RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 IGLV5-37A0A075B6J1 123 aa9.26□□□□□ -0.93
VRK3-217ENST00000599538 A0A096LNI7 61 aa9.26□□□□□ -0.93
VRK3-217ENST00000599538 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.26□□□□□ -0.93
VRK3-217ENST00000599538 IGLV1-50A0A075B6I6 118 aa9.25□□□□□ -0.93
VRK3-217ENST00000599538 NBDYA0A0U1RRE5 68 aa9.25□□□□□ -0.93
VRK3-217ENST00000599538 LINC00643Q86TS7 51 aa9.25□□□□□ -0.93
VRK3-217ENST00000599538 IGKV2-24A0A0C4DH68 120 aa9.25□□□□□ -0.93
VRK3-217ENST00000599538 M0R2N4 97 aa9.25□□□□□ -0.93
VRK3-217ENST00000599538 CNBPP62633 177 aaKnown RBP9.24□□□□□ -0.93
VRK3-217ENST00000599538 KRTAP4-16G5E9R7 235 aaPredicted RBP9.23□□□□□ -0.93
VRK3-217ENST00000599538 RBM3P98179 157 aaKnown RBP9.23□□□□□ -0.93
VRK3-217ENST00000599538 Q6Q795 121 aa9.23□□□□□ -0.93
VRK3-217ENST00000599538 MRPL55Q7Z7F7 128 aaKnown RBP9.23□□□□□ -0.93
VRK3-217ENST00000599538 TRBV7-7A0A0K0K1E9 115 aa9.23□□□□□ -0.93
VRK3-217ENST00000599538 LRCOL1A6NCL2 159 aa9.22□□□□□ -0.93
VRK3-217ENST00000599538 Q6ZRN7 208 aaPredicted RBP9.22□□□□□ -0.93
VRK3-217ENST00000599538 VPS13DQ5THJ4 4388 aa9.22□□□□□ -0.93
VRK3-217ENST00000599538 A0A1W2PNN7 141 aa9.22□□□□□ -0.93
VRK3-217ENST00000599538 Q6ZQT0 140 aa9.22□□□□□ -0.93
VRK3-217ENST00000599538 SPRR1AP35321 89 aa9.21□□□□□ -0.94
VRK3-217ENST00000599538 Q9BRP9 147 aa9.21□□□□□ -0.94
VRK3-217ENST00000599538 CHTF8P0CG12 524 aa9.2□□□□□ -0.94
VRK3-217ENST00000599538 C16orf90A8MZG2 172 aa9.2□□□□□ -0.94
VRK3-217ENST00000599538 B5MCH6 92 aa9.2□□□□□ -0.94
VRK3-217ENST00000599538 PRYO14603 147 aa9.19□□□□□ -0.94
VRK3-217ENST00000599538 Q6ZRX8 168 aa9.19□□□□□ -0.94
VRK3-217ENST00000599538 FBN3Q75N90 2809 aa9.19□□□□□ -0.94
VRK3-217ENST00000599538 NDUFV3P56181 108 aaKnown RBP9.19□□□□□ -0.94
VRK3-217ENST00000599538 KMT2AQ03164 3969 aa9.18□□□□□ -0.94
VRK3-217ENST00000599538 LOC110117498A0A087WWA1 95 aa9.18□□□□□ -0.94
VRK3-217ENST00000599538 IGKV3D-7A0A0C4DH55 119 aa9.18□□□□□ -0.94
VRK3-217ENST00000599538 DEFB105AQ8NG35 78 aa9.18□□□□□ -0.94
VRK3-217ENST00000599538 ETDCA0A1B0GVM5 59 aa9.17□□□□□ -0.94
VRK3-217ENST00000599538 DSCR8Q96T75 97 aa9.17□□□□□ -0.94
VRK3-217ENST00000599538 H3BQ85 93 aa9.16□□□□□ -0.94
VRK3-217ENST00000599538 LINC01547P58512 204 aaPredicted RBP9.16□□□□□ -0.94
VRK3-217ENST00000599538 C14orf177Q52M58 125 aa9.16□□□□□ -0.94
VRK3-217ENST00000599538 Q8N377 158 aa9.16□□□□□ -0.94
VRK3-217ENST00000599538 TGP01266 2768 aa9.16□□□□□ -0.94
VRK3-217ENST00000599538 ERC2-IT1O76042 136 aa9.16□□□□□ -0.94
VRK3-217ENST00000599538 ST20-AS1Q8NBB2 130 aa9.16□□□□□ -0.94
VRK3-217ENST00000599538 ANAPC13Q9BS18 74 aa9.16□□□□□ -0.94
VRK3-217ENST00000599538 TRBV7-4A0A0J9YYF1 115 aa9.15□□□□□ -0.94
VRK3-217ENST00000599538 KRTAP11-1Q8IUC1 163 aa9.14□□□□□ -0.95
VRK3-217ENST00000599538 C3orf22Q8N5N4 141 aa9.14□□□□□ -0.95
VRK3-217ENST00000599538 C9orf163Q8N9P6 203 aa9.14□□□□□ -0.95
VRK3-217ENST00000599538 IMUPQ9GZP8 106 aa9.14□□□□□ -0.95
VRK3-217ENST00000599538 FUSP35637 526 aaKnown RBP eCLIP9.14□□□□□ -0.95
VRK3-217ENST00000599538 PANO1I0J062 215 aa9.13□□□□□ -0.95
VRK3-217ENST00000599538 Q6JHZ5 121 aa9.13□□□□□ -0.95
VRK3-217ENST00000599538 REG3GQ6UW15 175 aa9.13□□□□□ -0.95
VRK3-217ENST00000599538 FAM236AA0A1B0GUQ0 79 aa9.13□□□□□ -0.95
VRK3-217ENST00000599538 FAM236BA0A1B0GV22 79 aa9.13□□□□□ -0.95
VRK3-217ENST00000599538 DHRS4-AS1Q9P1J3 65 aa9.13□□□□□ -0.95
VRK3-217ENST00000599538 GHRHP01286 108 aa9.12□□□□□ -0.95
VRK3-217ENST00000599538 PHF5AQ7RTV0 110 aaKnown RBP9.12□□□□□ -0.95
VRK3-217ENST00000599538 UBE2BP63146 152 aa9.11□□□□□ -0.95
VRK3-217ENST00000599538 A0A087WVE0 104 aa9.1□□□□□ -0.95
VRK3-217ENST00000599538 PRLHP81277 87 aa9.1□□□□□ -0.95
VRK3-217ENST00000599538 DNAH2Q9P225 4427 aa9.09□□□□□ -0.95
VRK3-217ENST00000599538 SRRM2Q9UQ35 2752 aaKnown RBP9.09□□□□□ -0.95
VRK3-217ENST00000599538 PDE6GP18545 87 aa9.08□□□□□ -0.96
VRK3-217ENST00000599538 UBL5Q9BZL1 73 aa9.08□□□□□ -0.96
VRK3-217ENST00000599538 Q6ZR54 194 aa9.08□□□□□ -0.96
VRK3-217ENST00000599538 A0A087WTM6 91 aa9.07□□□□□ -0.96
VRK3-217ENST00000599538 IGLV5-48A0A075B6I7 105 aa9.07□□□□□ -0.96
VRK3-217ENST00000599538 Q6ZVQ6 151 aa9.07□□□□□ -0.96
VRK3-217ENST00000599538 FAM19A1Q7Z5A9 133 aa9.07□□□□□ -0.96
VRK3-217ENST00000599538 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.05□□□□□ -0.96
VRK3-217ENST00000599538 HECTD4Q9Y4D8 3996 aa9.04□□□□□ -0.96
VRK3-217ENST00000599538 CCDC179H3BU77 68 aa9.04□□□□□ -0.96
VRK3-217ENST00000599538 HIST1H4AP62805 103 aaKnown RBP9.04□□□□□ -0.96
VRK3-217ENST00000599538 TNP2Q05952 138 aa9.04□□□□□ -0.96
VRK3-217ENST00000599538 HIGD2AQ9BW72 106 aa9.03□□□□□ -0.96
VRK3-217ENST00000599538 HAMPP81172 84 aa9.02□□□□□ -0.96
VRK3-217ENST00000599538 SMIM29Q86T20 159 aa9.02□□□□□ -0.97
VRK3-217ENST00000599538 LY6G6CO95867 125 aa9.01□□□□□ -0.97
VRK3-217ENST00000599538 DPH3Q96FX2 82 aa9.01□□□□□ -0.97
VRK3-217ENST00000599538 C3orf84H3BNL1 204 aa9□□□□□ -0.97
VRK3-217ENST00000599538 ATP5EP2Q5VTU8 51 aa9□□□□□ -0.97
VRK3-217ENST00000599538 SPACA4Q8TDM5 124 aa9□□□□□ -0.97
VRK3-217ENST00000599538 A0A0G2JQZ4 141 aa8.99□□□□□ -0.97
VRK3-217ENST00000599538 SCXQ7RTU7 201 aa8.99□□□□□ -0.97
VRK3-217ENST00000599538 A0A1W2PNM2 257 aa8.99□□□□□ -0.97
VRK3-217ENST00000599538 EPM2AB3EWF7 344 aa8.99□□□□□ -0.97
VRK3-217ENST00000599538 RTL8CO15255 209 aa8.98□□□□□ -0.97
VRK3-217ENST00000599538 C1orf137Q5JT78 98 aa8.98□□□□□ -0.97
VRK3-217ENST00000599538 LINC00474Q9P2X8 69 aa8.98□□□□□ -0.97
VRK3-217ENST00000599538 DNAH17Q9UFH2 4485 aa8.98□□□□□ -0.97
VRK3-217ENST00000599538 KRTAP21-3Q3LHN1 58 aa8.96□□□□□ -0.97
VRK3-217ENST00000599538 C1orf134Q5TEV5 83 aa8.96□□□□□ -0.97
VRK3-217ENST00000599538 PKIGQ9Y2B9 76 aa8.95□□□□□ -0.98
VRK3-217ENST00000599538 LINC00476Q8WZB0 136 aa8.94□□□□□ -0.98
VRK3-217ENST00000599538 UBE2AP49459 152 aa8.93□□□□□ -0.98
VRK3-217ENST00000599538 H0Y9J4 135 aa8.92□□□□□ -0.98
VRK3-217ENST00000599538 ATOX1O00244 68 aa8.92□□□□□ -0.98
VRK3-217ENST00000599538 CXCL6P80162 114 aa8.92□□□□□ -0.98
VRK3-217ENST00000599538 Q8NBF4 154 aa8.92□□□□□ -0.98
VRK3-217ENST00000599538 NREPQ16612 68 aa8.92□□□□□ -0.98
VRK3-217ENST00000599538 KRTAP13-1Q8IUC0 172 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms