000251722 MKI67P46013 3256 aaKnown RBP6.84□□□□□ -1.32
USP40-201ENST00000251722 CFAP54Q96N23 3096 aa6.83□□□□□ -1.32
USP40-201ENST00000251722 DMBT1Q9UGM3 2413 aaPredicted RBP6.83□□□□□ -1.32
USP40-201ENST00000251722 DSPP15924 2871 aaKnown RBP6.78□□□□□ -1.32
USP40-201ENST00000251722 WDFY4Q6ZS81 3184 aa6.76□□□□□ -1.33
USP40-201ENST00000251722 UBR5O95071 2799 aaPredicted RBP6.76□□□□□ -1.33
USP40-201ENST00000251722 A0A1B0GVY2 172 aa6.74□□□□□ -1.33
USP40-201ENST00000251722 HIVEP1P15822 2718 aa6.73□□□□□ -1.33
USP40-201ENST00000251722 STAB2Q8WWQ8 2551 aa6.72□□□□□ -1.33
USP40-201ENST00000251722 KRTAP13-3Q3SY46 172 aa6.72□□□□□ -1.33
USP40-201ENST00000251722 BRCA2P51587 3418 aa6.72□□□□□ -1.33
USP40-201ENST00000251722 PRO2289Q9P1D8 64 aa6.71□□□□□ -1.34
USP40-201ENST00000251722 PRUNE2Q8WUY3 3088 aa6.68□□□□□ -1.34
USP40-201ENST00000251722 ITPR1Q14643 2758 aa6.67□□□□□ -1.34
USP40-201ENST00000251722 A0A0C4DFX4 3053 aa6.67□□□□□ -1.34
USP40-201ENST00000251722 NBEAL2Q6ZNJ1 2754 aa6.67□□□□□ -1.34
USP40-201ENST00000251722 KRTAP10-8P60410 259 aa6.66□□□□□ -1.34
USP40-201ENST00000251722 LAMA2P24043 3122 aaKnown RBP6.66□□□□□ -1.34
USP40-201ENST00000251722 TRIOO75962 3097 aa6.64□□□□□ -1.35
USP40-201ENST00000251722 UNC80Q8N2C7 3258 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms